Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g2082 ATGTCGGGATCTGAGACCGGAGTGATTTCCAGCGGCGAACCCTTCACCATCGGTCTCCACAAGAATTCAGTACAGTCACAACAGCCGGTCATGCAGGGCATGCATTTACCCTTCGGCGTCGATGGCGTCTACAAGCCCGTTGCCGCCGCCTCTCCCACCTACCAGTCCTCCGGCGTCGGAGTTGCCGGTAATGCTGGTGCCGATGGATCTGCTCGTGAAGCTTTCGTTAACATGAATTCGCAAAGCGAGCCTGTAAAGAGGAAGAGAGGGAGGCCTCGGAAGTATGGGCCAGATGGCAGTATGGCAATGGCTCCTGCAGTCCGCTCTCCCGCCGCAACTCAGTCCAGTGGAGGTTTTTGTCCTCCACCCACCGCCGCGCCTCCGTCGGGAGGATCAGCCACTCAAACTTCTTTGAAGAAAGCCAGAGGCAGACCCCCTGGCTCTTCTAGCAAAAAGCAGCAGTTGGATGGCTCGGGGTCAGCAGGAGTTGGATTTACCCCACATGTCATCACCGTAAAAGCTGGAGAGGATGTATCTTCGAAAATAATGTCATTTTCACAGAATGGTCCTAGAGCTGTTTGTATCCTTACAGCAAATGGAGCAATATCCAATGTGACTCTACGTCAACCAGCCATGTCTGGTGGAACCGTGACTTACGAGGGGCGATTCGAGATTTTGTCGCTATCTGGGTCCTATCTCCTCTCTGAGAATGGCAGCCAGCGGAGTCGAACTGGAGGTCTAAGTGTTTCATTATCTGGTCCAGATGGTAGAGTATTAGGTGGTGGGGTGGCTGGTCTTCTAACGGCAGCGTCTCCTGTACAGGTGGTCGTGGGGAGCTTCGTCACTGATGGGGTGCACAAGGAATTGAGACAAGTAAACCAAATAGAACAGTCCCCTGTTACTGCACCCCATAAACTTGCTCCAATCCGTGCTGGAATGACGGGAGCCAGCAGCCCGCCATCACGTGGGACTCTCAGTGAATCCTCAGGAGGGCCCGGGAGTCCGTTTAATCAGAGTGCTATAGCCTGCAATAATAACACCATATGTTGGAATTTGGGATGGCTTGGAACCTTGGCCTTGTGCCCGCTGGAAACGAAAGACAGACAGACGACACAGATGGTTTCAGTTAGGAATTAG 1137 53.21 MSGSETGVISSGEPFTIGLHKNSVQSQQPVMQGMHLPFGVDGVYKPVAAASPTYQSSGVGVAGNAGADGSAREAFVNMNSQSEPVKRKRGRPRKYGPDGSMAMAPAVRSPAATQSSGGFCPPPTAAPPSGGSATQTSLKKARGRPPGSSSKKQQLDGSGSAGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILTANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSYLLSENGSQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFVTDGVHKELRQVNQIEQSPVTAPHKLAPIRAGMTGASSPPSRGTLSESSGGPGSPFNQSAIACNNNTICWNLGWLGTLALCPLETKDRQTTQMVSVRN 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31643692 31646543 - ClG42_11g0208200.10 Clacu11g2082 262959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g2082 378 ProSiteProfiles PPC domain profile profile. 161 302 IPR005175 -
Clacu11g2082 378 FunFam AT-hook motif nuclear-localized protein 1-like 167 298 - -
Clacu11g2082 378 Pfam Plants and Prokaryotes Conserved (PCC) domain 167 281 IPR005175 -
Clacu11g2082 378 CDD DUF296 166 280 IPR005175 -
Clacu11g2082 378 MobiDBLite consensus disorder prediction 310 333 - -
Clacu11g2082 378 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 53 335 IPR039605 GO:0003680(InterPro)
Clacu11g2082 378 MobiDBLite consensus disorder prediction 317 333 - -
Clacu11g2082 378 MobiDBLite consensus disorder prediction 77 165 - -
Clacu11g2082 378 SUPERFAMILY AF0104/ALDC/Ptd012-like 165 289 - -
Clacu11g2082 378 SMART AT_hook_2 139 151 IPR017956 GO:0003677(InterPro)
Clacu11g2082 378 SMART AT_hook_2 86 98 IPR017956 GO:0003677(InterPro)
Clacu11g2082 378 MobiDBLite consensus disorder prediction 129 160 - -
Clacu11g2082 378 Gene3D - 167 300 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1080 Clacu-Chr8:20814560 Clacu11g2082 Clacu-Chr11:31643692 2.00E-92 dispersed
Clacu10g0173 Clacu-Chr10:2016930 Clacu11g2082 Clacu-Chr11:31643692 1.20E-46 dispersed
Clacu11g0191 Clacu-Chr11:1608732 Clacu11g2082 Clacu-Chr11:31643692 1.40E-49 dispersed
Clacu11g2082 Clacu-Chr11:31643692 Clacu06g0375 Clacu-Chr6:4477924 2.20E-52 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g2082 - - - 0.0