Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g2039 ATGACCGACGCCATGGACTTGCTTCGATCTAATCTCTCCCGCGTTCGCATTCCGGAGCCTACCAATCGCATCTACAAGCAGGAATGCTGCTTGTCCTTCGACACTCCGAGGTCAGAAGGTGGTTTGTTCATTGATTTGAATACATTTCTAGCATTTGGAAAGGATTTTGTAGGTTGGAACTATGAGAGGACTGGAAATCCTGTGTATTTACACTTAAAGCAAAGAAAGAAGTTGGTTCCTGAAGACAGGCCTTCAAAGAAACCCACTCTCTTAGCTATAGGAGTTGATGGTGGGTTTGATAACAATGAACCCGAATATGATGAAACTTATAATATAGTGATACTGCCTAATTATGCAACTCTTCCATTTCCTTCGGTGGAGCTGCCAGAGAAGGTAAGGTTGGCAGTTGATGCTGTCTTATTGGCTGAGGGCGCTGAGAGAAAAGAGCAACTTGCAGCATGGACAGCTGATAAGAAGCAGATTAGTTCATATGCAATGAATCTGCAGCAGATTGACAATGGTGTTATAGTTCCTCCTTCTGGATGGAAGTGTTCTAAATGTGATAAAACTGAGAATCTGTGGCTCAATTTAACTGACGGAATGATCCTTTGTGGGAGAAGAAATTGGGATGGAACAGGAGGTAACAACCATGCTGTTGAGCACTACAAAGAGACAGGCTATCCTCTTGCTGTTAAACTAGGAACGATCACAGCTGACCTTGAAGCAGCAGATGTTTACTCTTATCCAGAGGATGATAGTGTCTTGGACCCAATTCTAGGACAACATCTTGCTTTCTTTGGCATTGACTTTTCATCCTTACAGAAGACTGAAATGACCACTGCTGAAAGAGAGCTTGACCAAAACACTAATTTTGATTGGAATCGGATACAAGAAAGTGGACAGGAAGTTGAACCAGTTTTTGGGCCAGGTTACACTGGGCTTGTTAATCTAGGAAACAGCTGCTACTTGGCGGCGACAATGCAAGTTGTATTTTCAACGCATCTGTTTTGTGAAAGATACTATACGAAACAAAGTTTAAAATTGGCTTTTGAAACTGCACCTGCAGATCCAACTGTCGATCTTAACATGCAGCTAACAAAGCTGGCACATGGTTTGCTATCCGGAAAATATTCAATTCCTTCACCAGAGAAATTTGAAAAGTTGAATTCTTCTTCCTCGGCAATAAATGCAAAACAGGAAGGCATACCCCCTCGAATGTTCAAAGCGGTTATTGCCGCGAGCCATCCTGAATTTTCTACAATGAGACAGCAGGATGCCTTGGAATTCTTCCTGCATTTTCTTGATCAAGTTGAGCGACAGAATTCTGGGAGTTCTGGAAGTGATCCTGCAAGAAGCTTCAAATTTGGTATTGAGGATCGTATTTTGTGTTCCTCTGGAAAAGTTGCTTATAACAGACGGCATGATTATATTCTCTCATTGAACATCCCATTACATGAAGCTACTAATAAAGATGAAGTTGAAGCCTTCCAGAAGCTCAAGGCACAAAAGATCTCAGAAGGGAAGGAACTAGGCACTGATGAAATTGTCCGGCCTAGAGTACCTCTAGAGGCATGCCTTGCAAGTTTTTCATCTCCTGAGGAGATTCATGATTTTTACAGCACTGCGTTGCACACTAAGACTACAGCAACAAAGACAGCAAGATTAACTTCCTTCCCAGACTACCTGGTCTTGCATATGCGCAAATTTATTATGGGGGAGGGCTGGGTGCCCAAAAAACTAGATGTCTATATTGATGTCCCTGACATCATTGATCTTAGTCACTTGCGTAGTAAAGGACCTCAGGCTGGGGAAGAGCTTTTGCCCGAGGCTGGTCCTGAGGACGAGTTTCAGTCAAATAAACCTTCAGCCAATGATGATATTGTTGCTCAACTTGTGTCAATGGGATTTAACCATCTTCACTGCCAGAAAGCTGCCATTAACACCTCAAACACTGGAGTTGAAGAGGCTATGAATTGGTTACTTTCTCACATGGATGATCCAGATATAAATGATCCAATCTCCGACAAGGCAGATTTTGTTGTTGACCAAACAAAAGTTGACATGTTGCTTCAATTTGGTTTTCAAGAAGCCATTGCTAAGAAAGCACTAAAGGCATCTGGTGGTGACATTGAGAAAGCGACAGATTGGATATTTAACAATCCCGAAGCTTCTATGTCATCAGAACCAGACTGTTTGGACGCCACTACATCAAGCACACCAACTAACCTCGATGCTGGGCTGCCCGATGGTGGAGAGAGATACAGACTTATGGGAATAATAAGCCACATTGGAACGTCTACTCAATGCGGTCACTATGTTGCGCACATCTTTAAAGATGGTAGATGGGTTATTTTCAATGACGACAAAGTTGGTGTTTCAGTTAACCCACCCAAAGACATGGGATATTTGTATTTCTTTGAAAGGCTAAAAGAGTAG 2436 42.45 MTDAMDLLRSNLSRVRIPEPTNRIYKQECCLSFDTPRSEGGLFIDLNTFLAFGKDFVGWNYERTGNPVYLHLKQRKKLVPEDRPSKKPTLLAIGVDGGFDNNEPEYDETYNIVILPNYATLPFPSVELPEKVRLAVDAVLLAEGAERKEQLAAWTADKKQISSYAMNLQQIDNGVIVPPSGWKCSKCDKTENLWLNLTDGMILCGRRNWDGTGGNNHAVEHYKETGYPLAVKLGTITADLEAADVYSYPEDDSVLDPILGQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQEVEPVFGPGYTGLVNLGNSCYLAATMQVVFSTHLFCERYYTKQSLKLAFETAPADPTVDLNMQLTKLAHGLLSGKYSIPSPEKFEKLNSSSSAINAKQEGIPPRMFKAVIAASHPEFSTMRQQDALEFFLHFLDQVERQNSGSSGSDPARSFKFGIEDRILCSSGKVAYNRRHDYILSLNIPLHEATNKDEVEAFQKLKAQKISEGKELGTDEIVRPRVPLEACLASFSSPEEIHDFYSTALHTKTTATKTARLTSFPDYLVLHMRKFIMGEGWVPKKLDVYIDVPDIIDLSHLRSKGPQAGEELLPEAGPEDEFQSNKPSANDDIVAQLVSMGFNHLHCQKAAINTSNTGVEEAMNWLLSHMDDPDINDPISDKADFVVDQTKVDMLLQFGFQEAIAKKALKASGGDIEKATDWIFNNPEASMSSEPDCLDATTSSTPTNLDAGLPDGGERYRLMGIISHIGTSTQCGHYVAHIFKDGRWVIFNDDKVGVSVNPPKDMGYLYFFERLKE 811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31346156 31359794 - ClG42_11g0203900.10 Clacu11g2039 262916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g2039 811 SUPERFAMILY UBA-like 648 723 IPR009060 GO:0005515(InterPro)
