Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00010 ATGGAACCCTACCATGAAGTTTCAGAAACGCCAGAGCAGATTATACTACGCTGGGACTCTGCCGCGCCGGATGAAGTGAAGGATAACATGATTTTTGACTCCGACAGGGAAGAGATCGACCGATACTTGCGGGCCGTCGATGAAATCCAGAGGTCGATGTCGTCGGCTTCGATATTGGACGATCAGAACAAAGTCGATTCCACTATGCAGATTGCCATGGCCAGGCTTGAGGATGAGTTCCGTCACATTCTGTCCACTCATATCATTCCGATCGAGGTCGAGTCGCTTACTGATCCGTCTCCATCTGCTTGCTCCATGTCCAGTTGTACGAGTGGTGTCTTCGAGGACGTGAACGACGACGAAGCGGATTCGCAGGAAGTTCACCTCAATTTAAGTGGTAGTCCAAGTTTTGGGTCAAGTGGACGATCGAGCTATCGGAGGACGAGCAGTATTCGTGAAATTGATCTGATACCTTCGGGGGCGATTATCGATCTACGGAGTATTGCTGAGAGGATGATAGCGGCAGGGTACCTGCGCGAGTGCATCCAAGTCTATGGCAGTGTGCGAAAGTCCACCTTCGACTCCAGCTTCAAACGCCTCGGAATTGAGAAACTGAGCATTGGAGATATCCAGAGGTTGGATTGGAACGAGCTGGTGACGAAGATCAGGAGGTGGATCAGAGCGGCAAAGATTTCCCTTAGGATTCTGTTTTCCAGCGAGAAGAGGCTCTGCCAGCAAATCTTCTATGGCATAGGGACCGCCATAGAGGATGCTTGTTTCATGGAGACTGTTAAAGGTTCTGTGACTCAATTGTTCAATTTCGCCGAAGCGATCAGTATTAGCCGCAGATCGCCGGAGAAGCTGTTCAAGATTCTAGACCTCCACGATGCCTTAACAGATTTGATACCTGACATTGATGTTATATTCGAATCAAAATCGGCGGAATATATTCGGATTCAGGCGGCGGAGATATTGTTGCGGCTGGGGGAGGCCGTCAGAGGAACTTTATCGGAGTTTGAAAACGCGGTGCTGCGAGAGCCGTCGCTGCATCCGGTGCTGGGCGGGACGGTTCATCCGTTGACAAGGTATGTGATGAACTATGTGAGTCTGATTTCCGAATACCAAGTAGCCTTAGAGGAGCTCATCGTGTCCAAACCGTCGACGGGCTCGAGGAACTCGGCAGATATGGATGAGTTCGCGGAGGTAGAGGGGAAAACCCCGCTAGCGCTCCATCTGATATGGAGCATCGTGATTCTGCAATTGAATTTGGAGGGAAAATCCAGGCAGTACAAAGACCCTTCTCTAGCTCATTTCTTTATCATGAACAACGTTCATTACATTGTTGAGAAGATAAGAGGATCCCCGGAATTGCGAGACATTATTGGAGAGGTTTATCTGAAAAGGATGACCGGGAAGTATCGACAGGCGGCGACAAACTACGAGCGAACAACGTGGGTGAATGTGGTGTACTGCCTGCGGAACGAAGGGTTGAATGCGGGGGGGAGCTTGTCTTCAGCCCCCTCAAAGAGCGCTATTAGAGAGAGAATGAAGAGTTTCAACGCCATGTTTGAGGAGGTTCACAGGACGCAGTCGGCATGGTTGATCCCAGATCCTCTGCTGAAGGAGGAGCTTCGCATATCCATAACCGAGAAGTTGATCCCGGCTTACAGGTCGTTTCTTGGCCTCCATGGTCACCACATAGAGAGTGGAAGGCACCCAGAAAATTACATCAAGTACTCGGTTGAGGAACTGGAAAATGGCATCCTGGATTTCTTTGAGGAAGAACCAAACCGAGTGTTGTTTTCTTGGCGACAAAGCTTCGGCTTTCTTTACATCGCTCCTCCTGTTTACACACATTTCACTCGAGCAAGAAGAATCGGAAGAGGTGAAGCGGAGGTGGATACGATCGTCACATCACAATTTTCTCACCCGAAGCTCGTCTTTTTCAAGTTGGTGTGTATCTTAGTTCTTGCAGTCCACTTTCTTTCTGGTTGTTTTGGGGGAATAAAATATGCATTTAAGGCTGTCAAGGCTGCTGGAATTACTTCTATTGGCGTTCGCGGTAAAGATTCAGTTTGTGTTGTGACCCAAAACAAGGTTCCGGACAAACTTCTGTATCAATCAAGTGTCTCACATCTTGTCCCTATCACAAAGTACCTAGGGTTGTTAGCAACAGGCGTGACAGCTGATGCCAGAACATTGGTTCAGCAAGCAAGGAATGAAGCAGCCGAGATTCGTTTTAGATATGGATATGAGATGCCGGTGGATGTATCAGCTAAATGGTGTTCGGAAATCTCTGCGACCACTATCACAGAACCAATGGCGGTGATAGCAGCGCCAGTCCCGGAAAATCCTCCGGCGGCAACGCTTATTGGGCAAATGGAAGTTGAATTTTTTGCCAACTGCCAGTGTTGTGGGCTGACGGAGGAGTGTACAGAGGCTTACATCGAGGGAGTCCGCCGTCGATTCGACGGAAAATGGATTTGCGGCCTGGCCACCTCCGGACCCGACGCCCCATCTGATAACGGCAATGAGACAGATCCTCCGCCGAGTTTAGACTCCCCAAGAGCCTTGAGGTCCAAGCGGACCAGTCGAACCTCCAGCGCAGACAAAATTGGCGGCCGGGTTCTTGGTTGA 2637 49.72 