Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g2096 ATGCTCCATCTTCTTCTTCTGCCATTCATTCTTTTAGCATCTTCTTCTGCGGCCGTTAACACCAAGCCCGGATGCCCTTCCAACTGTGGAAACGTCTCCGTTCCCTATCCTTTCGGCATCGGCGTTGGTTGTTACATGGCCACCGGGTTTGACATAACTTGCAATTCTTCGTATGATCCTCCATTACCTTTTCTAGGTACTGGTAACCTTCAAGTTGTGGAAATTTCTCTAACTAATCTCCGCATACGCAACTTTGTTTCTTTCAATTGCTACACCCAAACTGGTGCTCTCGCCCAGAGATCCAGCTCCTGGATCAACTTGGGCCGCCTCCCTATGTTCTTCTCCACCACCAACAAGTTCACCGTCATCGGCTGCGACACCCTGGCTTTGATCAGTGGCTCCGAGGGGCTCTCCTACACCAGTGGATGCGTCTCCATCTGCTCCAGCAAGGAAAGCGTGATCAATGGCTCTTGTTCTGGCATCGGGTGTTGCCAGACTGCCGTCCCCAGAGGCCTAAAGCGCTTCCAGAGCATGATTGGGAACCTCAACAACCACACCAAAACCTGGCAGTACAATCCTTGCAGTTACGCCTTCCTGGTTGACCAAGATCGCTACAACTTCGAGGTGTCTGATCTGGCGGATCCCAACTTTCTAGCCACCATTCAAAGCTTGCCAGTGGTTTTGGATTGGGTGGCGGGTAACCTGACATGTGAAGAGGCTCGGAAAGGCTTCTCAACCTACGTTTGTCAAGCCAATTCCGAATGCTATGATTCAGAGAGTGGAAGCGGTTATCAATGTGGTTGCAGCCCAGGTTTCAGTGGGAACCCGTATCTCACTTCTGGATGCCAAGACATTGACGAGTGTGCAGGCCCCAGCAACCCTTGCGAGGGCATATGCGTGAATACCCCTGGCAGTTATTACTGCTCATGTCCCCACGGTTCTTATGGTGATGGTAAGAAGGACGGCAAGGGCTGCATTACCAAAACCAAGCAATTTCCACTTATTCAACTCTCTCTTGGTCTTGGCTCCACTCTTCTCTTCCTTATCGTCACAGCCACTTGGCTTTACTTCACCATCAAGAAGAGGAATCTCATTAAACTTAGAGAGAAATTCTTCCAACAAAACGGAGGATTCTTATTGCGCCAGCAGTTATCCCAACACCAAGCTGCCTTTGACTCCACAAAAATCTTCACGGCAGAGGAGCTGGAGAAAGCGACCGACAATTATGCTGAGACCCGAATTTTGGGCAAAGGCGGAAACGGGACTGTGTACAAAGGAATTCTGCCAGACGGCAAAATAGTGGCCATTAAGAAGTCCAAGATAGCAGATGAAAGCCAAATTGAACAATTCATCAATGAAGTCATAATTCTGGTCCAAATCAACCACAGAAATGTGGTGAAGCTCTTGGGATGCTGCCTAGAGACGGAGGTTCCTCTGCTCGTCTACGAATTCGTGTCCAATGGGACTCTACATGCCCATATTCATGACAACAACAGCTTTAATAGTAATTCTCTGTCTTGGGAAAACCGGTTGAGAATAGCGACGGAAACGGCTGCAGCTCTTTCTTACCTGCACTCTGCAGCGTCCACACCCATCATTCACAGAGACGTGAAGTCAGCGAACATATTGTTGGACAACAAATGCACTGCAAAAGTAGCCGATTTTGGAGCATCCAAGTTTATCCCAATGGATCAGTCGCAGATCACGACGTTGGTTCAAGGGACGTTTGGTTACTTAGACCCGGAGTATTTCCAAACGAGTCAATTGACGGAGAAGAGCGACGTGTACAGCTTTGGGGTGGTACTGTTAGAGTTGTTGACGGGAGAGTTGCCAGTGTCGTTCGAGAGATCGGAATCCCAGAGAAACCTGTCGTCGTATTTTGTAGCATCGTTGCGTGAGAAGAGGTTGTTTAGGATACTGGAGGGGAGAGTGCTGAGGGAGGGAAAGAGAGAGCAACTGATAGCAGCAGCGGAGCTAGCCAGGAGATGCTTGAAGCTGAAGGGGGAAGACAGGCCCAGAATGAGAGAAGTGGTGTCGGAGTTAGAAAGGTTGAGAAGGGAAGGTGAAGGTGAAGGTGAAGGTGTAAATGAGGAAGAGACACAAACTTTGTTGGAACCACAACAACAACATGCCTTAAACTCACTGGATTTGTACCCCATTTCCACTTCTACTTTTCAAGCCGCCCATGTCTACAATTACGAAGCATTCGTATCCGAGTCTAGTTCTTCCCAATACCAATACGACGTCGGATCCTCCTCCTCCACATCCCATCTCGTCCATTCATTCCACCTCTCGCGATGA 2301 48.8 MLHLLLLPFILLASSSAAVNTKPGCPSNCGNVSVPYPFGIGVGCYMATGFDITCNSSYDPPLPFLGTGNLQVVEISLTNLRIRNFVSFNCYTQTGALAQRSSSWINLGRLPMFFSTTNKFTVIGCDTLALISGSEGLSYTSGCVSICSSKESVINGSCSGIGCCQTAVPRGLKRFQSMIGNLNNHTKTWQYNPCSYAFLVDQDRYNFEVSDLADPNFLATIQSLPVVLDWVAGNLTCEEARKGFSTYVCQANSECYDSESGSGYQCGCSPGFSGNPYLTSGCQDIDECAGPSNPCEGICVNTPGSYYCSCPHGSYGDGKKDGKGCITKTKQFPLIQLSLGLGSTLLFLIVTATWLYFTIKKRNLIKLREKFFQQNGGFLLRQQLSQHQAAFDSTKIFTAEELEKATDNYAETRILGKGGNGTVYKGILPDGKIVAIKKSKIADESQIEQFINEVIILVQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLHAHIHDNNSFNSNSLSWENRLRIATETAAALSYLHSAASTPIIHRDVKSANILLDNKCTAKVADFGASKFIPMDQSQITTLVQGTFGYLDPEYFQTSQLTEKSDVYSFGVVLLELLTGELPVSFERSESQRNLSSYFVASLREKRLFRILEGRVLREGKREQLIAAAELARRCLKLKGEDRPRMREVVSELERLRREGEGEGEGVNEEETQTLLEPQQQHALNSLDLYPISTSTFQAAHVYNYEAFVSESSSSQYQYDVGSSSSTSHLVHSFHLSR 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31737545 31739997 + ClG42_11g0209600.10 Clacu11g2096 262973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g2096 766 ProSitePatterns Calcium-binding EGF-like domain signature. 284 308 IPR018097 GO:0005509(InterPro)