Clacu11g2039 811 ProSiteProfiles Zinc finger UBP-type profile. 160 270 IPR001607 GO:0008270(InterPro)
Clacu11g2039 811 CDD UBA1_atUBP14 624 668 - -
Clacu11g2039 811 Gene3D - 620 657 - -
Clacu11g2039 811 FunFam Ubiquitin carboxyl-terminal hydrolase 148 257 - -
Clacu11g2039 811 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 680 720 IPR015940 -
Clacu11g2039 811 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 106 IPR013083 -
Clacu11g2039 811 PIRSF UBP 5 810 IPR016652 GO:0004843(InterPro)|GO:0016579(InterPro)
Clacu11g2039 811 Pfam Variant UBP zinc finger 15 77 IPR041432 -
Clacu11g2039 811 MobiDBLite consensus disorder prediction 725 744 - -
Clacu11g2039 811 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 622 663 IPR015940 -
Clacu11g2039 811 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 257 IPR013083 -
Clacu11g2039 811 MobiDBLite consensus disorder prediction 600 619 - -
Clacu11g2039 811 CDD Peptidase_C19B 313 807 - -
Clacu11g2039 811 SUPERFAMILY Cysteine proteinases 307 809 IPR038765 -
Clacu11g2039 811 SMART uba_6 682 719 IPR015940 -
Clacu11g2039 811 SMART uba_6 624 662 IPR015940 -
Clacu11g2039 811 Pfam Ubiquitin carboxyl-terminal hydrolase 312 806 IPR001394 GO:0004843(InterPro)|GO:0016579(InterPro)
Clacu11g2039 811 FunFam Ubiquitin carboxyl-terminal hydrolase 621 663 - -
Clacu11g2039 811 FunFam Ubiquitin carboxyl-terminal hydrolase 664 725 - -
Clacu11g2039 811 Pfam Zn-finger in ubiquitin-hydrolases and other protein 184 257 IPR001607 GO:0008270(InterPro)
Clacu11g2039 811 Gene3D - 658 726 - -
Clacu11g2039 811 SMART Zf_UBP_1 183 238 IPR001607 GO:0008270(InterPro)
Clacu11g2039 811 SUPERFAMILY RING/U-box 162 270 - -
Clacu11g2039 811 Gene3D Cysteine proteinases 305 810 - -
Clacu11g2039 811 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 313 328 IPR018200 GO:0004843(InterPro)
Clacu11g2039 811 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 184 808 IPR050185 -
Clacu11g2039 811 FunFam Ubiquitin carboxyl-terminal hydrolase 305 640 - -
Clacu11g2039 811 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 754 772 IPR018200 GO:0004843(InterPro)
Clacu11g2039 811 Pfam UBA-like domain 624 671 IPR015940 -
Clacu11g2039 811 Pfam UBA-like domain 682 724 IPR015940 -
Clacu11g2039 811 MobiDBLite consensus disorder prediction 725 747 - -
Clacu11g2039 811 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 312 809 IPR028889 -
Clacu11g2039 811 FunFam Ubiquitin carboxyl-terminal hydrolase 5 102 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g2039 K11836 - - csv:101210128 1586.24
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g317 . . . . . . . . . . . . . . . . Cpe02g00728 . . . . . . . Cla11g01809 Cam11g1875 Cec11g1898 Cco11g1906 Clacu11g2039 Cmu11g1844 Cre11g2249 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008963 1 1 1 0 1 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 1 1 1 31