MEPYHEVSETPEQIILRWDSAAPDEVKDNMIFDSDREEIDRYLRAVDEIQRSMSSASILDDQNKVDSTMQIAMARLEDEFRHILSTHIIPIEVESLTDPSPSACSMSSCTSGVFEDVNDDEADSQEVHLNLSGSPSFGSSGRSSYRRTSSIREIDLIPSGAIIDLRSIAERMIAAGYLRECIQVYGSVRKSTFDSSFKRLGIEKLSIGDIQRLDWNELVTKIRRWIRAAKISLRILFSSEKRLCQQIFYGIGTAIEDACFMETVKGSVTQLFNFAEAISISRRSPEKLFKILDLHDALTDLIPDIDVIFESKSAEYIRIQAAEILLRLGEAVRGTLSEFENAVLREPSLHPVLGGTVHPLTRYVMNYVSLISEYQVALEELIVSKPSTGSRNSADMDEFAEVEGKTPLALHLIWSIVILQLNLEGKSRQYKDPSLAHFFIMNNVHYIVEKIRGSPELRDIIGEVYLKRMTGKYRQAATNYERTTWVNVVYCLRNEGLNAGGSLSSAPSKSAIRERMKSFNAMFEEVHRTQSAWLIPDPLLKEELRISITEKLIPAYRSFLGLHGHHIESGRHPENYIKYSVEELENGILDFFEEEPNRVLFSWRQSFGFLYIAPPVYTHFTRARRIGRGEAEVDTIVTSQFSHPKLVFFKLVCILVLAVHFLSGCFGGIKYAFKAVKAAGITSIGVRGKDSVCVVTQNKVPDKLLYQSSVSHLVPITKYLGLLATGVTADARTLVQQARNEAAEIRFRYGYEMPVDVSAKWCSEISATTITEPMAVIAAPVPENPPAATLIGQMEVEFFANCQCCGLTEECTEAYIEGVRRRFDGKWICGLATSGPDAPSDNGNETDPPPSLDSPRALRSKRTSRTSSADKIGGRVLG 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32956 43354 - CmaCh01G000100.1 Cma01g00010 285703

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00010 878 MobiDBLite consensus disorder prediction 834 878 - -
Cma01g00010 878 Gene3D Exocyst complex component Exo70 14 599 - -
Cma01g00010 878 SUPERFAMILY Cullin repeat-like 4 593 IPR016159 -
Cma01g00010 878 Pfam Proteasome subunit 680 771 IPR001353 GO:0005839|GO:0051603
Cma01g00010 878 Pfam Protein of unknown function (DUF1677) 800 833 IPR012876 -
Cma01g00010 878 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 662 777 IPR029055 -
Cma01g00010 878 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 7 599 - -
Cma01g00010 878 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 664 767 IPR029055 -
Cma01g00010 878 Pfam Exo70 exocyst complex subunit 224 589 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cma01g00010 878 PANTHER EXOCYST COMPLEX PROTEIN EXO70 7 599 IPR004140 GO:0000145|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00010 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101204229 967.607
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00010 Cma-Chr1:32956 Cma13g00803 Cma-Chr13:6823642 3.12E-146 dispersed
Cma14g01199 Cma-Chr14:9583679 Cma01g00010 Cma-Chr1:32956 0 transposed
Cma01g00010 Cma-Chr1:32956 Cma14g01197 Cma-Chr14:9571057 1.68E-50 wgd
Cma01g00010 Cma-Chr1:32956 Cma17g00679 Cma-Chr17:5684848 1.82E-48 wgd
Cma01g00010 Cma-Chr1:32956 Cma08g00806 Cma-Chr8:4867919 1.78E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g67 Blo05g00033 Blo06g00756 Bda04g00941 Bda10g00882 Bpe06g00808 Bpe10g00709 . . . . Cma01g00010 . Car01g00006 Car14g01052 . . . Bhi01g02900 . . Lac12g2533 . . . . . . . . . . Cone20ag1348 Cone17ag0057 . . . . . . . . . . . . Bma09g00990 Bma15g00313 . Cmo01g00011 . . . . . . . . . . . . . . . . . . . . . . Csa03g02774 . Cme04g01362
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma18g00955 . 28 671 EXO70 exocyst subunit family AT5G03540 76.9 1.0e-286 983.0
Cma04g01443 . 56 697 EXO70 exocyst subunit family AT5G03540 74.7 5.7e-277 950.7
