Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma01g00010 | ATGGAACCCTACCATGAAGTTTCAGAAACGCCAGAGCAGATTATACTACGCTGGGACTCTGCCGCGCCGGATGAAGTGAAGGATAACATGATTTTTGACTCCGACAGGGAAGAGATCGACCGATACTTGCGGGCCGTCGATGAAATCCAGAGGTCGATGTCGTCGGCTTCGATATTGGACGATCAGAACAAAGTCGATTCCACTATGCAGATTGCCATGGCCAGGCTTGAGGATGAGTTCCGTCACATTCTGTCCACTCATATCATTCCGATCGAGGTCGAGTCGCTTACTGATCCGTCTCCATCTGCTTGCTCCATGTCCAGTTGTACGAGTGGTGTCTTCGAGGACGTGAACGACGACGAAGCGGATTCGCAGGAAGTTCACCTCAATTTAAGTGGTAGTCCAAGTTTTGGGTCAAGTGGACGATCGAGCTATCGGAGGACGAGCAGTATTCGTGAAATTGATCTGATACCTTCGGGGGCGATTATCGATCTACGGAGTATTGCTGAGAGGATGATAGCGGCAGGGTACCTGCGCGAGTGCATCCAAGTCTATGGCAGTGTGCGAAAGTCCACCTTCGACTCCAGCTTCAAACGCCTCGGAATTGAGAAACTGAGCATTGGAGATATCCAGAGGTTGGATTGGAACGAGCTGGTGACGAAGATCAGGAGGTGGATCAGAGCGGCAAAGATTTCCCTTAGGATTCTGTTTTCCAGCGAGAAGAGGCTCTGCCAGCAAATCTTCTATGGCATAGGGACCGCCATAGAGGATGCTTGTTTCATGGAGACTGTTAAAGGTTCTGTGACTCAATTGTTCAATTTCGCCGAAGCGATCAGTATTAGCCGCAGATCGCCGGAGAAGCTGTTCAAGATTCTAGACCTCCACGATGCCTTAACAGATTTGATACCTGACATTGATGTTATATTCGAATCAAAATCGGCGGAATATATTCGGATTCAGGCGGCGGAGATATTGTTGCGGCTGGGGGAGGCCGTCAGAGGAACTTTATCGGAGTTTGAAAACGCGGTGCTGCGAGAGCCGTCGCTGCATCCGGTGCTGGGCGGGACGGTTCATCCGTTGACAAGGTATGTGATGAACTATGTGAGTCTGATTTCCGAATACCAAGTAGCCTTAGAGGAGCTCATCGTGTCCAAACCGTCGACGGGCTCGAGGAACTCGGCAGATATGGATGAGTTCGCGGAGGTAGAGGGGAAAACCCCGCTAGCGCTCCATCTGATATGGAGCATCGTGATTCTGCAATTGAATTTGGAGGGAAAATCCAGGCAGTACAAAGACCCTTCTCTAGCTCATTTCTTTATCATGAACAACGTTCATTACATTGTTGAGAAGATAAGAGGATCCCCGGAATTGCGAGACATTATTGGAGAGGTTTATCTGAAAAGGATGACCGGGAAGTATCGACAGGCGGCGACAAACTACGAGCGAACAACGTGGGTGAATGTGGTGTACTGCCTGCGGAACGAAGGGTTGAATGCGGGGGGGAGCTTGTCTTCAGCCCCCTCAAAGAGCGCTATTAGAGAGAGAATGAAGAGTTTCAACGCCATGTTTGAGGAGGTTCACAGGACGCAGTCGGCATGGTTGATCCCAGATCCTCTGCTGAAGGAGGAGCTTCGCATATCCATAACCGAGAAGTTGATCCCGGCTTACAGGTCGTTTCTTGGCCTCCATGGTCACCACATAGAGAGTGGAAGGCACCCAGAAAATTACATCAAGTACTCGGTTGAGGAACTGGAAAATGGCATCCTGGATTTCTTTGAGGAAGAACCAAACCGAGTGTTGTTTTCTTGGCGACAAAGCTTCGGCTTTCTTTACATCGCTCCTCCTGTTTACACACATTTCACTCGAGCAAGAAGAATCGGAAGAGGTGAAGCGGAGGTGGATACGATCGTCACATCACAATTTTCTCACCCGAAGCTCGTCTTTTTCAAGTTGGTGTGTATCTTAGTTCTTGCAGTCCACTTTCTTTCTGGTTGTTTTGGGGGAATAAAATATGCATTTAAGGCTGTCAAGGCTGCTGGAATTACTTCTATTGGCGTTCGCGGTAAAGATTCAGTTTGTGTTGTGACCCAAAACAAGGTTCCGGACAAACTTCTGTATCAATCAAGTGTCTCACATCTTGTCCCTATCACAAAGTACCTAGGGTTGTTAGCAACAGGCGTGACAGCTGATGCCAGAACATTGGTTCAGCAAGCAAGGAATGAAGCAGCCGAGATTCGTTTTAGATATGGATATGAGATGCCGGTGGATGTATCAGCTAAATGGTGTTCGGAAATCTCTGCGACCACTATCACAGAACCAATGGCGGTGATAGCAGCGCCAGTCCCGGAAAATCCTCCGGCGGCAACGCTTATTGGGCAAATGGAAGTTGAATTTTTTGCCAACTGCCAGTGTTGTGGGCTGACGGAGGAGTGTACAGAGGCTTACATCGAGGGAGTCCGCCGTCGATTCGACGGAAAATGGATTTGCGGCCTGGCCACCTCCGGACCCGACGCCCCATCTGATAACGGCAATGAGACAGATCCTCCGCCGAGTTTAGACTCCCCAAGAGCCTTGAGGTCCAAGCGGACCAGTCGAACCTCCAGCGCAGACAAAATTGGCGGCCGGGTTCTTGGTTGA | 2637 | 49.72 | MEPYHEVSETPEQIILRWDSAAPDEVKDNMIFDSDREEIDRYLRAVDEIQRSMSSASILDDQNKVDSTMQIAMARLEDEFRHILSTHIIPIEVESLTDPSPSACSMSSCTSGVFEDVNDDEADSQEVHLNLSGSPSFGSSGRSSYRRTSSIREIDLIPSGAIIDLRSIAERMIAAGYLRECIQVYGSVRKSTFDSSFKRLGIEKLSIGDIQRLDWNELVTKIRRWIRAAKISLRILFSSEKRLCQQIFYGIGTAIEDACFMETVKGSVTQLFNFAEAISISRRSPEKLFKILDLHDALTDLIPDIDVIFESKSAEYIRIQAAEILLRLGEAVRGTLSEFENAVLREPSLHPVLGGTVHPLTRYVMNYVSLISEYQVALEELIVSKPSTGSRNSADMDEFAEVEGKTPLALHLIWSIVILQLNLEGKSRQYKDPSLAHFFIMNNVHYIVEKIRGSPELRDIIGEVYLKRMTGKYRQAATNYERTTWVNVVYCLRNEGLNAGGSLSSAPSKSAIRERMKSFNAMFEEVHRTQSAWLIPDPLLKEELRISITEKLIPAYRSFLGLHGHHIESGRHPENYIKYSVEELENGILDFFEEEPNRVLFSWRQSFGFLYIAPPVYTHFTRARRIGRGEAEVDTIVTSQFSHPKLVFFKLVCILVLAVHFLSGCFGGIKYAFKAVKAAGITSIGVRGKDSVCVVTQNKVPDKLLYQSSVSHLVPITKYLGLLATGVTADARTLVQQARNEAAEIRFRYGYEMPVDVSAKWCSEISATTITEPMAVIAAPVPENPPAATLIGQMEVEFFANCQCCGLTEECTEAYIEGVRRRFDGKWICGLATSGPDAPSDNGNETDPPPSLDSPRALRSKRTSRTSSADKIGGRVLG | 878 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 32956 | 43354 | - | CmaCh01G000100.1 | Cma01g00010 | 285703 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma01g00010 | 878 | MobiDBLite | consensus disorder prediction | 834 | 878 | - | - | |
| Cma01g00010 | 878 | Gene3D | Exocyst complex component Exo70 | 14 | 599 | - | - | |
| Cma01g00010 | 878 | SUPERFAMILY | Cullin repeat-like | 4 | 593 | IPR016159 | - | |
| Cma01g00010 | 878 | Pfam | Proteasome subunit | 680 | 771 | IPR001353 | GO:0005839|GO:0051603 | |
| Cma01g00010 | 878 | Pfam | Protein of unknown function (DUF1677) | 800 | 833 | IPR012876 | - | |
| Cma01g00010 | 878 | Gene3D | Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 | 662 | 777 | IPR029055 | - | |
| Cma01g00010 | 878 | PANTHER | EXOCYST SUBUNIT EXO70 FAMILY PROTEIN | 7 | 599 | - | - | |
| Cma01g00010 | 878 | SUPERFAMILY | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 664 | 767 | IPR029055 | - | |
| Cma01g00010 | 878 | Pfam | Exo70 exocyst complex subunit | 224 | 589 | IPR046364 | GO:0000145|GO:0005546|GO:0006887 | |
| Cma01g00010 | 878 | PANTHER | EXOCYST COMPLEX PROTEIN EXO70 | 7 | 599 | IPR004140 | GO:0000145|GO:0006887 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma01g00010 | Cma-Chr1:32956 | Cma13g00803 | Cma-Chr13:6823642 | 3.12E-146 | dispersed | |
| Cma14g01199 | Cma-Chr14:9583679 | Cma01g00010 | Cma-Chr1:32956 | 0 | transposed | |
| Cma01g00010 | Cma-Chr1:32956 | Cma14g01197 | Cma-Chr14:9571057 | 1.68E-50 | wgd | |
| Cma01g00010 | Cma-Chr1:32956 | Cma17g00679 | Cma-Chr17:5684848 | 1.82E-48 | wgd | |
| Cma01g00010 | Cma-Chr1:32956 | Cma08g00806 | Cma-Chr8:4867919 | 1.78E-36 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma01g00010 | K07195 | - | csv:101204229 | 967.607 |