Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g2079 ATGGGGCTCAAAGTGCTTTCCGCTCTCGACACTGCCAAAACCCAATTGTACCATTTCAAGGCCATCGTCATCGCCGGGATGGGCCTCTTCACCGACGCCTACGATCTCTTCAGTATCACTCCCATTATGACTCTCCTCGGACGTGTCTATTACCCTGACCAACACTACGACATTCCGGCCGCCGTCAAATCCGCTATGCTCGCGGTGGCTCTTCTGGGGACGGCGATGGGTCAACTGGTGTTTGGCATACTCGGAGACAGAGTGGGAAGGCGGCGCGTGTACGGACTCGCATTGGCGCTCATGGTGGTGAGTTCCATCGACTGTGGATTCTCAATCTGCACCACCAGGAGCTGTGTCCTTGTGAGCCTAGGGTTTTTCAGGTTCCTTCTGGGGCTGGGAATTGGGGGAGATTACCCATTGTCGGCGACCATAATGTCGGAGTTCGCTAACAAGAAGACACGTGGAGCGTTCATAGCGGCGGTGTTCTCGATGCAGGGATTCGGGATCTTGGCCAGCGCCACCGTCACCATGATCGTCTGCTCCATATTCGATCGCGCCTCTAACTACCCAACCAGTGATCGTACTCCGATGGGGGCCGATATTGCTTGGAGGCTGATTCTCATGCTCGGCGCTGTGCCGGCGGCGATGACTTATTATTGGCGAATGATGATGCCGGAAACTGCCAGATACACGGCTCTGGTTGAGAGGAATGTGGAACAAGCGGCAAAGGATATGGAAAAAGTGTTGGATGTGTCGTTGGTTGATATCACGGAAGACAGCCCTGTGCCCCCTTCTCCCCCAAATTTCTCCTTCTTTTCCAACCAATTTCTTCGCCGCCATGGCCGCGATCTCCTTTCCTGTGCCGCCTCCTGGTTCCTCGTCGACATCGTCTTCTACAGCAGCAACCTCTTCCAATCCAAAATCTACACCCAATTCCTTCCTTCCAACCAAAAATCCATCAACGTCTACCGTCAAGCCTTCAACGAAGCCAGACTCCAAGCCATCGTCGCCGTCTGTTCCACCATTCCTGGCTACTGGATCTCCGTCTTTTTCATCGACCGTCTCGGCCGAGTCACCATCCAAATCCTCGGATTTCTCTTCATGGCCCTCGGCTATCTCCTCATCGCCATCCCCTACAACTCTTTCTGGGTCTCCGATAAACACAAATACGGTTTCATGCTATTCTACTGCCTCACATTCTTCTTCTCAAATTTCGGCCCCAACACCACCACTTTCATTCTCCCCGCCGAGCTCTTTCCCGCTAGGTTCCGTTCCACCTGCCATGGAATCTCCGGCGCCGCCGGAAAAATCGGGGCCATCATCGGAGCCGTGGGCTTCCTGTGGGCCTCGCACGACCGGAAGGACGGGGGAATTGGGATGAAGGCATCGTTGATGTTGCTTGGTGGGGTGAGTCTTGCGGGAGTGGCGGTCACGTATTTCTTCACCAGAGAAACCAATGGAAGGTCGTTGGAAGAGAATGAAAAGGAAGATGAATACGCTGGGATTTTGTTTCTCAGGTGCTTTCACTTTCACCCTCACCCTCACCACGCTACTGCTACTGCCTACTCCCGCCCGTCTGTTGCTCAACACGACGACATGTCGTCACGTTCTACCTCCAACTCCGTTCCAACTACTACCACACCAATTCATTATTAG 1656 53.8 MGLKVLSALDTAKTQLYHFKAIVIAGMGLFTDAYDLFSITPIMTLLGRVYYPDQHYDIPAAVKSAMLAVALLGTAMGQLVFGILGDRVGRRRVYGLALALMVVSSIDCGFSICTTRSCVLVSLGFFRFLLGLGIGGDYPLSATIMSEFANKKTRGAFIAAVFSMQGFGILASATVTMIVCSIFDRASNYPTSDRTPMGADIAWRLILMLGAVPAAMTYYWRMMMPETARYTALVERNVEQAAKDMEKVLDVSLVDITEDSPVPPSPPNFSFFSNQFLRRHGRDLLSCAASWFLVDIVFYSSNLFQSKIYTQFLPSNQKSINVYRQAFNEARLQAIVAVCSTIPGYWISVFFIDRLGRVTIQILGFLFMALGYLLIAIPYNSFWVSDKHKYGFMLFYCLTFFFSNFGPNTTTFILPAELFPARFRSTCHGISGAAGKIGAIIGAVGFLWASHDRKDGGIGMKASLMLLGGVSLAGVAVTYFFTRETNGRSLEENEKEDEYAGILFLRCFHFHPHPHHATATAYSRPSVAQHDDMSSRSTSNSVPTTTTPIHY 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31635177 31637767 - ClG42_11g0207900.10 Clacu11g2079 262956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g2079 551 Gene3D MFS general substrate transporter like domains 17 502 IPR036259 -
Clacu11g2079 551 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 6 493 - -
Clacu11g2079 551 FunFam Inorganic phosphate transporter 1-6 17 501 - -
Clacu11g2079 551 Pfam Sugar (and other) transporter 23 494 IPR005828 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Clacu11g2079 551 CDD MFS_PhT 22 485 - -
Clacu11g2079 551 ProSitePatterns Sugar transport proteins signature 2. 129 154 IPR005829 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Clacu11g2079 551 MobiDBLite consensus disorder prediction 522 551 - -
Clacu11g2079 551 ProSiteProfiles Major facilitator superfamily (MFS) profile. 21 486 IPR020846 GO:0022857(InterPro)
Clacu11g2079 551 SUPERFAMILY MFS general substrate transporter 9 497 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0092 Clacu-Chr7:1336078 Clacu11g2079 Clacu-Chr11:31635177 1.90E-142 dispersed
Clacu08g0693 Clacu-Chr8:16525829 Clacu11g2079 Clacu-Chr11:31635177 4.00E-137 dispersed
Clacu11g2079 Clacu-Chr11:31635177 Clacu05g0483 Clacu-Chr5:4012247 1.40E-140 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g2079 K08176 - csv:101218554 920.998