Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00001 ATGCGTACGGGCGTGCGCGTGGCGGGGCTTATGCGCGCACCCTCCCCAACCATCAGCGCTGCTTTCCTCTTCCTCCCCTTATGCATAATGGTCGTCTTGTCGGCTTCCGATGCCGAAACTCTCCTTCAATTCAAGCGCTCTTTGACCTCCACCACCTCTCTTCGCAGCTGGGACCCCTCTGTTCCTCCTTGCGACAACCGCAAGGCTAACTGGGCGGGTGTGCTTTGTATGAATGGCTATATTAAGGGTCTGCGGCTTGAGAATATGGGGCTTAAGGGCGAGGTTGATGTGAATCCCCTCGTTTCTTTGACTCATTTGCGCACCCTCAGCTTCATGAACAACACCTTGGTTGGGCCTTGGCCGAATGTTATAAGCAAACTAGGCAATCTACGATCTGTTTATCTCTCCTATAACCATTTTTCTGGAGAAATCCCAGACGATGCCTTTACCAGTATGAAATTTTTGAAGAAAGTGTTTTTAACCAATAATGAATTCAAGGGGCAAATTCCCTTATCTCTCGCTTCCGTGTCTACGCTTATGGAGTTGAGACTTGATGGAAACAAATTCAGAGGCCAAGTCCCCCACCTTGAAATGGATACTTTGAAGAAACTTAATGTTTCCAACAATGAGTTGAGGGGCCCCATACCTAGAAGCTTAAGCCATATGGATCCTACCTGTTTTTCAGGTAACAGTGATTTGTGTGGAGATCCTCTTCCACCATGCGAGATATCCCAGTTGTCACCCTCAGGGTTGCTGAAAATTGCGGTGATACTGATAGTTTTGGGGGTAACATTAGCAGTGACAGCTGCAATTTTCATCATTTTGGTTTTAAGGAAGCATCCAGCAGGAGGCAGTATTGAAGAGGAGAACAAGTACGGGAGTAAGCAAACAACAGCGGAGAGTGCATACAGATCCATGCAGTCGTCGTCGGTGGCACCGGCTCCGAAGAGGGGGGCAGAGCATGGCAAACTGTTGTTCGTGAGGAATGACCGGGAGAGGTTCGACTTACAGGATCTGCTCCGAGCGTCCGCCGAAGTATTGGGGAGTGGCTCATTTGGGTCTTCCTACAAAGCAACTGTTCCCTGTAGTGCGGTGGTGGTGAAGCGATACAAGCACATGAACAACGTGGGAAGAGAGGAGTTTCATGAGTACATGAGAAGGCTAGGCAGGTTGACGCATCCAAATCTACTGCCCCTGGTTGCCTATTATTACAGGAAGGAAGAGAAGCTCTTGATTTTCGACTTTGTAGACAACGGCAGTTTGGCAAGCCATCTGCACGGGAACCACAACTTAGAGGAGCCAGGCCTGGATTGGGGCGCCAGGTTGAAGATCATCAAAGGGATAGCAAGAGGGTTGTGTTACCTCTACACCTCCCTGCCCAACATAGCAGCACCCCATGGCCATCTCAAATCTTCAAACGTGCTGCTAGACGAGTCGTTTGAACCTCTGCTCACGGATTATGGCCTAATCCCGGTAGCCAACCTTGAGCACAGCCAAACACTGATGATGGCCTACAAATCACCGGAGTATACGCAGTTGGGGCGCATAACCAAGAAGAGCGATGTGTGGAGCCTGGGAATTGTGATACTGGAGATGTTGACTGGTAGGTTCCCAGAGAACTACCTCACCAGAAATCATGACATCAAAGCAGACCTGGCTAGTTGGGTGAACAACATGATAAAGGAAAAGAAGACTGCACAAGTGTTCGATGCAGAGCTGGGGAGAGCCAGGGAGAGCAACAAAGGCGAACTGTTGAAGATGCTGAAGATTGGGTTGAGTTGCTGTGAGGACGATGTGGATAGAAGATCGGACTTGAATGAGATAGTAAAACAAATTGAAGTGCTGAAGGAGGAAGAGTTAAGTGATGATGGAGTTGACTTCTCCCCACACTAA 1893 49.02 MRTGVRVAGLMRAPSPTISAAFLFLPLCIMVVLSASDAETLLQFKRSLTSTTSLRSWDPSVPPCDNRKANWAGVLCMNGYIKGLRLENMGLKGEVDVNPLVSLTHLRTLSFMNNTLVGPWPNVISKLGNLRSVYLSYNHFSGEIPDDAFTSMKFLKKVFLTNNEFKGQIPLSLASVSTLMELRLDGNKFRGQVPHLEMDTLKKLNVSNNELRGPIPRSLSHMDPTCFSGNSDLCGDPLPPCEISQLSPSGLLKIAVILIVLGVTLAVTAAIFIILVLRKHPAGGSIEEENKYGSKQTTAESAYRSMQSSSVAPAPKRGAEHGKLLFVRNDRERFDLQDLLRASAEVLGSGSFGSSYKATVPCSAVVVKRYKHMNNVGREEFHEYMRRLGRLTHPNLLPLVAYYYRKEEKLLIFDFVDNGSLASHLHGNHNLEEPGLDWGARLKIIKGIARGLCYLYTSLPNIAAPHGHLKSSNVLLDESFEPLLTDYGLIPVANLEHSQTLMMAYKSPEYTQLGRITKKSDVWSLGIVILEMLTGRFPENYLTRNHDIKADLASWVNNMIKEKKTAQVFDAELGRARESNKGELLKMLKIGLSCCEDDVDRRSDLNEIVKQIEVLKEEELSDDGVDFSPH 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1425 3725 - CmaCh01G000010.1 Cma01g00001 285694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00001 630 ProSiteProfiles Protein kinase domain profile. 341 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00001 630 Gene3D Phosphorylase Kinase; domain 1 308 415 - -
Cma01g00001 630 Gene3D Ribonuclease Inhibitor 151 241 IPR032675 -
Cma01g00001 630 Gene3D Transferase(Phosphotransferase) domain 1 416 626 - -
Cma01g00001 630 Pfam Leucine rich repeat N-terminal domain 35 76 IPR013210 -
Cma01g00001 630 SUPERFAMILY L domain-like 35 222 - -
Cma01g00001 630 Pfam Leucine Rich Repeat 201 221 IPR001611 GO:0005515
Cma01g00001 630 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 16 622 - -
Cma01g00001 630 Gene3D Ribonuclease Inhibitor 36 150 IPR032675 -
Cma01g00001 630 Pfam Protein tyrosine and serine/threonine kinase 345 612 IPR001245 GO:0004672|GO:0006468
Cma01g00001 630 SUPERFAMILY Protein kinase-like (PK-like) 345 616 IPR011009 -
Cma01g00001 630 PANTHER POLLEN RECEPTOR-LIKE KINASE 5 16 622 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00001 Cma-Chr1:1425 Cma11g00327 Cma-Chr11:1639465 0 dispersed
Cma01g00001 Cma-Chr1:1425 Cma12g01333 Cma-Chr12:10144846 1.11E-153 wgd
Cma01g00001 Cma-Chr1:1425 Cma14g01180 Cma-Chr14:9442176 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68233 PF00069 Pkinase 1.90E-28 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00001 - - cmo:103487533 974.156