Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu11g2104 ATGCACATACGTAGTAACAAAAGGCCGGAGGGGACTTTTAAACTCCTACATCATAAAAATCAATTGGCTGATCGGAAGTCCCAGATGGTGAAGGAGACGGAATACTATGACGTGCTTGGAGTCAGCCCCGCGGCTACAGAAGCCGAAATCAAGAAAGCTTATTACATCAAGGCACGGCAGGTTCATCCAGATAAAAACCCGAGTGATCCTCTGGCAGCACAAAAATTTCAGGTTCTAGGAGAAGCTTACCAAGTATTAAGCGATCCAGCTCAAAGACAAGCTTATGATGCTCATGGGAAGTCTGGAATCTCAACTGATGCAATTATTGATCCTGCAGCAATTTTTGCAATGCTTTTTGGAAGTGAACTTTTTGAGGAATACATAGGTGAGCTTGCCATGGCATCGATGGCTTCTCTGGACATTTTCACTGAAGGGGAGCAATTTGATGCTAAACGGTTGCAAGAGAAGATGAGGATTGTCCAAAAGGAAAGAGAAGAAAAACTTTCAGAAATTTTGAAAGGTCGTCTCAACCAGTATGTTCAAGGGAACAAAGATGATTTTATTAATCATGCTGAAGCTGAAGTAGCAAGACTCTCCAACGCAGCCTATGGAGTTGACATGTTAAACACAATTGGTTATATATATGCCAGACAGGCTGCTAAAGAGCTTGGGAAGAAGGCAATTTATTTGGGCGTGCCATTTGTTGCTGAGTGGTTCAGAAACAAAGGGCACTTCATAAAATCCCAGGTCACAGCAGCCACAGGTGCTATTGCATTGATTCAACTGCAGGAGGACATGAAAAAGCAACTTAGTGCTGAAGGAAATTATACTGAAGAAGAGCTTGAAGAATACGTGCAATCTCATAAGAAATTGATGATTGATTCCCTCTGGAAATTGAACGTGGCTGACATTGAGGCCACTCTTTCCCGTGTCTGTCAACAGGTTCTTCAAGACAACAACGTCAAGAAGGAGGAGCTCCGTGCAAGGGCGAAGGGGTTGAAAACTCTTGGTAAAATTTTCCAGAGGGTTAAGTCAACCAATGGGAATGAGAGTGAACCAGTAGTAAAAGGTTCAGTAGACAAACTGAATGGAAGTGAATCAAGCCATGATGCTTCCCCAATTTCAACACTGAAATCTTCCGGCTATGAAGAAACATCTTTTGCAACACAGAGTCCCTATGTGGAGGCTCCCAATTTTGCAGGTGCACACTTTAATAACTATTTCCCCAGGCCAACACCGCCTCCAGATATGGTTGTATGTGTGGATAATCTTGCTAGAAAGCAGCTGCCATTCCTTTACTCGGGGGATGTGTTTGTTGTGGATATGTATTTAACAGACAGACTAATGGCTGTAGTCGGAACTTCTCATCATTCTGGCTGGCTGTGTTCACCGTTGGCCGCTTGGTGGTGA 1410 43.55 MHIRSNKRPEGTFKLLHHKNQLADRKSQMVKETEYYDVLGVSPAATEAEIKKAYYIKARQVHPDKNPSDPLAAQKFQVLGEAYQVLSDPAQRQAYDAHGKSGISTDAIIDPAAIFAMLFGSELFEEYIGELAMASMASLDIFTEGEQFDAKRLQEKMRIVQKEREEKLSEILKGRLNQYVQGNKDDFINHAEAEVARLSNAAYGVDMLNTIGYIYARQAAKELGKKAIYLGVPFVAEWFRNKGHFIKSQVTAATGAIALIQLQEDMKKQLSAEGNYTEEELEEYVQSHKKLMIDSLWKLNVADIEATLSRVCQQVLQDNNVKKEELRARAKGLKTLGKIFQRVKSTNGNESEPVVKGSVDKLNGSESSHDASPISTLKSSGYEETSFATQSPYVEAPNFAGAHFNNYFPRPTPPPDMVVCVDNLARKQLPFLYSGDVFVVDMYLTDRLMAVVGTSHHSGWLCSPLAAWW 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31794872 31819451 - ClG42_11g0210400.10 Clacu11g2104 262981

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu11g2104 469 Pfam X-domain of DnaJ-containing 161 352 IPR026894 -
Clacu11g2104 469 SUPERFAMILY Chaperone J-domain 29 127 IPR036869 -
Clacu11g2104 469 CDD DnaJ 34 88 IPR001623 -
Clacu11g2104 469 PRINTS DnaJ domain signature 54 69 IPR001623 -
Clacu11g2104 469 PRINTS DnaJ domain signature 91 110 IPR001623 -
Clacu11g2104 469 PRINTS DnaJ domain signature 36 54 IPR001623 -
Clacu11g2104 469 PRINTS DnaJ domain signature 71 91 IPR001623 -
Clacu11g2104 469 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 18 367 IPR052423 -
Clacu11g2104 469 FunFam Chaperone protein dnaJ 10 29 111 - -
Clacu11g2104 469 ProSiteProfiles dnaJ domain profile. 34 99 IPR001623 -
Clacu11g2104 469 ProSitePatterns Nt-dnaJ domain signature. 76 95 IPR018253 -
Clacu11g2104 469 Pfam DnaJ domain 34 96 IPR001623 -
Clacu11g2104 469 SMART dnaj_3 33 91 IPR001623 -
Clacu11g2104 469 Coils Coil 150 170 - -
Clacu11g2104 469 Gene3D DnaJ domain 19 111 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu11g2104 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0784 Clacu-Chr8:17866112 Clacu11g2104 Clacu-Chr11:31794872 1.20E-114 dispersed
Clacu11g0563 Clacu-Chr11:5298318 Clacu11g2104 Clacu-Chr11:31794872 1.50E-100 dispersed
Clacu11g2104 Clacu-Chr11:31794872 Clacu10g1711 Clacu-Chr10:30624048 2.30E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g3 Blo01g01664 . . Bda03g00342 Bpe02g00277 Bpe04g00302 Bma04g00311 Bma01g02435 . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1483 . Lsi04g02441 Csa04g02758 . . . . . Bda01g01580 Bpe02g01770 . . . . . . . . . . . . . . . . . . . Cla11g01868 Cam11g1938 Cec11g1964 . Clacu11g2104 Cmu11g1905 Cre11g2313 . . Chy07g00444 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002184 1 3 2 3 3 1 3 1 0 2 1 2 2 1 2 3 0 3 2 1 2 2 2 2 1 3 2 4 2 2 58