Clacu11g2096 766 ProSitePatterns Protein kinases ATP-binding region signature. 415 438 IPR017441 GO:0005524(InterPro)
Clacu11g2096 766 Gene3D Laminin 235 286 - -
Clacu11g2096 766 Pfam Wall-associated receptor kinase galacturonan-binding 25 82 IPR025287 GO:0030247(InterPro)
Clacu11g2096 766 SMART egfca_6 284 326 IPR001881 GO:0005509(InterPro)
Clacu11g2096 766 SMART egf_5 287 326 IPR000742 -
Clacu11g2096 766 SMART egf_5 236 283 IPR000742 -
Clacu11g2096 766 Pfam Wall-associated kinase 156 231 IPR013695 GO:0004674(InterPro)|GO:0016020(InterPro)
Clacu11g2096 766 Gene3D Transferase(Phosphotransferase) domain 1 485 707 - -
Clacu11g2096 766 FunFam Fibrillin 2 283 321 - -
Clacu11g2096 766 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 299 310 IPR000152 -
Clacu11g2096 766 FunFam Wall-associated receptor kinase 2 235 282 - -
Clacu11g2096 766 ProSiteProfiles EGF-like domain profile. 284 317 IPR000742 -
Clacu11g2096 766 Pfam Protein kinase domain 409 679 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g2096 766 CDD STKc_IRAK 415 678 - -
Clacu11g2096 766 FunFam Wall-associated receptor kinase 2 485 703 - -
Clacu11g2096 766 ProSiteProfiles Protein kinase domain profile. 409 684 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g2096 766 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 21 699 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Clacu11g2096 766 SUPERFAMILY EGF/Laminin 282 326 - -
Clacu11g2096 766 Pfam Calcium-binding EGF domain 284 325 IPR049883 -
Clacu11g2096 766 ProSitePatterns Serine/Threonine protein kinases active-site signature. 532 544 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu11g2096 766 Gene3D Phosphorylase Kinase; domain 1 383 484 - -
Clacu11g2096 766 CDD EGF_CA 284 317 - -
Clacu11g2096 766 FunFam Wall-associated receptor kinase 2 379 484 - -
Clacu11g2096 766 SUPERFAMILY Protein kinase-like (PK-like) 388 682 IPR011009 -
Clacu11g2096 766 SMART serkin_6 409 684 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu11g2096 766 Gene3D Laminin 287 327 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0768 Clacu-Chr8:17706675 Clacu11g2096 Clacu-Chr11:31737545 1.00E-186 dispersed
Clacu08g0769 Clacu-Chr8:17713962 Clacu11g2096 Clacu-Chr11:31737545 3.20E-154 dispersed
Clacu08g0770 Clacu-Chr8:17735191 Clacu11g2096 Clacu-Chr11:31737545 2.70E-54 dispersed
Clacu10g1935 Clacu-Chr10:32948844 Clacu11g2096 Clacu-Chr11:31737545 2.30E-78 dispersed
Clacu11g1083 Clacu-Chr11:13526810 Clacu11g2096 Clacu-Chr11:31737545 2.20E-62 dispersed
Clacu11g2096 Clacu-Chr11:31737545 Clacu09g0229 Clacu-Chr9:2110013 7.00E-58 dispersed
Clacu03g1096 Clacu-Chr3:20340308 Clacu11g2096 Clacu-Chr11:31737545 1.30E-89 transposed
Clacu11g1106 Clacu-Chr11:14104833 Clacu11g2096 Clacu-Chr11:31737545 2.00E-117 transposed
Clacu11g1107 Clacu-Chr11:14132969 Clacu11g2096 Clacu-Chr11:31737545 1.20E-55 transposed
Clacu11g2096 Clacu-Chr11:31737545 Clacu08g1155 Clacu-Chr8:21603546 1.10E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74000 PF00069 Pkinase 1.70E-49 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g2096 - - - 0.0