Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g2066 ATGCGTCAGCCACAAAACCAACCAATAATAACTGATCACGTGTCGGTATTCGCGCACCCAACTGACAGCTACGAGATCCACCGGATAACCTGGAATCGCCGGTCGCCAACCAAATACATACAAGTTAGTTCCCTCTTTTTTCTCCCTTTCACATTCATTTTCTTCGCTCCAAAAGAAAAGCCTCCTCAAAGATTCTGCTTGTCTTCCTCACATTTTCTCCTCTTTAGGGTTTCCCTTTCTCTTCTATTTTCCCCACCACCAACACAAACCGCTAAGCTTCTCAATTACGCTCCTCCTCACTTCTGGGCCGTTTTGATAAGTTATTCCACTTGGTTTGCTTTGTGGCTTCATAAAGCTTCTATCGATTTGAGTAATACATGTAAAGCCAGTTTTCCACTTTACTTTATTCGACAACTTTTGGAGGATTGTGATTTCGTCGAAAATATGGCTACGGGTATAGATTTTTCACCTCCCTTCACTCTACTGGAAGGCGGCGGATACAATAAGGACAATGTATCAGCCACAGATGACGAAAGTTCTGATAGCTTTAATAGTTTGAAACAGATGAGCAGTGGGAAGCCTCCCCGACACCTCTCAGTAATGCGACATAGTCTGAGCTCCATAAAGCTCCTTGGCCAAGCTGATTTAAGCTTGGATGCTGAAACTCTTGGGAATAAGTCACCTGATGGAAAAGCGGGATACTTACCTGTCTTTAGATCGGGTAGCTGTTCAGAAAGGGGACCTAAACAGTACATGGAAGACGAGCACATATGCATAGATGATCTTGTTGAACATGTCCATGCTTGTGCAGATTTCACTTCTCCTGGAGCTTTCTATGGTGTATTTGATGGCCATGGGGGTACAGACGCTGCTGCTTTTGTTAGAAAGAACATCCTCAGATTCATAGTCGAGGACTCCTGTTTTCCAATTAGTGTGGAGAAGGCAATTAAGAGTGCTTTTTTGAAAGCTGATTATGCTTTTGCTGATGCTAGTTCTCTGGATATCTCCTCTGGCACAACTGCCCTGACTGCTTTCATTTTTGGAAGAACAATGATTATTGCGAATGCTGGGGATTGTCGAGCTGTTCTGGGGAGGAGGGGGAAGGCTATCGAGGTGTCGAAGGATCACAAGCCCAACTGTGCTTCTGAAAAGCTCAGAATTGAGAAACTGGGTGGGGTGATCTATGATGGGTACCTCAATGGCCAGCTCTCTGTTGCACGTGCTATAGGAGATTGGCACATGAAAGGTGCTAAGGGTTCTGCTTGCCCACTGAGTGCCGAGCCAGAGCTGCAGGAACTGAATTTGACGGAGGAAGATGAATTTCTAATAATGGGATGCGATGGGCTTTGGGATGTGATGAGCAGCCAGTATGCTGTTACAATGGCAAGGAAAGAGCTGATGCTACATAATGATCCAGAAAGGTGTTCAAGAGAGCTGGTAAGAGAGGCACTAAAGCGCAATACATGCGATAATTTAACTGTTATTGTGGTCTGTTTTTCGGCTGATCCGCCCCCTCGGATAGAAATTCCTCAAACTCGAGTAAGGAGAAGCATATCATTAGAAGGGCTGAATTTGTTGAAGGGTGTATTGGACTGCAATTCTTGA 1605 44.86 MRQPQNQPIITDHVSVFAHPTDSYEIHRITWNRRSPTKYIQVSSLFFLPFTFIFFAPKEKPPQRFCLSSSHFLLFRVSLSLLFSPPPTQTAKLLNYAPPHFWAVLISYSTWFALWLHKASIDLSNTCKASFPLYFIRQLLEDCDFVENMATGIDFSPPFTLLEGGGYNKDNVSATDDESSDSFNSLKQMSSGKPPRHLSVMRHSLSSIKLLGQADLSLDAETLGNKSPDGKAGYLPVFRSGSCSERGPKQYMEDEHICIDDLVEHVHACADFTSPGAFYGVFDGHGGTDAAAFVRKNILRFIVEDSCFPISVEKAIKSAFLKADYAFADASSLDISSGTTALTAFIFGRTMIIANAGDCRAVLGRRGKAIEVSKDHKPNCASEKLRIEKLGGVIYDGYLNGQLSVARAIGDWHMKGAKGSACPLSAEPELQELNLTEEDEFLIMGCDGLWDVMSSQYAVTMARKELMLHNDPERCSRELVREALKRNTCDNLTVIVVCFSADPPPRIEIPQTRVRRSISLEGLNLLKGVLDCNS 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31577997 31582296 - ClG42_11g0206600.10 Clacu11g2066 262943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g2066 534 PANTHER PROTEIN PHOSPHATASE 2C 201 499 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Clacu11g2066 534 ProSitePatterns PPM-type phosphatase domain signature. 278 286 IPR000222 GO:0043169(InterPro)
Clacu11g2066 534 CDD PP2Cc 238 499 IPR001932 -
Clacu11g2066 534 SMART PP2C_SIG_2 254 499 IPR001932 -
Clacu11g2066 534 MobiDBLite consensus disorder prediction 170 196 - -
Clacu11g2066 534 SMART PP2C_4 229 497 IPR001932 -
Clacu11g2066 534 Gene3D - 225 502 IPR036457 -
Clacu11g2066 534 FunFam Probable protein phosphatase 2C 22 224 502 - -
Clacu11g2066 534 SUPERFAMILY PP2C-like 233 500 IPR036457 -
Clacu11g2066 534 Pfam Protein phosphatase 2C 240 491 IPR001932 -
Clacu11g2066 534 ProSiteProfiles PPM-type phosphatase domain profile. 239 499 IPR001932 -
Clacu11g2066 534 MobiDBLite consensus disorder prediction 177 192 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1758 Clacu-Chr2:31141035 Clacu11g2066 Clacu-Chr11:31577997 1.10E-88 dispersed
Clacu06g0411 Clacu-Chr6:4916388 Clacu11g2066 Clacu-Chr11:31577997 4.40E-82 dispersed
Clacu11g2066 Clacu-Chr11:31577997 Clacu09g0481 Clacu-Chr9:4141035 1.80E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g2066 K14803 - csv:101205355 764.222