Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g2100 ATGATGCACATTAGTTTACATGAACTGGAAGAGGTTGCGGTAGAAAAAGAACACGAAGGAGAATCGGAGACCCCTCGTGTTACAGCAAGACAATTGCAAGAAGCAGTTGATGCTCATCCAGATGACCCCTCATCCCATTTCAAACTCGGGATTTTCATGTGGGAAAATGGAGGAAGTCACGATAAGGCGGCTGCCGCGGACCATTTTCTCAAATCAGCGAAACTAGACCCTGGAAATGCTGCCGCTTTCAAATATCTTGGGCATTATTACGCCACATTTTCTGTCGACATCGAAAGGGCTCTCAAGTGCTACCAGAGAGCTGTCAGTCTCGATGTCGACGATTTCCACTCTGGAGAAGCCTTGTGCGATCTGTTGCATCACCAAGGAAAGGAGAGTTTAGAGGTTGCTGTATGCAGAGAGGCTTCCTCTAAGTCACCCAGGGCCTTCTGGGCTTTCCGGAGGTTGGGCTATTTGCAGGTTTATCAAAAGAAATGGACTGAAGCTGTCTTAAGTCTTCAGCATGCCATTCGAGGATATCCTCATTGTGCTGATTTGTGGGAAGCCCTGGGTCTTGCATATCAACGACTTGGTAGGTTTACTGCTGCAATTAAGTCTTATGCACGGGCCATTGAAATTGAAGGAGATAGAATTCTCGCTTGGGTTGAGAGTGGAAACATCTTCTTGATGCTTGGTTTATTAAAAAAAGGAGTTGAACACTTTCGGCAAGCTCTAGAGATATCACCTAAAAGTATTACTGCACAATTTGGGCTCTCTTCAGGGCTTCTTGGTTTGGCAAAGGAATACATTAATAGGGGGGCATTTAAGTGGGCATCCTTCCTATTAGAGGAAGCATCTAAAGTTGCAAGAGGAAGTACTCATTTAGCTGCAAACTCATCGTGTATCTGGAAGTTGCTTGGAGATATTCAGCACACATATGCAAAATGTTATCCATGGATGGAAGAGGACTGGGGACAATGCTCAGAATCCTTTAGAACTTCTATCCTTTCCTGGAAGCAGACCCGCAGTTTGGCTTTATTTTCTGCCAAATGTTCCTATCAGCAAGCCCTGCACTTGGCTCCGTGGGAAGCTAACATTTACACAGATATTGCTATTACTTTAGATATTATTTCATCTTTGAATGACGATTCTGGATTTGGATTCAATTCCTGGCAGATATCTGAAAAGATGACTTTAGGGGCTTTGATGCTCGAGGGTGACAATCATGAATTTTGGGTGGCAATGGGATGCATCTCTAACCATGATGCGTTGAAGCAACATGCTTTTATAAGGGCATTGCAGTTAGATGGATCTCTGGCTGGAGCCTGGGCTTATCTTGGGAAGTTATACTGGAATAGGGGCGAGAAGCAATTAGCAAGACAGGCTTTTGATTATGCTAGAAGTATAGATCCTTCTCTAGCATTACCCTGGGCTGGCATGTCGGCTGATTTGAACATTAGGGAGTCTTCATCAGATGAAGCATTTGAGAGCTGTTTGAGAGCTGCACAAATACTACCCGTGGCGGAATTCCAAATTGGTCTTGCCAAGCTTTCTCTGCATGCAGGCCATCTTTCATCTCCACAGGTGTTCGGAGCCATACGTCAGGCTGTTCAACTTGCACCTTGTTACCCTGAATCCTATAATCTCAATGGACTAGCTTTTGAGGCACAATTAGATTATCAATCTGCTGTTGCTGCTTATCGTTTAGCACACCTCACAATTAGCCATTTTTCAGATAGAGTTCCAAGGTCTCATGTCAGAGATATATCAATCAACTTAGCCAGATCACTCTGCATGGTTGGAAATTTCTTTGAAGCTTTGCAGGAATGTGAAAATTTGAGTAAAGAAGGCATGCTCGACATTGAAGGTTTGCAGGTTTATGCATTCTCTCTATGGAAGCTAGGAAAGAATGACGAGGCTCTTAGCACTGTGAGAACACTTGCTTCTGGTATCTCTGCCATGGAAAGCACACGTATGGCTGCGTCTGTTGGTTTCATATGCAGACTGTTGTGTTCAATATCTGGACTGGATTCCACAATTAACAGTATCATGAAGATGCCAGCCAACTTCTTCCAGAGTTCAAAAATGAGCTTTGTAGTGGCTGCTGTTCATGCTCTTGATAGTTGTGAGCGCCTTGAGTCCATTGTTTTAAGCAGTCGTTCCTGCCTCCAATCTCATGAAGAGATTACTAGAATGCACATTTTGATTACTCTTTCTAAGCTGATCAAATATCGAACAAATAACTGCCTGGGATTTCTCAATGGAGTGATGCATCTTAGAAAAGCTCTTCATGCATACCCCAACAGTAATTTGATCAGGAACTTGCTTGGTTATCTGTTGCTATCCGACGAAGAAGGGGATGACAATCACATAGCTACTAGGTGTTGCAACATGTTTTATGGTTTTGACCAACAGAACAAAGGTCTGAAATCTGCATATGAAATTCATGGTGCTGGAGCTGTGGCCTGCTATACAATTGGCACGAGTCATCCGAGGTTTTCTTTTCCAACATGTTCATACCAGTGCCAGAATGGAATTGGGACTATCCGACAACTTCAAAAATGCTTACGTCAAGAGCCATGGAATTGTGATGTTCAATATCTTCTTATACTAAACATTCTGCAGAAGGCACGTGAAGAAAGATTTCCCTGTCATCTACGTTCAACTATTGAGCGGCTAATCTTGGTTGCCTTCTCCAATGAACCATATTTTGAGAAAGATACATCTCATCATTATAAAAAGTTTCAGCTTCTACTTTGTGCATCTGAGATCAGTTTGCAAGGCGGTGGCCAAATTAAATGCATCAACTATGCCAAAGCTGCTTCCTCTATTTCACTTCCTGAAATGTATCTTTTTTATGCACACTTGTTACTGTGCCGAGCCTATGCTGCAGAAAGTGATTCTAACAACCTCCGTAAAGAGTTCATAAAATGTTTGGATTTAAAGACAGATAACTATCTTGGATGGGTATGCCTTAAATTCATTGCATCTGGATATGAGCTTCATGATGAATCCAATATATTAGAACTTAGTTTCAAGAAATGCTCATTAGAGAGCAAGAATCTGCAACACATGGTAATACCTATGTCTAGTCTGGTCGATGGTTTGATATCTTTTAGGAGCCAGGATTTTATGGCTGCTGAGAAGTATTTTGCACAAGCTTGTTCTTTGGGACACGATGATGGCTGTCTCCTCCTCTGTCATGGTGTAACCTGCATGGAACTTGCAAAGCAGCTTTGCAGTTCTCATTTCTTGAGGCTGGCTGTGAACAGTCTTCTTAAAGCTCAAGTAATTTCTGTTGTTCCAATACCAATTGTCTCGATCACACTGGCACAAGCAGAAGGGAGTCTTGGTCTGAAAGAAAATTGGGAGTCAGGCCTTCGTTTTGAATGGTTCTCGTGGCCACCAGATATGAGGCCTGCGGAGCTCTTATTTCAAATGCATCTACTTGCAAAACAGTCAAAAGTTGGTTCTGATCAATTGAGGGTTGAGTTATGTCAGTCTCCTCTGAGATGGGTTCTTCGTGCAATTCATGTAAACCCTTCTTGCATGAGATATTGGAAGGTGGTGCAAAGCTTGTGGAATGAGGGCTGA 3591 42.77 MMHISLHELEEVAVEKEHEGESETPRVTARQLQEAVDAHPDDPSSHFKLGIFMWENGGSHDKAAAADHFLKSAKLDPGNAAAFKYLGHYYATFSVDIERALKCYQRAVSLDVDDFHSGEALCDLLHHQGKESLEVAVCREASSKSPRAFWAFRRLGYLQVYQKKWTEAVLSLQHAIRGYPHCADLWEALGLAYQRLGRFTAAIKSYARAIEIEGDRILAWVESGNIFLMLGLLKKGVEHFRQALEISPKSITAQFGLSSGLLGLAKEYINRGAFKWASFLLEEASKVARGSTHLAANSSCIWKLLGDIQHTYAKCYPWMEEDWGQCSESFRTSILSWKQTRSLALFSAKCSYQQALHLAPWEANIYTDIAITLDIISSLNDDSGFGFNSWQISEKMTLGALMLEGDNHEFWVAMGCISNHDALKQHAFIRALQLDGSLAGAWAYLGKLYWNRGEKQLARQAFDYARSIDPSLALPWAGMSADLNIRESSSDEAFESCLRAAQILPVAEFQIGLAKLSLHAGHLSSPQVFGAIRQAVQLAPCYPESYNLNGLAFEAQLDYQSAVAAYRLAHLTISHFSDRVPRSHVRDISINLARSLCMVGNFFEALQECENLSKEGMLDIEGLQVYAFSLWKLGKNDEALSTVRTLASGISAMESTRMAASVGFICRLLCSISGLDSTINSIMKMPANFFQSSKMSFVVAAVHALDSCERLESIVLSSRSCLQSHEEITRMHILITLSKLIKYRTNNCLGFLNGVMHLRKALHAYPNSNLIRNLLGYLLLSDEEGDDNHIATRCCNMFYGFDQQNKGLKSAYEIHGAGAVACYTIGTSHPRFSFPTCSYQCQNGIGTIRQLQKCLRQEPWNCDVQYLLILNILQKAREERFPCHLRSTIERLILVAFSNEPYFEKDTSHHYKKFQLLLCASEISLQGGGQIKCINYAKAASSISLPEMYLFYAHLLLCRAYAAESDSNNLRKEFIKCLDLKTDNYLGWVCLKFIASGYELHDESNILELSFKKCSLESKNLQHMVIPMSSLVDGLISFRSQDFMAAEKYFAQACSLGHDDGCLLLCHGVTCMELAKQLCSSHFLRLAVNSLLKAQVISVVPIPIVSITLAQAEGSLGLKENWESGLRFEWFSWPPDMRPAELLFQMHLLAKQSKVGSDQLRVELCQSPLRWVLRAIHVNPSCMRYWKVVQSLWNEG 1196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31756839 31774170 + ClG42_11g0210000.10 Clacu11g2100 262977