Cma07g00826 . 1 639 EXO70 exocyst subunit family AT5G03540 68.6 2.8e-255 878.6
Cma03g01120 . 1 636 EXO70 exocyst subunit family AT5G03540 68.7 3.1e-254 875.2
Cma07g00826 . 1 639 EXO70 exocyst subunit family AT5G52340 75.7 3.5e-284 974.5
Cma03g01120 . 1 636 EXO70 exocyst subunit family AT5G52340 76.5 7.9e-284 973.4
Cma18g00955 . 30 671 EXO70 exocyst subunit family AT5G52340 74.0 4.5e-271 931.0
Cma04g01443 . 58 697 EXO70 exocyst subunit family AT5G52340 73.4 5.5e-269 924.1
Cma07g00826 . 145 632 EXO70 exocyst subunit family AT5G52350 61.5 4.6e-169 592.0
Cma03g01120 . 145 629 EXO70 exocyst subunit family AT5G52350 62.1 6.0e-169 591.7
Cma04g01443 . 193 697 EXO70 exocyst subunit family AT5G52350 58.5 1.4e-165 580.5
Cma18g00955 . 165 671 EXO70 exocyst subunit family AT5G52350 58.9 1.4e-165 580.5
Cma01g00707 CST 1 624 EXO70 exocyst subunit family AT5G58430 65.7 3.7e-241 831.6
Cma13g00032 CST 1 625 EXO70 exocyst subunit family AT5G58430 64.9 9.0e-240 827.0
Cma13g00032 CST 1 624 EXO70 exocyst subunit family AT1G07000 51.7 4.1e-173 605.5
Cma01g00707 CST 1 623 EXO70 exocyst subunit family AT1G07000 50.9 1.1e-170 597.4
Cma06g01676 . 58 671 EXO70 exocyst subunit family AT5G13150 52.2 2.3e-169 593.2
Cma14g01446 . 61 675 EXO70 exocyst subunit family AT5G13150 51.6 1.4e-166 583.9
Cma04g02280 . 81 682 EXO70 exocyst subunit family AT5G13990 53.7 5.4e-185 645.2
Cma15g00757 . 94 700 EXO70 exocyst subunit family AT5G13990 52.5 1.9e-182 636.7
Cma14g01199 . 12 611 EXO70 exocyst subunit family AT1G72470 63.7 1.6e-212 736.5
Cma01g00010 . 9 593 EXO70 exocyst subunit family AT1G72470 60.3 6.8e-195 677.9
Cma14g01199 . 12 609 EXO70 exocyst subunit family AT1G54090 62.0 2.0e-207 719.5
Cma01g00010 . 9 593 EXO70 exocyst subunit family AT1G54090 59.1 1.8e-192 669.8
Cma14g01199 . 9 610 EXO70 exocyst subunit family AT3G14090 63.0 4.1e-216 748.4
Cma01g00010 . 9 593 EXO70 exocyst subunit family AT3G14090 61.5 6.3e-201 698.0
Cma11g00035 CCT,CST,ECH 14 648 EXO70 exocyst subunit family AT5G50380 63.3 1.7e-228 789.6
Cma13g00803 CCT,CST 17 655 EXO70 exocyst subunit family AT5G50380 62.3 9.6e-227 783.9
Cma10g00065 CCT,CST 13 651 EXO70 exocyst subunit family AT5G50380 61.8 1.6e-226 783.1
Cma18g00319 CCT,CST 19 658 EXO70 exocyst subunit family AT5G50380 61.9 1.7e-223 773.1
Cma12g00298 . 15 682 EXO70 exocyst subunit family AT4G31540 73.0 2.5e-291 998.4
Cma05g00623 . 13 682 EXO70 exocyst subunit family AT4G31540 73.2 1.6e-290 995.7
Cma04g01215 . 24 610 EXO70 exocyst subunit family AT2G39380 50.3 2.8e-148 523.1
Cma14g00174 . 26 630 EXO70 exocyst subunit family AT3G09520 55.3 6.8e-179 624.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0022053 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g00010 Cma_Chr01 FPKM 4.376185 4.143178 2.147781 2.645113 0.96108 1.133353 0.876495 0.946518 0.908086 0.883081