Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Clacu11g2091	ATGGCTGAACACTTGGCCTCAATATTTGGCACCGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCCTGCCGTCACGGAGATCGCTGCTCTCGCCTTCACAACCGCCCTACTATTTCCCCCACTCTTCTCTTATCCAACATGTACCAGCGCCCCGACATGATCACCCCCGGGGTTGATGCTCAGGGCCAGCCCATAGATCCCCGAAAGATTCAGGAACACTTCGAGGATTTCTATGAAGACATTTACGAGGAACTTGGTAAGTTCGGTGAGATCGAGAGCCTTAATGTCTGTGATAATCTCGCAGACCACATGATTGGCAATGTCTACGTTCAGTTTAGGGAGGAGGACCAGGCTGCTGCCGCACTCCAAGCGTTGCAAGGACGGTTCTACTCTGGTCGACCCATTATCGCAGATTTTTCTCCTGTGACTGATTTCCGCGAAGCAACGTGCCGCCAGTACGAGGAGAATAATTGTAATCGAGGGGGATATTGCAATTTTATGCACGTAAAGATGATTGGGAAGGATTTGAGGAGGAAGCTGTTCGGTAGGTACCGGGGATATAGGCGGAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAAAGAGTACGATAGGCGTGAGAGGGATTACAGGGATCGTGACTATCGGGGAAACGGACGGAGCAGGGAGCGTCAGGATAGGGATGGGGGAAGGAGAAGGCATGGTAGCCCAAGACGAAGCAGAAGCCCTGTCACTGCGAGAGAAGGTAGCGAAGAGCGGCGTGCCCGTATTGAACAGTGGAACCGAGAAAGGGAGGAGAAGCAGTGA	825	52.97	MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRSLSPRNRKEYDRRERDYRDRDYRGNGRSRERQDRDGGRRRHGSPRRSRSPVTAREGSEERRARIEQWNREREEKQ	274

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
11	31695938	31696762	-	ClG42_11g0209100.10	Clacu11g2091	262968

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Clacu11g2091	274	Pfam	RNA recognition motif	83	139	IPR000504	GO:0003723(InterPro)
Clacu11g2091	274	PRINTS	U2 auxiliary factor small subunit signature	18	37	IPR009145	GO:0000398(InterPro)\|GO:0003723(InterPro)\|GO:0089701(InterPro)
Clacu11g2091	274	PRINTS	U2 auxiliary factor small subunit signature	165	177	IPR009145	GO:0000398(InterPro)\|GO:0003723(InterPro)\|GO:0089701(InterPro)
Clacu11g2091	274	PRINTS	U2 auxiliary factor small subunit signature	103	125	IPR009145	GO:0000398(InterPro)\|GO:0003723(InterPro)\|GO:0089701(InterPro)
Clacu11g2091	274	PRINTS	U2 auxiliary factor small subunit signature	37	57	IPR009145	GO:0000398(InterPro)\|GO:0003723(InterPro)\|GO:0089701(InterPro)
Clacu11g2091	274	PRINTS	U2 auxiliary factor small subunit signature	75	90	IPR009145	GO:0000398(InterPro)\|GO:0003723(InterPro)\|GO:0089701(InterPro)
Clacu11g2091	274	PRINTS	U2 auxiliary factor small subunit signature	130	154	IPR009145	GO:0000398(InterPro)\|GO:0003723(InterPro)\|GO:0089701(InterPro)
Clacu11g2091	274	ProSiteProfiles	Zinc finger C3H1-type profile.	148	175	IPR000571	GO:0046872(InterPro)
Clacu11g2091	274	MobiDBLite	consensus disorder prediction	250	274	-	-
Clacu11g2091	274	SUPERFAMILY	RNA-binding domain, RBD	77	149	IPR035979	GO:0003676(InterPro)
Clacu11g2091	274	Gene3D	-	43	145	IPR012677	-
Clacu11g2091	274	MobiDBLite	consensus disorder prediction	194	274	-	-
Clacu11g2091	274	FunFam	Splicing factor U2AF small subunit	45	145	-	-
Clacu11g2091	274	MobiDBLite	consensus disorder prediction	201	239	-	-
Clacu11g2091	274	CDD	RRM_U2AF35B	44	145	-	-
Clacu11g2091	274	ProSiteProfiles	Zinc finger C3H1-type profile.	12	40	IPR000571	GO:0046872(InterPro)
Clacu11g2091	274	Pfam	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	14	38	IPR000571	GO:0046872(InterPro)
Clacu11g2091	274	Pfam	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	150	173	IPR000571	GO:0046872(InterPro)
Clacu11g2091	274	PANTHER	U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT	1	258	IPR009145	GO:0000398(PANTHER)\|GO:0000398(InterPro)\|GO:0003723(InterPro)\|GO:0005681(PANTHER)\|GO:0030628(PANTHER)\|GO:0089701(PANTHER)\|GO:0089701(InterPro)
Clacu11g2091	274	SMART	c3hfinal6	148	174	IPR000571	GO:0046872(InterPro)
Clacu11g2091	274	SMART	c3hfinal6	13	39	IPR000571	GO:0046872(InterPro)
Clacu11g2091	274	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	44	146	IPR000504	GO:0003723(InterPro)
Clacu11g2091	274	SMART	rrm2_1	73	142	IPR003954	GO:0003676(InterPro)

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Clacu11g2091	K12836	-	-	csv:101208972	452.981

Dupl-types

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Clacu01g1331	Clacu-Chr1:24313174	Clacu11g2091	Clacu-Chr11:31695938	4.30E-104	dispersed
	Clacu10g0726	Clacu-Chr10:10363079	Clacu11g2091	Clacu-Chr11:31695938	7.00E-30	dispersed

Deco-Alignment

Select	Vvi1	Blo1	Blo2	Bda1	Bda2	Bpe1	Bpe2	Bma1	Bma2	Cmo1	Cmo2	Cma1	Cma2	Car1	Car2	Sed1	Cpe1	Cpe2	Bhi1	Tan1	Cmetu1	Lac1	Hepe1	Mch1	Lcy1	Cla1	Cam1	Cec1	Cco1	Clacu1	Cmu1	Cre1	Cone1	Cone2	Cone3	Cone4	Lsi1	Csa1	Chy1	Cme1	Blo3	Blo4	Bda3	Bda4	Bpe3	Bpe4	Bma3	Bma4	Sed2	Cmo3	Cmo4	Cma3	Cma4	Car3	Car4	Cpe3	Cpe4	Bhi2	Tan2	Cmetu2	Lac2	Hepe2	Mch2	Lcy2	Cla2	Cam2	Cec2	Cco2	Clacu2	Cmu2	Cre2	Lsi2	Csa2	Chy2	Cme2
	Vvi18g31	.	.	.	Bda03g00337	.	Bpe04g00296	Bma04g00306	.	.	.	Cma01g02046	Cma09g00013	Car01g01612	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Lsi04g02431	Csa04g02745	.	.	Blo17g00911	.	.	.	.	.	.	.	.	Cmo01g02103	.	.	.	.	Car09g00013	.	Cpe02g00010	.	.	.	.	.	.	.	Cla11g01859	Cam11g1926	Cec11g1953	Cco11g1965	Clacu11g2091	Cmu11g1894	Cre11g2302	.	.	Chy07g00433	Cme07g00017

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0000890	2	7	1	3	3	1	5	1	1	2	3	2	5	3	3	2	1	3	4	1	3	1	2	3	4	3	2	6	5	1	83