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g2100 1196 SUPERFAMILY TPR-like 146 569 IPR011990 GO:0005515(InterPro)
Clacu11g2100 1196 Gene3D Tetratricopeptide repeat domain 389 648 IPR011990 GO:0005515(InterPro)
Clacu11g2100 1196 Gene3D Tetratricopeptide repeat domain 95 375 IPR011990 GO:0005515(InterPro)
Clacu11g2100 1196 ProSiteProfiles TPR repeat profile. 217 250 IPR019734 GO:0005515(InterPro)
Clacu11g2100 1196 ProSiteProfiles Rhodanese domain profile. 107 174 IPR001763 -
Clacu11g2100 1196 SMART tpr_5 217 250 IPR019734 GO:0005515(InterPro)
Clacu11g2100 1196 SMART tpr_5 543 576 IPR019734 GO:0005515(InterPro)
Clacu11g2100 1196 SMART tpr_5 149 182 IPR019734 GO:0005515(InterPro)
Clacu11g2100 1196 SMART tpr_5 183 216 IPR019734 GO:0005515(InterPro)
Clacu11g2100 1196 SMART tpr_5 439 472 IPR019734 GO:0005515(InterPro)
Clacu11g2100 1196 SMART tpr_5 80 114 IPR019734 GO:0005515(InterPro)
Clacu11g2100 1196 SMART tpr_5 258 291 IPR019734 GO:0005515(InterPro)
Clacu11g2100 1196 Gene3D Tetratricopeptide repeat domain 28 94 IPR011990 GO:0005515(InterPro)
Clacu11g2100 1196 SUPERFAMILY TPR-like 533 644 IPR011990 GO:0005515(InterPro)
Clacu11g2100 1196 PANTHER SUPERKILLER 3 PROTEIN-RELATED 15 1117 IPR039226 GO:0006401(InterPro)|GO:0034427(PANTHER)|GO:0055087(PANTHER)|GO:0055087(InterPro)
Clacu11g2100 1196 Pfam Tetratricopeptide repeat 154 211 - -
Clacu11g2100 1196 ProSiteProfiles TPR repeat region circular profile. 183 213 - -
Clacu11g2100 1196 ProSiteProfiles TPR repeat profile. 439 472 IPR019734 GO:0005515(InterPro)
Clacu11g2100 1196 ProSiteProfiles TPR repeat profile. 183 216 IPR019734 GO:0005515(InterPro)
Clacu11g2100 1196 SUPERFAMILY TPR-like 31 187 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g2100 K12600 - - csv:101220693 2163.27
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g20 . Blo12g00837 . Bda03g00338 . Bpe04g00298 Bma04g00307 Bma01g02430 . . Cma01g02054 . Car01g01618 . . . . . . . . . . . . . . . . . . . . . . Lsi04g02439 Csa04g02753 . . . . . . . . . . . Cmo01g02110 . . . . . . Cpe02g00004 . . . . . . . Cla11g01865 Cam11g1935 Cec11g1960 Cco11g1974 Clacu11g2100 Cmu11g1902 Cre11g2310 . . Chy07g00441 Cme07g00009
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007064 1 4 1 1 1 0 1 0 0 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 2 1 1 0 1 1 27