Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g2051 ATGGAGAATTTGGAATTTGGATTTCTATTCCCTCTTTTCTTAATTTCCCCATCTTTTCTTTTACCTTCTTTGCTTCTAAAAAACTACGACCACCGACCCACTTCCAGACTGCGAGAAGAGTGGGGGCGGAGAGAAGCGGCGGCGTACGGCGGAGAGAGGACAGGGAGAGAGATCGCTCCGGCAACTGATGGAAGTTTTTCGAAGTTGTCTCTCTCTCGCTTGTTTAGTGGAAGCACCGGCTGGCACTCATTAGCAACTGTAACCTGTTTGATCAAAAGTCTTAAAGGAACTTTGAGAGTTCTTGATTTTAGAAGGTTGGTTTTTGCGATTCACGATCTGGGTATTGCGCTTCTTGACGGATTCTTCTCTCATTCTTTTGAAGTGAAGGAAATGGCTCGATCGGATGAGAATAACCCCGGAGTGATCGGACGGGCAAATCTTCATGGGAGTATACGAATTGGTGGTGGTGGCGGTGGCAAATTTGTGGTGGGGATGGGTCAAAACCGCACAGCTTTGAGCAGCATTAATGAAAATGTTGCAGCAGCTCCTCCTGCCCCTCATCCCTGTGCAGTACTCAAAAGAGGCCTAACAGAAACTGATGTTGTTGTCAACAATAAAATCCCACCGATTCCAATTCATCGACCTATCACTCGGAAGTTTGCAGCTCAGCTGGCCAATAAGCAGCAGCCACCTGTGCCTGAGGTTGATAAAAAGCCACTTGAATCTGCTCCAACTCGAAAAGAGTCTTCAGATCATCATCCCATCGTAGAGGAAGATGATTCCATGGGTGAATCAGCAGTTCCGATGTTTGTTCAACACACAGAAGCAATGTTGGACGAAATTGACAGAATGGAGGAGGTGGAAATGGAAGATATAGAAGAAGAGCCAGTAATTGATATAGACAGCCGTGATAAGAAGGATCAACTAGCTGTTGTGGAGTACATTGATGACTTGTATGCTTTCTACAGGAAATCCGAGGTTTCTGGCTGTGTCCCACCAAACTACATGGCTCAACAAGCAGATATTAACGAGAGGATGAGAGGGATTCTCATTGACTGGCTAATTGAGGTACACTACAAATTTGAGCTGATGGAGGAGACATTGTACCTAACAGTCAACCTGATTGATAGATTCTTAGCGGTTCAGTCAGTGGTGAGAAAGAAGCTTCAGCTTGTTGGAGTGACGGCCATGCTTATAGCCTGCAAGTATGAAGAGGTTTCTGTTCCTGTTGTGGATGATCTTATTCTCATATCTGACAAAGCCTACACCCGAAAAGAAGTTCTGGACATGGAGAAGTTGATGATAAATACCTTACAGTTCAATCTGTCTGTTCCAACACCTTATGTCTTCATGAGGAGGTTTCTCAAAGCTGCACAATCTGATAGAGAGCTGGACCTGCTCTCCTTCTTCATGGTGGAGCTGTGTCTAGTGGAATATGAAATGCTGAAGTATAGACCTTCATTAATGGCTGCTGCTGCAGTCTTCACTGCTCAATGCACAGTGAATGGCTTCAAAGAATGGAGCAAAACCAGTGAGTGGCACACTGGCTACTCACAGGAACAACTTCTGGAATGTTCAAGGCTGATGGTGGGGTTCCATCAGAAAGCAGGGACAGGGAAATTGACAGGAGTTCACAGGAAGTATTGTACATCCAAGTTTGGATATGCTGCTAGAAATTCTGGGTCCAGTTGGGTTCTTCTAGCAATTTCTGGATATCCTGTGATAGAGATATTTGAATAG 1740 44.94 MENLEFGFLFPLFLISPSFLLPSLLLKNYDHRPTSRLREEWGRREAAAYGGERTGREIAPATDGSFSKLSLSRLFSGSTGWHSLATVTCLIKSLKGTLRVLDFRRLVFAIHDLGIALLDGFFSHSFEVKEMARSDENNPGVIGRANLHGSIRIGGGGGGKFVVGMGQNRTALSSINENVAAAPPAPHPCAVLKRGLTETDVVVNNKIPPIPIHRPITRKFAAQLANKQQPPVPEVDKKPLESAPTRKESSDHHPIVEEDDSMGESAVPMFVQHTEAMLDEIDRMEEVEMEDIEEEPVIDIDSRDKKDQLAVVEYIDDLYAFYRKSEVSGCVPPNYMAQQADINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLAVQSVVRKKLQLVGVTAMLIACKYEEVSVPVVDDLILISDKAYTRKEVLDMEKLMINTLQFNLSVPTPYVFMRRFLKAAQSDRELDLLSFFMVELCLVEYEMLKYRPSLMAAAAVFTAQCTVNGFKEWSKTSEWHTGYSQEQLLECSRLMVGFHQKAGTGKLTGVHRKYCTSKFGYAARNSGSSWVLLAISGYPVIEIFE 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31446050 31451793 - ClG42_11g0205100.10 Clacu11g2051 262928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g2051 579 SMART Cyclin_C_2 445 562 IPR004367 -
Clacu11g2051 579 SUPERFAMILY Cyclin-like 444 558 IPR036915 -
Clacu11g2051 579 Pfam Cyclin, C-terminal domain 445 557 IPR004367 -
Clacu11g2051 579 Pfam Cyclin, N-terminal domain 317 443 IPR006671 -
Clacu11g2051 579 SUPERFAMILY Cyclin-like 307 442 IPR036915 -
Clacu11g2051 579 ProSitePatterns Cyclins signature. 347 378 IPR048258 -
Clacu11g2051 579 FunFam G2/mitotic-specific cyclin-1 422 557 - -
Clacu11g2051 579 MobiDBLite consensus disorder prediction 224 261 - -
Clacu11g2051 579 CDD CYCLIN_AtCycB-like_rpt1 296 440 - -
Clacu11g2051 579 PANTHER CYCLINS 293 549 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Clacu11g2051 579 MobiDBLite consensus disorder prediction 239 260 - -
Clacu11g2051 579 CDD CYCLIN_AtCycB-like_rpt2 445 558 - -
Clacu11g2051 579 SMART cyclin_7 352 436 IPR013763 -
Clacu11g2051 579 SMART cyclin_7 449 531 IPR013763 -
Clacu11g2051 579 Gene3D - 331 443 - -
Clacu11g2051 579 Gene3D - 317 556 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2155 Clacu-Chr1:33060703 Clacu11g2051 Clacu-Chr11:31446050 3.60E-131 dispersed
Clacu01g2159 Clacu-Chr1:33084243 Clacu11g2051 Clacu-Chr11:31446050 2.80E-35 dispersed
Clacu04g0627 Clacu-Chr4:19855548 Clacu11g2051 Clacu-Chr11:31446050 2.00E-68 dispersed
Clacu09g0236 Clacu-Chr9:2184445 Clacu11g2051 Clacu-Chr11:31446050 8.90E-46 dispersed
Clacu09g2301 Clacu-Chr9:37726086 Clacu11g2051 Clacu-Chr11:31446050 5.20E-48 dispersed
Clacu11g2051 Clacu-Chr11:31446050 Clacu05g1869 Clacu-Chr5:27892746 5.50E-47 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g2051 K21777 - csv:101223199 754.977