Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g2071 ATGCGTCCCTTCAGGTACCTTGCCGGCGTCAACTCCTCCGCCATCTCCGACACGGCTGAGCCCGAGAGGTATGACTCTGACTTCGTCATAATCCTCGCCGCCCTCCTCTGTGCCTTGATTTGCGTTCTTGGTCTTGTTGCTGTTGCCCGCTGCGCCTGGCTACGCCATCTCGCCGGCGATGGAGGCGGCGCTGCTTCCACTCGTCCTCCTCCGCCTCCTGCCTCCAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCGAAGTACACCTTCACCGCCGAGTTTTCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGAGATGAAATCCGGGTGCTGCCGCAGTGTGGCCATGGATTTCACATGTCCTGCATCGATACGTGGTTTCGATCTCACTCATCCTGTCCTTCCTGCCGTCAGATTCTGGTGGTAAGTCAGTGCCAGAAGTGCGGCGGTTTTCCAGCGAGCTCGAGTTCGAACGGTGTGACGGAATCCAGAGTGAAAGAGGAAGGAGATGATAAGACGAATAGCCGTTCTGGTAGTTCTGTTTGTGTTGTGAATATTGACTTCAAATCTGTCGTCGATCTTCAGCCGAGATGGCATAACTTTACAGTACAGGCGATGAATTCAAAAAGGGGAACAGTATCAGCATCATGTGGATGGTGGACATTGCAACTGCCAATGTGA 705 53.9 MRPFRYLAGVNSSAISDTAEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGVTESRVKEEGDDKTNSRSGSSVCVVNIDFKSVVDLQPRWHNFTVQAMNSKRGTVSASCGWWTLQLPM 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31605524 31606403 + ClG42_11g0207100.10 Clacu11g2071 262948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g2071 234 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Clacu11g2071 234 MobiDBLite consensus disorder prediction 160 186 - -
Clacu11g2071 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 149 IPR013083 -
Clacu11g2071 234 CDD RING-H2_EL5-like 102 145 - -
Clacu11g2071 234 Pfam Ring finger domain 102 145 IPR001841 -
Clacu11g2071 234 SUPERFAMILY RING/U-box 84 151 - -
Clacu11g2071 234 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 23 178 IPR052788 -
Clacu11g2071 234 SMART ring_2 103 144 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2637 Clacu-Chr1:36552310 Clacu11g2071 Clacu-Chr11:31605524 7.70E-18 dispersed
Clacu10g0012 Clacu-Chr10:537915 Clacu11g2071 Clacu-Chr11:31605524 1.30E-42 dispersed
Clacu10g2235 Clacu-Chr10:35307036 Clacu11g2071 Clacu-Chr11:31605524 1.30E-14 dispersed
Clacu11g2071 Clacu-Chr11:31605524 Clacu02g0070 Clacu-Chr2:710233 4.00E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g2071 - - - 0.0