Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00010 ATGGAACCCTACCATGAAGTTTCAGAAACGCCAGAGCAGATTATACTACGCTGGGACTCTGCCGCGCCGGATGAAGTGAAGGATAACATGATTTTTGACTCCGACAGGGAAGAGATCGACCGATACTTGCGGGCCGTCGATGAAATCCAGAGGTCGATGTCGTCGGCTTCGATATTGGACGATCAGAACAAAGTCGATTCCACTATGCAGATTGCCATGGCCAGGCTTGAGGATGAGTTCCGTCACATTCTGTCCACTCATATCATTCCGATCGAGGTCGAGTCGCTTACTGATCCGTCTCCATCTGCTTGCTCCATGTCCAGTTGTACGAGTGGTGTCTTCGAGGACGTGAACGACGACGAAGCGGATTCGCAGGAAGTTCACCTCAATTTAAGTGGTAGTCCAAGTTTTGGGTCAAGTGGACGATCGAGCTATCGGAGGACGAGCAGTATTCGTGAAATTGATCTGATACCTTCGGGGGCGATTATCGATCTACGGAGTATTGCTGAGAGGATGATAGCGGCAGGGTACCTGCGCGAGTGCATCCAAGTCTATGGCAGTGTGCGAAAGTCCACCTTCGACTCCAGCTTCAAACGCCTCGGAATTGAGAAACTGAGCATTGGAGATATCCAGAGGTTGGATTGGAACGAGCTGGTGACGAAGATCAGGAGGTGGATCAGAGCGGCAAAGATTTCCCTTAGGATTCTGTTTTCCAGCGAGAAGAGGCTCTGCCAGCAAATCTTCTATGGCATAGGGACCGCCATAGAGGATGCTTGTTTCATGGAGACTGTTAAAGGTTCTGTGACTCAATTGTTCAATTTCGCCGAAGCGATCAGTATTAGCCGCAGATCGCCGGAGAAGCTGTTCAAGATTCTAGACCTCCACGATGCCTTAACAGATTTGATACCTGACATTGATGTTATATTCGAATCAAAATCGGCGGAATATATTCGGATTCAGGCGGCGGAGATATTGTTGCGGCTGGGGGAGGCCGTCAGAGGAACTTTATCGGAGTTTGAAAACGCGGTGCTGCGAGAGCCGTCGCTGCATCCGGTGCTGGGCGGGACGGTTCATCCGTTGACAAGGTATGTGATGAACTATGTGAGTCTGATTTCCGAATACCAAGTAGCCTTAGAGGAGCTCATCGTGTCCAAACCGTCGACGGGCTCGAGGAACTCGGCAGATATGGATGAGTTCGCGGAGGTAGAGGGGAAAACCCCGCTAGCGCTCCATCTGATATGGAGCATCGTGATTCTGCAATTGAATTTGGAGGGAAAATCCAGGCAGTACAAAGACCCTTCTCTAGCTCATTTCTTTATCATGAACAACGTTCATTACATTGTTGAGAAGATAAGAGGATCCCCGGAATTGCGAGACATTATTGGAGAGGTTTATCTGAAAAGGATGACCGGGAAGTATCGACAGGCGGCGACAAACTACGAGCGAACAACGTGGGTGAATGTGGTGTACTGCCTGCGGAACGAAGGGTTGAATGCGGGGGGGAGCTTGTCTTCAGCCCCCTCAAAGAGCGCTATTAGAGAGAGAATGAAGAGTTTCAACGCCATGTTTGAGGAGGTTCACAGGACGCAGTCGGCATGGTTGATCCCAGATCCTCTGCTGAAGGAGGAGCTTCGCATATCCATAACCGAGAAGTTGATCCCGGCTTACAGGTCGTTTCTTGGCCTCCATGGTCACCACATAGAGAGTGGAAGGCACCCAGAAAATTACATCAAGTACTCGGTTGAGGAACTGGAAAATGGCATCCTGGATTTCTTTGAGGAAGAACCAAACCGAGTGTTGTTTTCTTGGCGACAAAGCTTCGGCTTTCTTTACATCGCTCCTCCTGTTTACACACATTTCACTCGAGCAAGAAGAATCGGAAGAGGTGAAGCGGAGGTGGATACGATCGTCACATCACAATTTTCTCACCCGAAGCTCGTCTTTTTCAAGTTGGTGTGTATCTTAGTTCTTGCAGTCCACTTTCTTTCTGGTTGTTTTGGGGGAATAAAATATGCATTTAAGGCTGTCAAGGCTGCTGGAATTACTTCTATTGGCGTTCGCGGTAAAGATTCAGTTTGTGTTGTGACCCAAAACAAGGTTCCGGACAAACTTCTGTATCAATCAAGTGTCTCACATCTTGTCCCTATCACAAAGTACCTAGGGTTGTTAGCAACAGGCGTGACAGCTGATGCCAGAACATTGGTTCAGCAAGCAAGGAATGAAGCAGCCGAGATTCGTTTTAGATATGGATATGAGATGCCGGTGGATGTATCAGCTAAATGGTGTTCGGAAATCTCTGCGACCACTATCACAGAACCAATGGCGGTGATAGCAGCGCCAGTCCCGGAAAATCCTCCGGCGGCAACGCTTATTGGGCAAATGGAAGTTGAATTTTTTGCCAACTGCCAGTGTTGTGGGCTGACGGAGGAGTGTACAGAGGCTTACATCGAGGGAGTCCGCCGTCGATTCGACGGAAAATGGATTTGCGGCCTGGCCACCTCCGGACCCGACGCCCCATCTGATAACGGCAATGAGACAGATCCTCCGCCGAGTTTAGACTCCCCAAGAGCCTTGAGGTCCAAGCGGACCAGTCGAACCTCCAGCGCAGACAAAATTGGCGGCCGGGTTCTTGGTTGA 