Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00002 ATGATCAACCTGAGCAGTAGCTCAAGCGATGACTTTACAAGTCTGATTCAAGAGCCACAATCTGTGGAATCGTCATCCCCAAATGAGATTATTGTCATAGGGAGAGAGAGCTCCGTTACGGAAGATGATTTACACAATCTTAACGTTGATGAAACTTGTCACCTGGTGAACGCAGACCTACTGCAATGTCGGATATGCCTTGACACCGGAGGAGAAGATTTAATCGCGCCATGCCACTGCAAAGGCACTCAGAAGTATGTCCATAGATTATGTCTTGATAATTGGAGGTCCACAAAGGAGGGCTTTGCTTTTGCTCATTGTACAGAGTGCAGAGCTATGTTCATGATACGTGCAAATGTCCCTACTGATCGCTGGTGGTTAAGACTGAAGTTTCAGTTTCTCGTTGCTAGAGACCATGCGTTCATTTTCATCATTGTTCAGCTGATTGTGGCATTCTTGGGGGTGTTGGTGTACAAATTCTACGGGGAGGAACTAAGGGAAATGTTTGGTTACGAAGAACACCCATATGGGTTCTACGCCATGGCTGTCCTGGCTATCATCTTGGTTGGATTACTCTATGGATTCTTCATAGCGATTATATGCGGGCAGAGGATAAATGAACGCCACTACCATGTCCTTGCTAAGCAAGAACTGACAAAGGAGTATATAGTCGAAGATCGAGAACATAACAAAAGTGTTCCTGAACTAGACCCCAGACATGTTATGGAGCTAAGGATGTTAGGCCTGTATTAA 753 44.09 MINLSSSSSDDFTSLIQEPQSVESSSPNEIIVIGRESSVTEDDLHNLNVDETCHLVNADLLQCRICLDTGGEDLIAPCHCKGTQKYVHRLCLDNWRSTKEGFAFAHCTECRAMFMIRANVPTDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKSVPELDPRHVMELRMLGLY 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5881 11201 + CmaCh01G000020.1 Cma01g00002 285695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00002 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 116 IPR013083 -
Cma01g00002 250 CDD RING_CH-C4HC3_MARCH 63 111 - -
Cma01g00002 250 PANTHER OS02G0132300 PROTEIN 21 249 - -
Cma01g00002 250 ProSiteProfiles Zinc finger RING-CH-type profile. 55 117 IPR011016 GO:0008270
Cma01g00002 250 SUPERFAMILY RING/U-box 59 114 - -
Cma01g00002 250 MobiDBLite consensus disorder prediction 1 27 - -
Cma01g00002 250 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 21 249 - -
Cma01g00002 250 SMART ringv_2 62 111 IPR011016 GO:0008270
Cma01g00002 250 Pfam RING-variant domain 63 110 IPR011016 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00002 Cma-Chr1:5881 Cma11g00552 Cma-Chr11:2665204 1.90E-35 dispersed
Cma01g00002 Cma-Chr1:5881 Cma14g01188 Cma-Chr14:9513675 5.12E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00002 - - cpep:111788515 497.278