Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g2056 ATGGATGACAAAACAGAGATGAAGGTAGCTTACAAGCACAAGAATGCCTTCAAGAACGACCCCAAGGATTTAATAGACCTGCACATCAAGAAAGAAGACATTTTAGACAAAATCCATACCTGCAAATCAATCAAGATCAACCAAAAAACACCATCCCAACCCCAAGGTGGAATCAGTGGATTGGACAGCCACAAAATGCAAGAAATGACGTGCAGTGGGCTAATAGAAAACGAAGGTTTCAATAACCCAAGCCCTTCCCTATATAAGATCCGATTAGATCCACTCGCGCTTGAAGCTTCCTTCGATAGATCTGAAAGGACCTTGATGTTAACGTCGCCGGAGCCAAGTTTGATGCAGTTCTTGATCAAAATTTTGCGCGACGGATTGGGTTCCTCTCTAGAACTTGAAAAGGCGGTTTTCTCTTCCTCACCTAACTCTTGGGAGGAGGAGTTGATCATTGCATGTGATGTGGATGAGGCTTGCAGTGTTGCACCGAACTTGTACAGTGCTTCGTCAGATCTATCTCTGGTTGAACGATCATGTTCGCCTGTGGCGATACTTCTGATCGAATATCCCTATTTATTTACTTTATTTTGTTGGGTTCTTAGAGGTTTGTCTTCGAATCTTCCTGATTCGGAGGGGGAGGCTCATGGGACCAAGCTTTCTCCCTCTGATATGAGCTGTTTTTCTTGCATTCGTGCTCGTTGTAAAGACGCCAGCAAGGTCGAAATTGACAATGGGAGTGGAAGGGGGAAGTCGTATGCAAATGAAACTGGAAAGGGGAAGGAATCGCAAACAAGAAGTGGAAACAACCGGAAATGTGGAGTTGCACGAAGCTTCCCATTTCGTGAATTGGCGACGGCTACGAGAGGTTTCAAGGAAGTGAACTTGATTGGTGAAGGGGGTTTTGGAAGAGTTTACAAAGGCCGATTAGAAACAGGCCAGGTTGTTGCGATCAAACAACTCAATCATGATGGTCTTCAGGGATATCAAGAATTCATTGTCGAAGTTCTTATGTTAAGTTTATTGCATCACTGTAATCTTGTCACGTTGATTGGTTATTGTACTGATGGAGATCAAAGACTGTTGGTCTATGAGTATATGTCGATGGGAAGCTTGGAAAACCATCTTTTTGCTTTGTTGCCTGAACGGCCACCATTGAGTTGGAACACTAGAATCAAGATTGCTCTTGGTGCAGCCCAGGGCCTTGAGTATCTTCACTGCACAGCCAATCCGCCAGTCATCTACCGTGACTTGAAATCTGCAAATATTTTACTCGATGATGACTTCAATCCAAAGCTCTCAGATTTTGGACTGGCAAAGTTAGGACCGGTTGGTGACAACACTCATGTTTCCACCAGAGTTATGGGAACGTATGGCTATTGTGCTCCGGAGTATGCCATGAGTGGCAAACTGACCCTTAAATCTGATATTTATTGCTTCGGTGTAGTTCTCTTGGAGCTAATTACAGGTAGGAAAGCTATCGACTCCACCAAGAAACCTGGAGAGCAAAATCTGGTTGCTTGGTCTCGCCCTTTTCTAAAAGACCGGAGGAAGTTCATTCAATTAGTCGACCCACTGCTGGAAGGACGCTACCCTCTTCGTTGTCTACACCATGCAATCGCAATTGCTGCAATGTGTCTCCAGGAGCAACCAACATTCCGGCCAATTATCAGTGATATCGTTGTGGCCCTTGAGTACTTAGCTTCTCAGAGTTACTTATCAGAACAACCGAGGGACGGCATGCCTAGTCCGTCCAAGCTATCTCCTCAAGGGGACAGTAGTACCCGTGTTCAAGAATCAAGATACGGAAAGAGTTCAACATCCAAGTGCATTTGCTGGCGTTAG 1848 44.91 MDDKTEMKVAYKHKNAFKNDPKDLIDLHIKKEDILDKIHTCKSIKINQKTPSQPQGGISGLDSHKMQEMTCSGLIENEGFNNPSPSLYKIRLDPLALEASFDRSERTLMLTSPEPSLMQFLIKILRDGLGSSLELEKAVFSSSPNSWEEELIIACDVDEACSVAPNLYSASSDLSLVERSCSPVAILLIEYPYLFTLFCWVLRGLSSNLPDSEGEAHGTKLSPSDMSCFSCIRARCKDASKVEIDNGSGRGKSYANETGKGKESQTRSGNNRKCGVARSFPFRELATATRGFKEVNLIGEGGFGRVYKGRLETGQVVAIKQLNHDGLQGYQEFIVEVLMLSLLHHCNLVTLIGYCTDGDQRLLVYEYMSMGSLENHLFALLPERPPLSWNTRIKIALGAAQGLEYLHCTANPPVIYRDLKSANILLDDDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYCFGVVLLELITGRKAIDSTKKPGEQNLVAWSRPFLKDRRKFIQLVDPLLEGRYPLRCLHHAIAIAAMCLQEQPTFRPIISDIVVALEYLASQSYLSEQPRDGMPSPSKLSPQGDSSTRVQESRYGKSSTSKCICWR 