Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g2093 ATGCGTTTTCGCTCAGTGATCACTCCATTATCAGGGATGGCAATGGCGCTAGTTCAGCCACACACTTCAGCTTCTGCAATTTCGTCTTCCTCCGCCTCATTCTACAGAAGTTCTTTTCAGCAACTCCGTTCGCGGACCACGACCCTTGATCTTCGGAACAGCCACTCCATCCCTCATCGTTCCACTTGCAGAGCTTCCTGGCAGGAGCTTGCAGGGGTTCTGATATTCTCTGCAATTCCTTTCACGGCGGTGAAAGCCATCGCCAATAGTCCACTTGGAGAGTCGCTCCAGAGACAATTGGAAAAGAAGAAAAAAGCTGCCGTAGCCAACTCTTCGAAGTTCAAGGCTCTTGCTGAGGAGGCTAGAAAAGATAGCTCATGGTATGGAGAAGGGCGTCCTCGGTGGCTTGGTCCACTACCATATGATTATCCAAAATATCTGACAGGTGAAATGCCTGGTGATTATGGATTTGATATTGCAGGTTTGAGTGAGGATCCTGTGGCTTTTCAGAAGTACTTCAACTTTGAAATACTGCATGCTCGTTGGGCTATGTTAGCATCCCTTGGAGCTTTAGTTCCAGAAATCTTAGATATTTTTGGAGCTTTTCATTTTACTGAACCCATCTGGTGGCGAGTGGGCTATTCAAAACTTAAGGGAGATACACTCGACTATCTTGGAATACCAGGGCTTCATTTAGCTGGAAGCCAAGGAGTGATTGTCATTGCAATTTGCCAAGCTATTTTGATGGTTGGACCCGAATATGCAAGATATTGTGGCATTGAGGCATTGGAGCCTCTGGGAATATATCTGCCGGGGGATATAAATTATCCAGGTGGTGTGTTGTTTGACCCCTTGAATCTGTCCAAGGATGCTGCAGCCTTTGAGGAACTAAAAGTAAAAGAGATTAAAAATGGGCGTTTAGCCATGGTTGCCTGGCTAGGATTTTACAGTCAAGCTGCTTTGACGGGTGAAGGCATAGGGCAGGATGCAATTTTTAGGGTGCTGGACCTTCTGGTGAACGTGAGGCGAGCCTATTCGAGAATGATTTGTTGGGTTGCAATGGAGCCAGGTGTAGGTCTACTGTTCTCAAGATCTGCATCTGCGAATCTCCCACATTCATGTCTCCTACTCGATGATCTTCTCTACTCGATCTGCCAAATTCAACTCACTCCTCCACTTCTGCTTCAGGTAACTCTCTCTCCTTCAGCAATCTCCCTCTGTGATTGCCTTTGGGAGTGTTTGCTTCTTTCATCCGAAATGATGGCTGACATGGATGTGCTCGCTGACACATCTGAGGTTAACGAGAAGTGTGCCTTGGATATGAGTACCTACGAGAATTTGCCTAAAGGTTGCAATGCAGCATCTCTTCACTGTGCTACTCCCATTCCTAAGGATGATACCGACGGTTCTTACGTTTTCGTTAGCTCCACCGATGCTGCTACTTCCGATGATCACGTTGCTTCGGATCTTAATGGGCAAGCAGAGTGTTCTCAGAATGTTGATACGGAGATCATGGTTCGTAATCGGGAATTGAATACTGACGTCGGTAGGAAACCTGAATCAATTATCGTTTCCGATGCATTGGAGGATTCCCAATTCGAATTTTCTGAGCATGTGAAAGAGAATGACGCAATTCAGGATGAGATCAGAGTGGCGGATGTCCTTCAATCTTCCGACGCCAAGGTGGATGAAGCGGAACCTGGACTGGATTCTTCTCAGACGGTGGAAGAAACTCGAATCCTAGAGGACCAGACTATCAACGTATCTTTTGATGCAGAGACAAATTCTGGCGAAATCCATGGGGTACAGTCTCCTCAAGCAGTTGAAGACAATCAGATTCAGGAGGAAAATCAAAGAATTTCTACCTCTGGATCTTCTAACACCGATGCAAATCGTTGTGGAGAAATCGAGGTGGAGTCTTCCCAAATGGCGGAAGATATTAACAGTCATGAGGATAACGGAATTGTGAAAATCATGAAGTCTTTTGATACCGAAACAAATCATGTGATAAACATCGAGGCGGAGTCTTCTCCGAAGGCAGACGGCATCGAGATTCACAAAGAAAATGGAACGGTTGCAATCAAGTTTTCTGATTTTGACTCAAACCCTGGGGAAGAAATTGAGGTGGAGTCTTCTCAGAAGGCAGACGACATTCAGAATCACGAGGAAAATGGCATAATGAAATCCTCTTCTGATACCGAGGCAAACCCTAGGTCAGAAATTGAGGTGGAGTCTTCACGGGAGGTTGAAGACATTGAGATTCAGGAGCAAGATGAAGTAGTGGATGCCATCAAATCTTCTGCTACAGTGGAAAAGCGTGGGCAAGAAGGAGAAGTAATCCCCGAGTATAATGACACAGTGGCTATCAATGAATTGTCTGATACCATACATAACAGCAGTAAAGAAACTGAGATGGAATCTTTCGAGAGAGAGGAAGGCATTCGAGAGTCAGAAGATGCAAATTTGGAGGCTGCTGACTGCCATTATGTTAATGGCAAAGAGAAGGTTGATGAGATGGTAAATAAAGCTGTGATAAGCGACCCTGTGGGAGGAATAGGAGAATCTCAAATTATAAGTATGGGTGCTGCTGAATCTGACCTAGATGATTCTGATGATACCGTGGAAGATGTTAAGAGGGAATGTACATCAGGGGTTGCCTTGAATGAGGAGAACTCTAAGAAAACTCAATTAACAATTAGTCAGGATGGTGAACATTACCAGGTTGTTGGCGAGGAACAAGAAAATTTAAACAATGAAGTTTCTCTTTTAGAGCCATCAGAAGAAAACAAAGTGGACATGGAGCAGCATTTGGCAGCAGCTCCTAGTCCACTGGTCAGTTCAGAAGACATAAATGGTTCTATCTCCATTAGCACGGAAGATGGCTTGCCAACTAGTATGGATCAAGATGCCCCCTTGGGAACTATTGATGACAAAGACACTGTAGCTAACAGGACCAACTTCCATGACCATTCTGAATCCTCATCTGGCTCTGTAGATTGTGATGTCGCTACTGTTGAAACTCATCAATTATCTCCTGAGATGCTTATTAGTGATCCAATAGAGTTAAATGAGATTTCTGTGAATGATGAACAAGAGGTGAATCATGTGTTGGAACTAGAAGAGAATTCAGAAATGGCATCTCATCCTAAAATAGATGAATGTGTCAAGGTTGAAGTTTTGGAAGGTACGGTCTCTGGAAATGGAGATGAGGTGCCCACTGCATTCGACGAATCTAGAATTTCTTGTGGTGATGACTTTGTTGCTGGCAGTCAATTAATCGCCGGGGGCACTGAACCAGTGGAAAGCATTGACACGGTATCTGCTGTTGTGATAGGAAATACTTCAATTGAAATAAGGGAACTGGGCTCTACGAATTGTCCTAATGATCCAGTAGTGAGATCCAATCTTGATGTTGAGGATTGTAAAGTGTCTGAAATTGTGGCTTCTGTGGGTGATGTTGTCCGAGCGGATAAAGAAGTCAGGGCAAATCATGAGGTTGATTTTCTTGGTAACTCTAATTTTGAAACCAAGTGTGAGAATGGTCGCGTCGAAAAAGATCACCAAGGAACTTTCCATAGTAATGATTTTACGTCAATTGAATATCAAGAAAGAGGTTCCACTGTTCCTGAAATTCCTAATGGTGTCAATAAATCTTCTGCAATTCAACTAAGTTCTGCTGTTGCAACAGACTCGGAATTGCATGATAATGGAAGTTGCTCAATTCCTATTGCTAATAAGAAATCAGGAGACGACATCAAGATTCCATCCTCCAAAGGAGGTGGTAGCAGAAATATATCTGGCGATGATGTCAGTGTGTCAAAAACTGATGTTGTTCTCAAGGGTTCTATAGTAAACGATGAAGGGAATCTGAACTCAACGTCTGATGTTGTCTCTGAAACTGATGATAAGCCGGCAACAGAAGAAACTCAGGTCATTCATGAGGGTTGCCAGAATGAACCTTCACCTATTTCTCCAGAAGGTTCTGGTGACACTATAACGGGGCAAAATGTAGGGGTTGAGGCAGGAACAAGGCCGTTTAACTTTTTGGTTAAGGTACCTAGATTCGATGACAAAAATATAAGAGAGCAGATTAAGTGTGCTCAGACAGAAGTTGATTGGAAGACAAAGGATCGAGATGCCATTCGGGTTCAAATACAGACAATGAGGGCTGCATGGAAAGTGTTGAGTGATAATCTTGAAGCAGCCGTGTCGGAAGGAAGAGCTGCAAGAGACTTGCTCAAGTCAAAAAGACTGGAGATAGACTCTGTTCAATCAGTGATAACAAAAGTGAAGAATGCCATGTCTGTTGAGGATATTGATGGCAGGATACGCAACATTGAACATATGATAGAGCATGAAACACTGCCATTAAAAGAAGAAAAACAATTAATTCGTGAAATCAAGCAATTGAAGCAGCTGCGGGAACAGCTTTCATCAACTATGGGTAAGCAGGATGAGCTTCAACAGGCATTGGACCAGAAAGACCAGATTGAAGAGCGCCTTAAGCTATTAAGAAAGGAGATGGATTTACTGAGAGACAATGTTGTGAAAGCTGAATCAGTTATAAAGGCTGCCAAGAAGAAATATAATGATGAAAGCATTAAGCTGGATGAATTGCAATCCCAGTTTAAAGCAGCAGATAAGATTCGCCAAGAAGCATATGCTAATTTACAGAGTATGAGGAAGCAATTATATGAGAAGAACAAATACTGCTGGAAGTATCGGGATGACGCAAAGGAAGCCAATGAAATAGCGTCAAGTCGAGATCTAGAGAGACTGCAACATTTTTGTGTTAATCAGGTGGAGCGCATGATGGAACTGTGGAACACAAATGCTGAGTTCAGGGAAGAATATATTAAGAGCAACATGAGGAGTACCCTGAGGCGACTAAAGACATTGGATGGCCGCTCCCTTGGCCCTAATGAAGAGCCGCATGTACTGAATCTCGTTGTTAAGGAGGGACCAGCGAGGGACAATTCTCTTTCAACGGTTTCAACAACGCAGGAATCTGAAAAACTGATACCCGCTGATGATGCGAGAGATAATGACAAACCAGGGACCAAAGTAGCTGAAACGAAGAATCAAATGACAAAAAGGAAGAAGCCTGAAACAGTTATGGCTTTAGTGAATGACCCTAGGAATATCTCTAGCGAGAACGAGGTAGAAGAGCCACCACGACCGGAGGAGATTAAGCGAACAAGAGAGGAAGAGGAGCTGGCGGCAAAAGCAGAAGAGTTGAGAAAGGAAGAGGAAGCAAGGAAGTTGAAGGAGCAACGGAAGTTGGAAGAGAAGGCCAAAGCCAAAGAGGCGTTGGAGAGGAAAAAAAGAAATGCTGAGAAAGCCCAGGCCAGGGCAGTAATCAAAGCACGAAAAGAGGCAGAAGAGAGGGAGAAGCTAAGGGAGAAGAGAGCAAAAAAGAAGGAAAGGAAGATGGCAGCTGAGACGGAAGCTGGAAATGGTTGGGATGAAAGGGAAGCTGCTTTAGTCACCGAAAAGCCTTCAGAAGCTCCGAAGGAGGAGTCTGAAAACACAGGTAAACAGGGGATGGCACTGGCAGCGAAGAGGCCTCTAAAAGCGTCGCAGTACACAAAGCAGAGCAAGACAAAGTCAATTCCTCCGCCACTTCGAAATCGTGGTAAGAGGAGGATGCAACCATGGATGTGGGTTCTTCTGACAACCGTGGTTGTTTTTGCGCTGTTCTTCGTTGGACAACAACGGCTGCTCTACTAG 5730 44.15 MRFRSVITPLSGMAMALVQPHTSASAISSSSASFYRSSFQQLRSRTTTLDLRNSHSIPHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQLEKKKKAAVANSSKFKALAEEARKDSSWYGEGRPRWLGPLPYDYPKYLTGEMPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGEGIGQDAIFRVLDLLVNVRRAYSRMICWVAMEPGVGLLFSRSASANLPHSCLLLDDLLYSICQIQLTPPLLLQVTLSPSAISLCDCLWECLLLSSEMMADMDVLADTSEVNEKCALDMSTYENLPKGCNAASLHCATPIPKDDTDGSYVFVSSTDAATSDDHVASDLNGQAECSQNVDTEIMVRNRELNTDVGRKPESIIVSDALEDSQFEFSEHVKENDAIQDEIRVADVLQSSDAKVDEAEPGLDSSQTVEETRILEDQTINVSFDAETNSGEIHGVQSPQAVEDNQIQEENQRISTSGSSNTDANRCGEIEVESSQMAEDINSHEDNGIVKIMKSFDTETNHVINIEAESSPKADGIEIHKENGTVAIKFSDFDSNPGEEIEVESSQKADDIQNHEENGIMKSSSDTEANPRSEIEVESSREVEDIEIQEQDEVVDAIKSSATVEKRGQEGEVIPEYNDTVAINELSDTIHNSSKETEMESFEREEGIRESEDANLEAADCHYVNGKEKVDEMVNKAVISDPVGGIGESQIISMGAAESDLDDSDDTVEDVKRECTSGVALNEENSKKTQLTISQDGEHYQVVGEEQENLNNEVSLLEPSEENKVDMEQHLAAAPSPLVSSEDINGSISISTEDGLPTSMDQDAPLGTIDDKDTVANRTNFHDHSESSSGSVDCDVATVETHQLSPEMLISDPIELNEISVNDEQEVNHVLELEENSEMASHPKIDECVKVEVLEGTVSGNGDEVPTAFDESRISCGDDFVAGSQLIAGGTEPVESIDTVSAVVIGNTSIEIRELGSTNCPNDPVVRSNLDVEDCKVSEIVASVGDVVRADKEVRANHEVDFLGNSNFETKCENGRVEKDHQGTFHSNDFTSIEYQERGSTVPEIPNGVNKSSAIQLSSAVATDSELHDNGSCSIPIANKKSGDDIKIPSSKGGGSRNISGDDVSVSKTDVVLKGSIVNDEGNLNSTSDVVSETDDKPATEETQVIHEGCQNEPSPISPEGSGDTITGQNVGVEAGTRPFNFLVKVPRFDDKNIREQIKCAQTEVDWKTKDRDAIRVQIQTMRAAWKVLSDNLEAAVSEGRAARDLLKSKRLEIDSVQSVITKVKNAMSVEDIDGRIRNIEHMIEHETLPLKEEKQLIREIKQLKQLREQLSSTMGKQDELQQALDQKDQIEERLKLLRKEMDLLRDNVVKAESVIKAAKKKYNDESIKLDELQSQFKAADKIRQEAYANLQSMRKQLYEKNKYCWKYRDDAKEANEIASSRDLERLQHFCVNQVERMMELWNTNAEFREEYIKSNMRSTLRRLKTLDGRSLGPNEEPHVLNLVVKEGPARDNSLSTVSTTQESEKLIPADDARDNDKPGTKVAETKNQMTKRKKPETVMALVNDPRNISSENEVEEPPRPEEIKRTREEEELAAKAEELRKEEEARKLKEQRKLEEKAKAKEALERKKRNAEKAQARAVIKARKEAEEREKLREKRAKKKERKMAAETEAGNGWDEREAALVTEKPSEAPKEESENTGKQGMALAAKRPLKASQYTKQSKTKSIPPPLRNRGKRRMQPWMWVLLTTVVVFALFFVGQQRLLY 1909
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31705853 31726004 + ClG42_11g0209300.10 Clacu11g2093 262970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g2093 1909 MobiDBLite consensus disorder prediction 724 748 - -
Clacu11g2093 1909 MobiDBLite consensus disorder prediction 1656 1879 - -
Clacu11g2093 1909 Gene3D Chlorophyll a/b binding protein domain 134 336 - -
Clacu11g2093 1909 MobiDBLite consensus disorder prediction 601 631 - -
Clacu11g2093 1909 FunFam Chlorophyll a-b binding protein, chloroplastic 134 342 - -
Clacu11g2093 1909 Pfam Chlorophyll A-B binding protein 144 319 IPR022796 -
Clacu11g2093 1909 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 1233 1901 - -
Clacu11g2093 1909 Coils Coil 1460 1542 - -
Clacu11g2093 1909 MobiDBLite consensus disorder prediction 1658 1672 - -
Clacu11g2093 1909 MobiDBLite consensus disorder prediction 1232 1268 - -
Clacu11g2093 1909 MobiDBLite consensus disorder prediction 1673 1706 - -
Clacu11g2093 1909 MobiDBLite consensus disorder prediction 1716 1842 - -
Clacu11g2093 1909 Coils Coil 1732 1816 - -
Clacu11g2093 1909 SUPERFAMILY Chlorophyll a-b binding protein 126 331 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0205 Clacu-Chr6:2283845 Clacu11g2093 Clacu-Chr11:31705853 1.20E-07 dispersed
Clacu10g1178 Clacu-Chr10:24465764 Clacu11g2093 Clacu-Chr11:31705853 2.40E-42 dispersed
Clacu11g1553 Clacu-Chr11:26628799 Clacu11g2093 Clacu-Chr11:31705853 3.30E-23 dispersed
Clacu11g1987 Clacu-Chr11:30840200 Clacu11g2093 Clacu-Chr11:31705853 3.10E-25 dispersed
Clacu11g2093 Clacu-Chr11:31705853 Clacu02g1889 Clacu-Chr2:32393600 1.50E-45 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g2093 - - - 0.0