Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g2067 ATGCTGTGGGTTGCGGCTAAGATAGAAAGTGATTCTCCTCCGCTTTACGGCGATCCCGTTTCGCCTCATCCCGAGGTGGGTACCCCATCCAAAAGCCCATTCTCTAAATTTAAGCCCAGGCCCAAATTGGTTATTAAGAAAGTTGAAAGTGGGAGAATTTTGAGAGTGGCTGTGGTGAAACCTAATCGTCGTCCACTGGAAGAGGCCGAGTCCGAGCCGCCCACTAGGGCGGAAGGGCCCACCTGTGGAGTATCGACGAGCGACTGTAGATGCTGTCACTGTTGCTGCACAAAGATTGGGCCTCCAAGTAAAGAACACTCCCCGACTTTTGCTTCATCAACCAATGAAGGAATTTTCTGCTTTTTGTTTTCGAAAAATTTTCACGTGATTTCGCTGAGGTGCGAGTATTTGCCAGCTTCCATCAAACCATCGGTTGTGAACATTGGAGCTATTTTATCTTTTAATTCTACCATTGGAAAAGTTGCTACGATTGCCATTGAAGAAGCTGTGAAAGATGTGAATGCGGATCCCAGCATTCTTCCTGGAACCGACCTTTGGTTACAAATGCAAAATTCCAACTGTAGTGGGTTTCTGGGCATGGTCGAAGTTTTGCAACTTATGGAGAATGAAACCGTTGCCATCATAGGCCCCCAATCTTCTGTGGTTGCCCACATTTCATCCCAAGTTGCAACTGAGTTCCAAGTCCCTCTGGTATCATTTTCGGCTACTGATCCTACTCTCTCTGCCCTTCAGTTTCCTTTTTTTGTGAGGGCTGCACAGAGTGATTTGTTTCAGATGACTGCAGTTGCTGAGATTGTTGAGTATTATAGTTGGAAAGAGGTCATTGCTATATATGTTGATGATGATTATGGGTGGAATGGAGTTGCGACATTGGGTGATAAACTTGCTGAAAGGCGTTGTAAAATCACATATAAGGTGGGTATTAGTCCAGATTCTGTGGATAATCGAGCCCGAGTTATGGATCAACTTGTTAAAGTTGCACTGATGGAATCAAGAGTTATGGTTCTCCATGTGAACCCTGGATTAGGCGCCTTAGTCTTTTCAGTGGCTAAGTACCTCCAAATGATAGGCAATGGATATGTATGGATAGCAACCGATTGGCTTTCGTCTCTATTAGACAGTGTTGTTCCTCTTCCTCTTGAGATCATGGAGTCGATGCAAGGAGTTCTTTCTCTACGACAGCACACAGCAGAATCAGATAAAAAGAGAGCTTTTCTTTCCAGGTGGAATAAGTTAACAGGTGGCTCTTTAGGTCTGAATGCTTATGGTCTGTATGCTTATGACTCTGTTTGGGTGGTTGCTCATGCCATCGACAAATTTTTCAATCAAGGTGGGGTCATCACACACTCTAATGACTCCAAGCTGCATTTCAGTGAAAGTGGTGATCTGCATCTTGAAGCTATGACTATCTTTGATGGTGGAAACCGCCTGCTGAATAACATATTGGAGAGCGATTTTGTTGGTCTGACTGGTGCCATTAAGTTTGATTTGGACAGATCCCTTCTTCATCCTGCATATGATATTATTAATGTTATTGGGACTGGATCAAGAAGGGTGGGTTACTGGTCCAACTATTCTGGTTTATCAATTGATGTTCCTGAGACACTCTATTCCAAACCACCTAATCGTTCACATGCAAATCAGAAGCTGTATGAGGTGATATGGCCAGGAAATACAATAGAAAAGCCTCGAGGATGGGTATTTCCGAACAATGGGAAGCTATTAAAAATTGGAGTGCCACTTCGGGTCAGTTATAAGGAGTTTGTATCAAAAATCAAAGGGACCGAAAATTTCCAGGGTTTCTGCATCGATGTGTTTACAGCTGCTGTAAACTTATTGCCGTATGCTGTCCCCCACCAATTTATAGCCTTTGGTGATGGCCATCACAATCCAAATTACACAGATCTTGTGTACGGGATTACAACCGGCAAATTTGATGCTGTTGTTGGAGACATAGCCATTGTCACAAGCCGGACAAGGCTTGTAGATTTTACTCTGCCATATACTGCTTCTGGACTAGTTGTTGTGGCCCCATTCAAAAAACTGAACACTGGGGCTTGGGCTTTCCTGCATCCATTTTCTCCAGCCATGTGGATGGTCACAGCTAGTTTCTTCCTTTTTATTGGAATAGTTGTCTGGATTCTGGAGCATAGGACGAATGATGAATTCAGAGGCCCACCTAGAAGACAATGTATTACAATTTTATGGTTTAGCTTCTCAACTCTATTTTTTGCCCATAAGGAAAACACAATTAGCACTCTTGGCCGTCTAGTGCTGATCATATGGCTCTTTGTGGTTTTGATAGTAAATTCTAGCTACACTGCCAGTTTAACATCCATTCTCACAGTGCAGCAGCTATATTCTCCAATCACAGGAATCGAAACCTTGAGGGAAGGTGGTGAACCGATAGGTTTCCAAGTTGGATCATTTGCTGAACGTTATCTGAGCGAGGAGCTGAACATATCTAGATCCAGGCTTGTTCCTCTTGGATCACCCGAAGAATATGCCAAGGCACTTGAGCTTGGCCCTGACAAGGAGGGGGGTGTTGCTGCTATAGTTGACGAACTTCTATATGTAGAAAGTTTCCTCTCGAGACAATGTTCATTCAGAGTTGTTGGTCAAGAGTTCACAAAAAGTGGCTGGGGTTTCGCATTCCCGCGAGATTCTCCCTTGGCCATAGACTTGTCAACGGCCATTTTGCAGCTCTCGGAGAATGGTGATCTGCAACGGATTCATGACAAATGGCTAGTGAAAAGTGCCTGCACCATGGACAATGCAGAGCTAGAATCAGACCGGCTTCAACTTAAGAGCTTCTGGGGTCTATTTCTAATCTGTGGGATAGTTTGTTTCATTGCCCTTGCCATATATTGCTTTCAGATTATTCGTCAGCTATACCGTGGCGATGCACAAGAATCTGATCTGTCTAGCAGTAGTGGATCACATTCTAACCGCTTTCGAAGAATTATATCGATATTGGATGAGAAGAAAGAACCGTCTAAAAGGGGAAGCAAAAGAAGGAAAGTTGAGAAATCATCTGAAAATGATAAGGACGATGATAATTTGGAGGCTGATCCTTGA 3099 43.72 MLWVAAKIESDSPPLYGDPVSPHPEVGTPSKSPFSKFKPRPKLVIKKVESGRILRVAVVKPNRRPLEEAESEPPTRAEGPTCGVSTSDCRCCHCCCTKIGPPSKEHSPTFASSTNEGIFCFLFSKNFHVISLRCEYLPASIKPSVVNIGAILSFNSTIGKVATIAIEEAVKDVNADPSILPGTDLWLQMQNSNCSGFLGMVEVLQLMENETVAIIGPQSSVVAHISSQVATEFQVPLVSFSATDPTLSALQFPFFVRAAQSDLFQMTAVAEIVEYYSWKEVIAIYVDDDYGWNGVATLGDKLAERRCKITYKVGISPDSVDNRARVMDQLVKVALMESRVMVLHVNPGLGALVFSVAKYLQMIGNGYVWIATDWLSSLLDSVVPLPLEIMESMQGVLSLRQHTAESDKKRAFLSRWNKLTGGSLGLNAYGLYAYDSVWVVAHAIDKFFNQGGVITHSNDSKLHFSESGDLHLEAMTIFDGGNRLLNNILESDFVGLTGAIKFDLDRSLLHPAYDIINVIGTGSRRVGYWSNYSGLSIDVPETLYSKPPNRSHANQKLYEVIWPGNTIEKPRGWVFPNNGKLLKIGVPLRVSYKEFVSKIKGTENFQGFCIDVFTAAVNLLPYAVPHQFIAFGDGHHNPNYTDLVYGITTGKFDAVVGDIAIVTSRTRLVDFTLPYTASGLVVVAPFKKLNTGAWAFLHPFSPAMWMVTASFFLFIGIVVWILEHRTNDEFRGPPRRQCITILWFSFSTLFFAHKENTISTLGRLVLIIWLFVVLIVNSSYTASLTSILTVQQLYSPITGIETLREGGEPIGFQVGSFAERYLSEELNISRSRLVPLGSPEEYAKALELGPDKEGGVAAIVDELLYVESFLSRQCSFRVVGQEFTKSGWGFAFPRDSPLAIDLSTAILQLSENGDLQRIHDKWLVKSACTMDNAELESDRLQLKSFWGLFLICGIVCFIALAIYCFQIIRQLYRGDAQESDLSSSSGSHSNRFRRIISILDEKKEPSKRGSKRRKVEKSSENDKDDDNLEADP 1032
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31582500 31591435 + ClG42_11g0206700.10 Clacu11g2067 262944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g2067 1032 FunFam Glutamate receptor 577 693 - -