2637 49.72 MEPYHEVSETPEQIILRWDSAAPDEVKDNMIFDSDREEIDRYLRAVDEIQRSMSSASILDDQNKVDSTMQIAMARLEDEFRHILSTHIIPIEVESLTDPSPSACSMSSCTSGVFEDVNDDEADSQEVHLNLSGSPSFGSSGRSSYRRTSSIREIDLIPSGAIIDLRSIAERMIAAGYLRECIQVYGSVRKSTFDSSFKRLGIEKLSIGDIQRLDWNELVTKIRRWIRAAKISLRILFSSEKRLCQQIFYGIGTAIEDACFMETVKGSVTQLFNFAEAISISRRSPEKLFKILDLHDALTDLIPDIDVIFESKSAEYIRIQAAEILLRLGEAVRGTLSEFENAVLREPSLHPVLGGTVHPLTRYVMNYVSLISEYQVALEELIVSKPSTGSRNSADMDEFAEVEGKTPLALHLIWSIVILQLNLEGKSRQYKDPSLAHFFIMNNVHYIVEKIRGSPELRDIIGEVYLKRMTGKYRQAATNYERTTWVNVVYCLRNEGLNAGGSLSSAPSKSAIRERMKSFNAMFEEVHRTQSAWLIPDPLLKEELRISITEKLIPAYRSFLGLHGHHIESGRHPENYIKYSVEELENGILDFFEEEPNRVLFSWRQSFGFLYIAPPVYTHFTRARRIGRGEAEVDTIVTSQFSHPKLVFFKLVCILVLAVHFLSGCFGGIKYAFKAVKAAGITSIGVRGKDSVCVVTQNKVPDKLLYQSSVSHLVPITKYLGLLATGVTADARTLVQQARNEAAEIRFRYGYEMPVDVSAKWCSEISATTITEPMAVIAAPVPENPPAATLIGQMEVEFFANCQCCGLTEECTEAYIEGVRRRFDGKWICGLATSGPDAPSDNGNETDPPPSLDSPRALRSKRTSRTSSADKIGGRVLG 878
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 32956 43354 - CmaCh01G000100.1 Cma01g00010 285703
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00010 878 MobiDBLite consensus disorder prediction 834 878 - -
Cma01g00010 878 Gene3D Exocyst complex component Exo70 14 599 - -
Cma01g00010 878 SUPERFAMILY Cullin repeat-like 4 593 IPR016159 -
Cma01g00010 878 Pfam Proteasome subunit 680 771 IPR001353 GO:0005839|GO:0051603
Cma01g00010 878 Pfam Protein of unknown function (DUF1677) 800 833 IPR012876 -
Cma01g00010 878 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 662 777 IPR029055 -
Cma01g00010 878 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 7 599 - -
Cma01g00010 878 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 664 767 IPR029055 -
Cma01g00010 878 Pfam Exo70 exocyst complex subunit 224 589 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cma01g00010 878 PANTHER EXOCYST COMPLEX PROTEIN EXO70 7 599 IPR004140 GO:0000145|GO:0006887
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00010 Cma-Chr1:32956 Cma13g00803 Cma-Chr13:6823642 3.12E-146 dispersed
Cma14g01199 Cma-Chr14:9583679 Cma01g00010 Cma-Chr1:32956 0 transposed
Cma01g00010 Cma-Chr1:32956 Cma14g01197 Cma-Chr14:9571057 1.68E-50 wgd
Cma01g00010 Cma-Chr1:32956 Cma17g00679 Cma-Chr17:5684848 1.82E-48 wgd
Cma01g00010 Cma-Chr1:32956 Cma08g00806 Cma-Chr8:4867919 1.78E-36 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00010 K07195 - csv:101204229 967.607