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31513777 31520678 - ClG42_11g0205600.10 Clacu11g2056 262933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g2056 615 MobiDBLite consensus disorder prediction 258 273 - -
Clacu11g2056 615 MobiDBLite consensus disorder prediction 576 608 - -
Clacu11g2056 615 ProSiteProfiles Protein kinase domain profile. 292 568 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g2056 615 SUPERFAMILY Protein kinase-like (PK-like) 275 566 IPR011009 -
Clacu11g2056 615 CDD STKc_IRAK 298 566 - -
Clacu11g2056 615 SMART serkin_6 292 568 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g2056 615 FunFam probable serine/threonine-protein kinase RLCKVII 262 367 - -
Clacu11g2056 615 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524(InterPro)
Clacu11g2056 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g2056 615 Gene3D Phosphorylase Kinase; domain 1 262 367 - -
Clacu11g2056 615 MobiDBLite consensus disorder prediction 576 615 - -
Clacu11g2056 615 FunFam Serine/threonine-protein kinase PBS1 368 581 - -
Clacu11g2056 615 Gene3D Transferase(Phosphotransferase) domain 1 368 581 - -
Clacu11g2056 615 PANTHER OS07G0668900 PROTEIN 257 584 - -
Clacu11g2056 615 MobiDBLite consensus disorder prediction 247 273 - -
Clacu11g2056 615 Pfam Protein kinase domain 293 561 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0802 Clacu-Chr7:20355994 Clacu11g2056 Clacu-Chr11:31513777 1.60E-39 dispersed
Clacu08g1096 Clacu-Chr8:20949112 Clacu11g2056 Clacu-Chr11:31513777 2.00E-149 dispersed
Clacu10g2037 Clacu-Chr10:33832738 Clacu11g2056 Clacu-Chr11:31513777 2.90E-124 dispersed
Clacu11g0675 Clacu-Chr11:6517974 Clacu11g2056 Clacu-Chr11:31513777 4.70E-78 dispersed
Clacu11g1315 Clacu-Chr11:22418854 Clacu11g2056 Clacu-Chr11:31513777 4.70E-83 dispersed
Clacu11g2056 Clacu-Chr11:31513777 Clacu02g0349 Clacu-Chr2:3202035 3.00E-80 wgd
Clacu11g2056 Clacu-Chr11:31513777 Clacu08g1115 Clacu-Chr8:21114416 6.70E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73998 PF00069 Pkinase 1.10E-44 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g2056 - - - 0.0