Clacu11g2067 1032 SUPERFAMILY Periplasmic binding protein-like II 560 925 - -
Clacu11g2067 1032 Pfam Ligand-gated ion channel 924 955 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Clacu11g2067 1032 Gene3D - 573 691 - -
Clacu11g2067 1032 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 146 1000 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Clacu11g2067 1032 Pfam Bacterial extracellular solute-binding proteins, family 3 600 702 IPR001638 -
Clacu11g2067 1032 SMART GluR_14 583 925 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Clacu11g2067 1032 CDD PBP1_GABAb_receptor_plant 147 536 IPR044440 -
Clacu11g2067 1032 Gene3D - 692 820 - -
Clacu11g2067 1032 MobiDBLite consensus disorder prediction 997 1024 - -
Clacu11g2067 1032 FunFam Glutamate receptor 693 823 - -
Clacu11g2067 1032 Gene3D - 889 922 - -
Clacu11g2067 1032 Gene3D - 261 535 - -
Clacu11g2067 1032 FunFam Glutamate receptor 261 415 - -
Clacu11g2067 1032 FunFam Glutamate receptor 819 927 - -
Clacu11g2067 1032 Pfam Receptor family ligand binding region 164 520 IPR001828 -
Clacu11g2067 1032 MobiDBLite consensus disorder prediction 1 37 - -
Clacu11g2067 1032 Gene3D - 852 888 - -
Clacu11g2067 1032 Gene3D - 164 510 - -
Clacu11g2067 1032 PIRSF IGluLR_plant 114 1031 IPR017103 -
Clacu11g2067 1032 CDD GluR_Plant 580 923 - -
Clacu11g2067 1032 SUPERFAMILY Periplasmic binding protein-like I 142 574 IPR028082 -
Clacu11g2067 1032 MobiDBLite consensus disorder prediction 997 1032 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2165 Clacu-Chr1:33115803 Clacu11g2067 Clacu-Chr11:31582500 0.00E+00 dispersed
Clacu02g0891 Clacu-Chr2:10914865 Clacu11g2067 Clacu-Chr11:31582500 2.60E-285 dispersed
Clacu02g0893 Clacu-Chr2:11050880 Clacu11g2067 Clacu-Chr11:31582500 1.30E-260 dispersed
Clacu08g1624 Clacu-Chr8:26015346 Clacu11g2067 Clacu-Chr11:31582500 1.00E-103 dispersed
Clacu11g1955 Clacu-Chr11:30530072 Clacu11g2067 Clacu-Chr11:31582500 1.10E-104 dispersed
Clacu11g2067 Clacu-Chr11:31582500 Clacu02g0340 Clacu-Chr2:3105105 9.40E-276 wgd
Clacu11g2067 Clacu-Chr11:31582500 Clacu08g1124 Clacu-Chr8:21222893 1.50E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g2067 K05387 - csv:101204862 1673.29