Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g00002 | ATGATCAACCTGAGCAGTAGCTCAAGCGATGACTTTACAAGTCTGATTCAAGAGCCACAATCTGTGGAATCGTCATCCCCAAATGAGATTATTGTCATAGGGAGAGAGAGCTCCGTTACGGAAGATGATTTACACAATCTTAACGTTGATGAAACTTGTCACCTGGTGAACGCAGACCTACTGCAATGTCGGATATGCCTTGACACCGGAGGAGAAGATTTAATCGCGCCATGCCACTGCAAAGGCACTCAGAAGTATGTCCATAGATTATGTCTTGATAATTGGAGGTCCACAAAGGAGGGCTTTGCTTTTGCTCATTGTACAGAGTGCAGAGCTATGTTCATGATACGTGCAAATGTCCCTACTGATCGCTGGTGGTTAAGACTGAAGTTTCAGTTTCTCGTTGCTAGAGACCATGCGTTCATTTTCATCATTGTTCAGCTGATTGTGGCATTCTTGGGGGTGTTGGTGTACAAATTCTACGGGGAGGAACTAAGGGAAATGTTTGGTTACGAAGAACACCCATATGGGTTCTACGCCATGGCTGTCCTGGCTATCATCTTGGTTGGATTACTCTATGGATTCTTCATAGCGATTATATGCGGGCAGAGGATAAATGAACGCCACTACCATGTCCTTGCTAAGCAAGAACTGACAAAGGAGTATATAGTCGAAGATCGAGAACATAACAAAAGTGTTCCTGAACTAGACCCCAGACATGTTATGGAGCTAAGGATGTTAGGCCTGTATTAA | 753 | 44.09 | MINLSSSSSDDFTSLIQEPQSVESSSPNEIIVIGRESSVTEDDLHNLNVDETCHLVNADLLQCRICLDTGGEDLIAPCHCKGTQKYVHRLCLDNWRSTKEGFAFAHCTECRAMFMIRANVPTDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKSVPELDPRHVMELRMLGLY | 250 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 5881 | 11201 | + | CmaCh01G000020.1 | Cma01g00002 | 285695 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g00002 | 250 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 57 | 116 | IPR013083 | - | |
Cma01g00002 | 250 | CDD | RING_CH-C4HC3_MARCH | 63 | 111 | - | - | |
Cma01g00002 | 250 | PANTHER | OS02G0132300 PROTEIN | 21 | 249 | - | - | |
Cma01g00002 | 250 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 55 | 117 | IPR011016 | GO:0008270 | |
Cma01g00002 | 250 | SUPERFAMILY | RING/U-box | 59 | 114 | - | - | |
Cma01g00002 | 250 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Cma01g00002 | 250 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 21 | 249 | - | - | |
Cma01g00002 | 250 | SMART | ringv_2 | 62 | 111 | IPR011016 | GO:0008270 | |
Cma01g00002 | 250 | Pfam | RING-variant domain | 63 | 110 | IPR011016 | GO:0008270 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00002 | Cma-Chr1:5881 | Cma11g00552 | Cma-Chr11:2665204 | 1.90E-35 | dispersed | |
Cma01g00002 | Cma-Chr1:5881 | Cma14g01188 | Cma-Chr14:9513675 | 5.12E-163 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g00002 | - | - | cpep:111788515 | 497.278 |