Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g2073 ATGCCCAGACAAAAATGGCTGGCTCTCCATGCTCCACCCACTGCTTTCTATTACTTATCGTCTCTTCAAATTTCTCCACCTCATATTCTTTCAACCCCCAATGCTCTGCGCATACCTTTTCTCTTATCTGCTTCTCTTCTTCCTCCCTCTGCGACACTTTTGGCTCCAACCTCATCAATGGCGACTGATCAGAATACGTCCCAAAGAAGGGATTCCAATACCCAGCTTCTCGACGAGCTCGAGGCTCTGAGCCAATCGCTCTACCAAACCCACATCTCAACTACTCGAAGAACAGCCTCGCTTGCTCTGCCTCGGAGCTCTCTTCCTTCTATTCCCTCCGCTGAAGATGTGGGCATCACTAGAATTGACGATAAACTCAACAAGCCGAGGTCCCGGCGGATGTCTCTGTCGCCGTGGCGTTCTCGCTCCAAGCTCGACGATGAGGATAAATCGCAAACAGAACGAAACAGGGTTTCTTCGAGTCAGCCGGAGAGGAGGAAGTTGGATGAAGCGGCGCCGGAGAAGAAGGGGATTTGGAATTGGAAACCGCTTCGAGCTCTCACCCACATCGGAATGCAGAAGATAAGTTGCTTGTTCTCTGTTGAAGTCGTCACCGTTCAGGGCCTTCCCGCCTCCATGAATGGGCTTCGACTTTCCGTTTGCGTGAGAAAGAAAGAGACCAAAGATGGAGCTGTCAACACAATGCCGTCTAGGGTTTCGCAAGGCGCTGCGGATTTCGAAGAGACGTTGTTCCTCAAATGCCATGTTTATTGCACTCCTGGAAACGGCAAGCCTCTGAAGTTCGAGCCTCGTCCGTTTTGGATTTACGCTTTCGCTGTAGATGCTCAAGAGCTTGATTTCGGGAGAAGCCCAGTGGATTTGAGTAAACTGATAGAAGAATCTATGGAGAAGAGTTACGAAGGAGCGCGAGTTCGCCAGTGGGACATTAGCTTCAATCTGGCGGGGAAAGCCAAAGGGGGAGAACTCGTCGTCAAATTAGGGTTTCAGATTATGGAGAAAGACGGAGGTATTGGAATTTACAATCAAGCACAGCCAAAGGAATCGAAATCGGGAAAATCATTCGGGAGAAAGCAATCGAAGACCTCATTCAGCGTTCTTAGTCCGAGATTAACCAGTCAAAGTGAAGCTTGGACTCCATCGCAAACAAGAGCTTCGGCGGATCTTCCAGGAATCGATGACCTAAACTTAGATGAACCAGCGCCAATTCCGTCAACCTCGCCATCTATTAAAAAATCAGAAGAACCGAAGATTGAAGATCTCGATCTTCTAGACTTTGAAGTTGTCGACAAAGGAGTAGAGATTCAGGACAAAAAGGAAGAAGTGGAAAAAGAAGAATCTGAAAAATCAGTGGAAGAAAAGTCGACTTCAAACGAGGTAGTCAAGGAAGTTGTACTCGATCAGGCTCATTTGAATCGATTATCAGAACTCGATTCGATCGCACAGCAAATCAAAGCTCTGGAGTCGATGATGGGAGATGAAAACTCTGGGAAAAACGATGAAGAATCCGATTCGCAGAGACTTGATGCCGATGAAGAAAACGTAACGAGGGAATTTCTTCAGATGCTCGAGGAAGAAGACGGTACTATCTCATACAACAATAACAGTAAACTGAGTTACCCTGAAATTCCTCCTCTCCAACTTGAAGAAACAGAGGATTCCTCCGAGACTGAATCCAAATCATACATCTCAGATCTTGGGAAGGGGTTAGGCTGCGTTGTTCAAACCAGAGATGGAGGCTACTTAGCCGCCATGAACCCACTGAACACCCAAGTGTCAAAGAAGGAAACTCCAAAACTAGCGATGCAGATTTCGAAACCATTCATCTTAGCCTCCACACAGTCGCTGAGTGGGTTTGAATTGTTTCAAAGAATGGCTAGCAGTGGACTAGAGGAACTGAGCTCAAAAGTAGTAGCATTAATGTCATCGGATGAACTCATGGGGAAAACAGCAGAACAAATAGCATTTGAAGGAATTGCTTCAGCAATAATTCAAGGGAGAAACAAAGAAGGAGCAAGCTCCACCGCGGCCGCTCGCGCCATTGCTGCTGTGAAAGCAATGGCGAGTGCATTGAGCACAGGAAGGAAAGAGAGGATTTCGACAGGAATTTGGAACTTGAACGAAGTCCCTCTTACCATCGAAGAGATTCTAGCATTGTCAATGCAGAAGCTGGAAGAAATGAGCATGGAAGCCTTGAAAATCCAGGCGGAAATGGCGGAGGAAGAAGCCCCATTTGACGTCTCTGCTCTGAATGTGAAAATTGGGGGAAAAGATCAAAATCAAATCCACCCATTGGACTCTGCAGTTCCATATGAAGATTGGATGAAGAAATTCAACTTCAGTGGATATGGAAACAAAAGGGAAGAAGATCAAGAAGAAGGGATCACAGTGGGGGTGGTGGTGCAGCTAAGAGACCCACTAAGGAGATACGAATCAGTAGGGGGTCCAGTGGTGGGTCTGATCCATGCAAAAGAAGCAGAAATGGAAGAGAAAACAAGCAAATACGAAGAGGAAAGAAGATTCAAGGTCACGAGCATGCACGTGGGAGGGTTGAAGGTGAGGGGCGGAGGGAAGAGAAACGCGTGGGACAGTGAAAAGCAGAGGCTGACGGCGATGCAATGGCTGGTGGCGTATGGGATTGGGAAGGCGGCGAAGAAGGGAAGACATTTGGCATCTAAGGGACCAGATTTGCTGTGGAGCTTATCGTCCAGAGTAATGGCGGACATGTGGCTCAAACCTATACGAAACCCAGATGTTAAGTTTGCTAATTAG 