Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00017 ATGCTTCATTCCATAGGAGCTGCACGACAAACTTGTAGCTTACTTGCTGTTACCTGCGGAAGATTGCCTAAAGTAAAATGCGAGGAGGATGTTGCCGAGCATAATTTGAAATACCCCTTTCCAGAATTGGTCTCTTCCGGACGATTGGAGGTCCAAGTTCTAACAAATCCAAGCAAGAATGAGTTTAGTAGAATTGTCGAATCATGTCAACCGAGCTTTGTCTACTTGCAAGGGGAGCAACTTGAGAATGACGAACTTGGGTCGTTGGTTTGGAATGGTGTTGATTTATCTCTTGAAGATTTATGTGGACTATTCAATACTGCATTACCAACCACCGTGTATTTAGAACTCCCAAATGGAGGCATAATAGCGGAGACTCTTCACTCTAAGGGAATTCCTTATGTCATATATTGGAACAACACATTTTCATGTTATGCTGCAGCTCATTTCCGCAATGCATTACTTTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACATGCTGCTTTTAGGCTTCAATGTATGGGGAGAAATTATGCTCTTCCTGGGAATGCTGACAATTTTAGGAGTGATCTAGAGCCTCAACTTATTGGAGAACCTCCAAAGATTATCGTAGAACCGCCTGAGCTAGATGCTGGTGCAGATGAAGATGCTTCTTTAGAAGCCCTCCCTGTTATAAGTGTACATGATAATAATGTGACCATGAGACTTCTCATCTGTGGATTGCCTTGCACACCGGATGCGTGCTTATTGAGATCATTGGAGGATGGCCTTAATGCCCTTTTGAATATTGAAATACGTGGGAGTAAACTTCAGGGAAAGTTCAGTGCTCCTCCGCCACCTCTTCAAGCAGAATCCTTTTCTCGCGGTGTTGTGACAATGCGATGTGATATAGTGACCTGTAGTTCGGCCCACATCTCAGTATTGGTGTCTGGTAGTGCTCATACTTGTTTTGATGATCAGCTGCTGGAAAAACATATCAAACATGAGATTATTGAAAATAGCCAATTGGTTCATGTCATGCATGATTGTGAGGGCAACAAACATCACATGCACAAGCCTCGAAAATCTGCTTCAGTTGCTTGTGGGGCAACAGTTTTTGAGGTTTCGATGAAGGTTCCCGCCTGGGCATCACAGGTCTTGAGGCAACTAGCACCTGATATGTCACATCGGAGTTTAGTTGCACTTGGCATTGGGGGAGTTCAGGGTTTTCCTGTTGCTTCCTTTGAGAAAGAGGATGCTGAGCGGTTGCTCTTCTTTTGTTCAAGGGACGAGAATGATAAACATTCAGATCAGTTGCTTGTCAGTGTACTGCCCAACTGGTTTAAACCACCTACTCCTAGTAGAAAGAGAGTGGAACCAAGCCAAGGAATAAGGAATGCTCTCTTACATGACAGTCTTGCATATGCAAATATCCCTTCAGTTAGAAGAGTAGGTAGAGAGGAGCCTGCACCAATGAATGGGTTTAAGGCACCCTTGCTCCCGGCTAGGAAAAGATTAAAAGTAGCCACCATGAGGCCTATTCCACTTGTGCATAGGAATAAAATGAAACTTTTCTCTGGATGGACTGAAGGAGATGGTAATAATGGAAGCCAGCCCAAGGCTAGTTTGCCCGTTGTTACCCCGTCCAAGCATGTAACTATAGGATCAACTTCTGCAACACAAAGAAAATCATTTTCAAGCTCATCTCAGTCTAAGCAGCAAATTATTCCCTTAAATCCACTACCTTTAAAGAAACATGGCTGTGGAAGAAATCCAGTTCAAGATTGCTCTGAGGAGGAGTTCTTGAAGGATGTTATGGAGTTTTTACTACTTCGAGGACATTCACGACTTATTCCTCAAGGTGGAGTTGAGGAGTTCCCAGATGCCGTACTCAATGGGAAGCGTCTTGACCTCTATAACTTGTATAAGGAGGTGGTCACCCGAGGAGGCTTTCATGTTGGCAATGGCATCAATTGGAAGGGGCAGATCTTCTCTAAGATGCACAATTACACAATGACCAATAGAATGACTGGTGTTGGAAATACATTGAAAAGACATTATGAGACTTACCTTCTAGAATATGAATTGGCTCATGATGATGTAGATGGAGAATGTTGCCTTTTGTGTCACAGCAACATCACTTTCTTACCATGGGATTTGCATCTGTTCAATAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGTATTTGTGGTGAATGGGCCCATTTTGGGTGCGACCGGAGGCAGGGTCTTGGTGCATTTAAGGATTATGCCAAAACAGATGGGTTAGAGTATGTTTGTCCACATTGTAGCATTACAACTTACAAGAAGAAACCACATAGTTTAGCAAACGGGTCTCCGCAAGGAATAACAAATCCCCGTTCAGTTGGGAAGTTGAGGCATCATCAAGCCATGGCCCTTCCCTTCCTGCTCCACCATTTATACTTCTCACTCCGGCCTTCCCAATCACCGATGAGAGTTGGAGCAATGGCTAATACACAACCAGCAAAGCCCGAGCTGTGCAAGGAAGGAGGAGACAGAGACGAGATGCTGATGAAGGAGCTGGCTGATACATGGAAATGGAAGAGATGTCCGCATTGCAAAATTTATGTTGAGAAGATTGGAGGCTGCTTCCATTTTACTTGCAGGTGCGGATCAGCATTTTGCTACGGCTGTGGATCTAAGTGGGTTGATGGCCATAGTTGTTGTTTTATTTCTCAATGGCCACAAAATTTCCGTGCTTGCGCGTTTAATTGCATCATTCGTTTTATTATTGTTTGGCGGGAGGATGAGTATATGATACTATTCTATTCCGATGATCCTGTTGGAATTTTGGAGCACGTAAGAAGAATTTCGCTGCGATTGTTCTATTTCAGCCTTCAACAGTTTTTGAACTATCTTGGATCTGTTTCCCATGTTTTACTTATCCTTCGAGAGGCATTGCGAGCTGCAACGGTGAAATGTGACCTGAATATCAAAGAATTACTAGCAATTGAATCGGTTGCTGACTATGCATTGCATTGCTTGTTCCCGCAGTTCAGAGATAGCCTGCTTTGTTTTGCTGCATGCATCAACATCTTAAAACTAAAAATTTCACATTCTTGTGGAATGGCAGATAAATCATGTATCAAGCGGCTTCAGAAAGAATATAGGGCTCTTTGTAAAGAGCCTGTTTCACACATTGTTGCTCGTCCCTCTCCCAGTGATATTCTTGAGTGGCATTATGTTTTGGAGGGAAGTGAGGGGACTCCTTTTGCAGGTGGGTACTACCATGGAAAGATTAAATTTCCTCCAGAGTATCCATACAAACCTCCGGGAATCAGCATGATCACCCCAAATGGTCGGTTCATGACTCAGAAGAAAATTTGCTTATCTATGAGCGACTTTCACCCAGAAAGTTGGAATCCTATGTGGTCTGTCTCTAGCATTCTAACCGGGCTTCTTTCATTCATGATGGACAACAGTCCTACTACTGGCAGCGTGAATACTACTGCTGCTGAGAAGGAACGCTTGGCTAAGGCTTCTCTTGCATTCAATTGTAAAAACCCAACATTTAGAAAACTGTTTCCCGAATACGTGGAGAATTTCAATCAGCAGCAGCAATCGGAGCAGCTTGTTGCAGAACAGGTATCACCAAAGCCATCAGTGGAAGGAGAAGCTAGGAAACTAATTGAGAAGGTGAAGTCCATGGAAGGGAACATAAACAAAGCAGCAGATGGAGACCACATGAAAAGAAATCGGAAGCAGTCGTTCCCTACATGA 3762 43.51 MLHSIGAARQTCSLLAVTCGRLPKVKCEEDVAEHNLKYPFPELVSSGRLEVQVLTNPSKNEFSRIVESCQPSFVYLQGEQLENDELGSLVWNGVDLSLEDLCGLFNTALPTTVYLELPNGGIIAETLHSKGIPYVIYWNNTFSCYAAAHFRNALLSVVQSSSTHTWDAFQLAHAAFRLQCMGRNYALPGNADNFRSDLEPQLIGEPPKIIVEPPELDAGADEDASLEALPVISVHDNNVTMRLLICGLPCTPDACLLRSLEDGLNALLNIEIRGSKLQGKFSAPPPPLQAESFSRGVVTMRCDIVTCSSAHISVLVSGSAHTCFDDQLLEKHIKHEIIENSQLVHVMHDCEGNKHHMHKPRKSASVACGATVFEVSMKVPAWASQVLRQLAPDMSHRSLVALGIGGVQGFPVASFEKEDAERLLFFCSRDENDKHSDQLLVSVLPNWFKPPTPSRKRVEPSQGIRNALLHDSLAYANIPSVRRVGREEPAPMNGFKAPLLPARKRLKVATMRPIPLVHRNKMKLFSGWTEGDGNNGSQPKASLPVVTPSKHVTIGSTSATQRKSFSSSSQSKQQIIPLNPLPLKKHGCGRNPVQDCSEEEFLKDVMEFLLLRGHSRLIPQGGVEEFPDAVLNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSNITFLPWDLHLFNSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYKKKPHSLANGSPQGITNPRSVGKLRHHQAMALPFLLHHLYFSLRPSQSPMRVGAMANTQPAKPELCKEGGDRDEMLMKELADTWKWKRCPHCKIYVEKIGGCFHFTCRCGSAFCYGCGSKWVDGHSCCFISQWPQNFRACAFNCIIRFIIVWREDEYMILFYSDDPVGILEHVRRISLRLFYFSLQQFLNYLGSVSHVLLILREALRAATVKCDLNIKELLAIESVADYALHCLFPQFRDSLLCFAACINILKLKISHSCGMADKSCIKRLQKEYRALCKEPVSHIVARPSPSDILEWHYVLEGSEGTPFAGGYYHGKIKFPPEYPYKPPGISMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKERLAKASLAFNCKNPTFRKLFPEYVENFNQQQQSEQLVAEQVSPKPSVEGEARKLIEKVKSMEGNINKAADGDHMKRNRKQSFPT 1253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 66960 78751 + CmaCh01G000170.1 Cma01g00017 285710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00017 1253 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1041 1198 IPR000608 -
Cma01g00017 1253 SMART ARID_2 592 695 - -
Cma01g00017 1253 CDD ARID 597 695 - -
Cma01g00017 1253 Gene3D - 836 918 - -
Cma01g00017 1253 SUPERFAMILY ARID-like 595 710 IPR036431 GO:0003677
Cma01g00017 1253 MobiDBLite consensus disorder prediction 1231 1253 - -
Cma01g00017 1253 SMART ubc_7 1044 1198 - -
Cma01g00017 1253 ProSiteProfiles ARID domain profile. 595 699 IPR001606 GO:0003677
Cma01g00017 1253 Gene3D Ubiquitin Conjugating Enzyme 1032 1213 IPR016135 -
Cma01g00017 1253 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 1 785 IPR042293 -
Cma01g00017 1253 Pfam Ubiquitin-conjugating enzyme 1045 1167 IPR000608 -
Cma01g00017 1253 CDD PHD_ARID4_like 705 770 - -
Cma01g00017 1253 Pfam ARID/BRIGHT DNA binding domain 598 695 IPR001606 GO:0003677
Cma01g00017 1253 SUPERFAMILY RING/U-box 849 904 - -
Cma01g00017 1253 MobiDBLite consensus disorder prediction 1235 1253 - -
Cma01g00017 1253 SUPERFAMILY UBC-like 1042 1196 IPR016135 -
Cma01g00017 1253 CDD UBCc 1043 1193 IPR000608 -
Cma01g00017 1253 Gene3D - 589 705 IPR036431 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00017 Cma-Chr1:66960 Cma14g01215 Cma-Chr14:9687300 0 dispersed
Cma20g00468 Cma-Chr20:2263193 Cma01g00017 Cma-Chr1:66960 7.74E-12 dispersed
Cma01g00017 Cma-Chr1:66960 Cma14g01222 Cma-Chr14:9719090 1.53E-133 wgd
Cma01g00017 Cma-Chr1:66960 Cma17g00656 Cma-Chr17:5512746 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34212 PF00179 UQ_con 7.60E-19 CL0208 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00017 - - csv:101215769 1377.46