Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g2087 ATGGCTGTGAAACTCAAACAACTGTGTACTGAGGGATTGGGTGTGTGGGCAATGGCGACGATGGCGATGAAGGGCAAAGTTTGTGTTACAGGGGCTGGAGGGTTTATTGGTTCGTGGGTCGTCAAGCTTCTGCTATCCAGGGATTATATTGTTCACGGAACTGTCAGGGAGCCTAGCGATGCTAAGTATGATCACTTGAGAAAACTTGAGAAAGCGACCGAAAATTTGGAACTGTTTAAAGCTGATTTGCTGAACTATGAGTCTCTGCGTTCAGCGATTGCAGGATGTGATGGAGTTTTCCATGTTGCCTGTCCAGTTCCTTCAACAACTTCATCAAACCCCGAGACAGAAGTGATTGAACCTGCTGTAAAGGGCACACATAATGTGCTTGAAGCTTGTGTCGAAGCAAAAATTAAGCGAGTAGTTGTAGTATCCTCAGCCGCTGCAGTGTTTTTCAATCCCAGTTGGCCTCAAGGTCGAGTAATGGATGAAAGTTGTTGGTCCGATATGGAGCACTGCAGAGCTACTAAGAACTGGTATTTTCTGGCAAAAACAAAAGCTGAAAGTGAAGCCTTGGAGTTTGGGAGAAGATGTGGGCTCGACGTTGTGACTATGTGTCCTACTCTCGTTATCGGGCCGGTTTTGCAGGCAACAGTCAACGCCAGCAGCTTGGTCCTTCTCAAAATTCTAAAAGAAGGATGTGAGTCGATGGAAAACAGGCTACGGATGTTAGTAGACGTACGAGATGTAGCAGAGGCGCTAGTTCTTTTATATGAGAAGGGGGAGGCAGAAGGAAGGTATATCTGTACCGCGCATACAATTGAGACAAGGGAGCTGGTGGATGCATTGAAGAGGAAGTACCCTGATTATAGCTATCCAAAGAAGTTGATTGAAGGGAAGGCGGAGTCGGTAAGTCTGAGCTCGGAGAAGCTGCAAAGATTGGGTTGGAAGTATCGGGCGTTAGAGGACACGCTTGTGGATGCTGTCCAGAGTTTCAAAGATGCCGGCATGTTGGAGTGA 1020 47.06 MAVKLKQLCTEGLGVWAMATMAMKGKVCVTGAGGFIGSWVVKLLLSRDYIVHGTVREPSDAKYDHLRKLEKATENLELFKADLLNYESLRSAIAGCDGVFHVACPVPSTTSSNPETEVIEPAVKGTHNVLEACVEAKIKRVVVVSSAAAVFFNPSWPQGRVMDESCWSDMEHCRATKNWYFLAKTKAESEALEFGRRCGLDVVTMCPTLVIGPVLQATVNASSLVLLKILKEGCESMENRLRMLVDVRDVAEALVLLYEKGEAEGRYICTAHTIETRELVDALKRKYPDYSYPKKLIEGKAESVSLSSEKLQRLGWKYRALEDTLVDAVQSFKDAGMLE 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31671316 31674483 + ClG42_11g0208700.10 Clacu11g2087 262964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g2087 339 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 26 330 IPR050425 GO:0016616(PANTHER)
Clacu11g2087 339 Pfam NAD dependent epimerase/dehydratase family 27 263 IPR001509 -
Clacu11g2087 339 Coils Coil 69 89 - -
Clacu11g2087 339 Gene3D - 18 339 - -
Clacu11g2087 339 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 18 333 IPR036291 -
Clacu11g2087 339 FunFam NAD(P)-binding Rossmann-fold superfamily protein 20 339 - -
Clacu11g2087 339 CDD FR_SDR_e 27 316 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g1294 Clacu-Chr10:25869989 Clacu11g2087 Clacu-Chr11:31671316 3.90E-74 dispersed
Clacu10g1295 Clacu-Chr10:25887556 Clacu11g2087 Clacu-Chr11:31671316 6.30E-69 dispersed
Clacu02g1100 Clacu-Chr2:20613695 Clacu11g2087 Clacu-Chr11:31671316 4.60E-59 transposed
Clacu03g0035 Clacu-Chr3:519738 Clacu11g2087 Clacu-Chr11:31671316 2.20E-53 transposed
Clacu09g0332 Clacu-Chr9:2828996 Clacu11g2087 Clacu-Chr11:31671316 2.80E-75 transposed
Clacu10g0611 Clacu-Chr10:8264515 Clacu11g2087 Clacu-Chr11:31671316 5.30E-37 transposed
Clacu10g0753 Clacu-Chr10:10960094 Clacu11g2087 Clacu-Chr11:31671316 2.20E-61 transposed
Clacu11g2087 Clacu-Chr11:31671316 Clacu08g1131 Clacu-Chr8:21307552 1.90E-07 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g2087 - - - 0.0