2790 47.28 MPRQKWLALHAPPTAFYYLSSLQISPPHILSTPNALRIPFLLSASLLPPSATLLAPTSSMATDQNTSQRRDSNTQLLDELEALSQSLYQTHISTTRRTASLALPRSSLPSIPSAEDVGITRIDDKLNKPRSRRMSLSPWRSRSKLDDEDKSQTERNRVSSSQPERRKLDEAAPEKKGIWNWKPLRALTHIGMQKISCLFSVEVVTVQGLPASMNGLRLSVCVRKKETKDGAVNTMPSRVSQGAADFEETLFLKCHVYCTPGNGKPLKFEPRPFWIYAFAVDAQELDFGRSPVDLSKLIEESMEKSYEGARVRQWDISFNLAGKAKGGELVVKLGFQIMEKDGGIGIYNQAQPKESKSGKSFGRKQSKTSFSVLSPRLTSQSEAWTPSQTRASADLPGIDDLNLDEPAPIPSTSPSIKKSEEPKIEDLDLLDFEVVDKGVEIQDKKEEVEKEESEKSVEEKSTSNEVVKEVVLDQAHLNRLSELDSIAQQIKALESMMGDENSGKNDEESDSQRLDADEENVTREFLQMLEEEDGTISYNNNSKLSYPEIPPLQLEETEDSSETESKSYISDLGKGLGCVVQTRDGGYLAAMNPLNTQVSKKETPKLAMQISKPFILASTQSLSGFELFQRMASSGLEELSSKVVALMSSDELMGKTAEQIAFEGIASAIIQGRNKEGASSTAAARAIAAVKAMASALSTGRKERISTGIWNLNEVPLTIEEILALSMQKLEEMSMEALKIQAEMAEEEAPFDVSALNVKIGGKDQNQIHPLDSAVPYEDWMKKFNFSGYGNKREEDQEEGITVGVVVQLRDPLRRYESVGGPVVGLIHAKEAEMEEKTSKYEEERRFKVTSMHVGGLKVRGGGKRNAWDSEKQRLTAMQWLVAYGIGKAAKKGRHLASKGPDLLWSLSSRVMADMWLKPIRNPDVKFAN 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31615775 31618564 - ClG42_11g0207300.10 Clacu11g2073 262950

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g2073 929 MobiDBLite consensus disorder prediction 139 172 - -
Clacu11g2073 929 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 192 340 IPR019448 -
Clacu11g2073 929 Coils Coil 441 461 - -
Clacu11g2073 929 MobiDBLite consensus disorder prediction 496 518 - -
Clacu11g2073 929 MobiDBLite consensus disorder prediction 372 423 - -
Clacu11g2073 929 Coils Coil 728 748 - -
Clacu11g2073 929 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 60 548 IPR039614 -
Clacu11g2073 929 MobiDBLite consensus disorder prediction 372 392 - -
Clacu11g2073 929 Pfam PMI1/PMIR1-2, C-terminal domain 605 754 IPR048972 -
Clacu11g2073 929 MobiDBLite consensus disorder prediction 500 518 - -
Clacu11g2073 929 ProSiteProfiles C2 NT-type domain profile. 187 339 IPR019448 -
Clacu11g2073 929 MobiDBLite consensus disorder prediction 122 172 - -
Clacu11g2073 929 MobiDBLite consensus disorder prediction 444 464 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g2073 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1153 Clacu-Chr8:21580295 Clacu11g2073 Clacu-Chr11:31615775 2.50E-27 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g56 . . . . . . . . . . Cma01g02033 Cma09g00032 Car01g01601 . . Cpe06g00007 . . . . . . . . . . . . . . . . . . . . Csa04g02729 . . . Blo18g00735 . Bda01g01571 Bpe02g01765 . . . Sed12g2182 Cmo01g02088 Cmo09g00033 . . . Car09g00027 . Cpe02g00020 Bhi09g02837 Tan01g5147 Cmetu07g1999 . . Mch11g0039 . Cla11g01842 Cam11g1910 Cec11g1935 Cco11g1947 Clacu11g2073 Cmu11g1879 Cre11g2287 . . Chy07g00415 Cme07g00034
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007845 1 1 1 0 1 0 2 0 0 1 1 1 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 1 1 1 29