Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00017 ATGCTTCATTCCATAGGAGCTGCACGACAAACTTGTAGCTTACTTGCTGTTACCTGCGGAAGATTGCCTAAAGTAAAATGCGAGGAGGATGTTGCCGAGCATAATTTGAAATACCCCTTTCCAGAATTGGTCTCTTCCGGACGATTGGAGGTCCAAGTTCTAACAAATCCAAGCAAGAATGAGTTTAGTAGAATTGTCGAATCATGTCAACCGAGCTTTGTCTACTTGCAAGGGGAGCAACTTGAGAATGACGAACTTGGGTCGTTGGTTTGGAATGGTGTTGATTTATCTCTTGAAGATTTATGTGGACTATTCAATACTGCATTACCAACCACCGTGTATTTAGAACTCCCAAATGGAGGCATAATAGCGGAGACTCTTCACTCTAAGGGAATTCCTTATGTCATATATTGGAACAACACATTTTCATGTTATGCTGCAGCTCATTTCCGCAATGCATTACTTTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACATGCTGCTTTTAGGCTTCAATGTATGGGGAGAAATTATGCTCTTCCTGGGAATGCTGACAATTTTAGGAGTGATCTAGAGCCTCAACTTATTGGAGAACCTCCAAAGATTATCGTAGAACCGCCTGAGCTAGATGCTGGTGCAGATGAAGATGCTTCTTTAGAAGCCCTCCCTGTTATAAGTGTACATGATAATAATGTGACCATGAGACTTCTCATCTGTGGATTGCCTTGCACACCGGATGCGTGCTTATTGAGATCATTGGAGGATGGCCTTAATGCCCTTTTGAATATTGAAATACGTGGGAGTAAACTTCAGGGAAAGTTCAGTGCTCCTCCGCCACCTCTTCAAGCAGAATCCTTTTCTCGCGGTGTTGTGACAATGCGATGTGATATAGTGACCTGTAGTTCGGCCCACATCTCAGTATTGGTGTCTGGTAGTGCTCATACTTGTTTTGATGATCAGCTGCTGGAAAAACATATCAAACATGAGATTATTGAAAATAGCCAATTGGTTCATGTCATGCATGATTGTGAGGGCAACAAACATCACATGCACAAGCCTCGAAAATCTGCTTCAGTTGCTTGTGGGGCAACAGTTTTTGAGGTTTCGATGAAGGTTCCCGCCTGGGCATCACAGGTCTTGAGGCAACTAGCACCTGATATGTCACATCGGAGTTTAGTTGCACTTGGCATTGGGGGAGTTCAGGGTTTTCCTGTTGCTTCCTTTGAGAAAGAGGATGCTGAGCGGTTGCTCTTCTTTTGTTCAAGGGACGAGAATGATAAACATTCAGATCAGTTGCTTGTCAGTGTACTGCCCAACTGGTTTAAACCACCTACTCCTAGTAGAAAGAGAGTGGAACCAAGCCAAGGAATAAGGAATGCTCTCTTACATGACAGTCTTGCATATGCAAATATCCCTTCAGTTAGAAGAGTAGGTAGAGAGGAGCCTGCACCAATGAATGGGTTTAAGGCACCCTTGCTCCCGGCTAGGAAAAGATTAAAAGTAGCCACCATGAGGCCTATTCCACTTGTGCATAGGAATAAAATGAAACTTTTCTCTGGATGGACTGAAGGAGATGGTAATAATGGAAGCCAGCCCAAGGCTAGTTTGCCCGTTGTTACCCCGTCCAAGCATGTAACTATAGGATCAACTTCTGCAACACAAAGAAAATCATTTTCAAGCTCATCTCAGTCTAAGCAGCAAATTATTCCCTTAAATCCACTACCTTTAAAGAAACATGGCTGTGGAAGAAATCCAGTTCAAGATTGCTCTGAGGAGGAGTTCTTGAAGGATGTTATGGAGTTTTTACTACTTCGAGGACATTCACGACTTATTCCTCAAGGTGGAGTTGAGGAGTTCCCAGATGCCGTACTCAATGGGAAGCGTCTTGACCTCTATAACTTGTATAAGGAGGTGGTCACCCGAGGAGGCTTTCATGTTGGCAATGGCATCAATTGGAAGGGGCAGATCTTCTCTAAGATGCACAATTACACAATGACCAATAGAATGACTGGTGTTGGAAATACATTGAAAAGACATTATGAGACTTACCTTCTAGAATATGAATTGGCTCATGATGATGTAGATGGAGAATGTTGCCTTTTGTGTCACAGCAACATCACTTTCTTACCATGGGATTTGCATCTGTTCAATAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGTATTTGTGGTGAATGGGCCCATTTTGGGTGCGACCGGAGGCAGGGTCTTGGTGCATTTAAGGATTATGCCAAAACAGATGGGTTAGAGTATGTTTGTCCACATTGTAGCATTACAACTTACAAGAAGAAACCACATAGTTTAGCAAACGGGTCTCCGCAAGGAATAACAAATCCCCGTTCAGTTGGGAAGTTGAGGCATCATCAAGCCATGGCCCTTCCCTTCCTGCTCCACCATTTATACTTCTCACTCCGGCCTTCCCAATCACCGATGAGAGTTGGAGCAATGGCTAATACACAACCAGCAAAGCCCGAGCTGTGCAAGGAAGGAGGAGACAGAGACGAGATGCTGATGAAGGAGCTGGCTGATACATGGAAATGGAAGAGATGTCCGCATTGCAAAATTTATGTTGAGAAGATTGGAGGCTGCTTCCATTTTACTTGCAGGTGCGGATCAGCATTTTGCTACGGCTGTGGATCTAAGTGGGTTGATGGCCATAGTTGTTGTTTTATTTCTCAATGGCCACAAAATTTCCGTGCTTGCGCGTTTAATTGCATCATTCGTTTTATTATTGTTTGGCGGGAGGATGAGTATATGATACTATTCTATTCCGATGATCCTGTTGGAATTTTGGAGCACGTAAGAAGAATTTCGCTGCGATTGTTCTATTTCAGCCTTCAACAGTTTTTGAACTATCTTGGATCTGTTTCCCATGTTTTACTTATCCTTCGAGAGGCATTGCGAGCTGCAACGGTGAAATGTGACCTGAATATCAAAGAATTACTAGCAATTGAATCGGTTGCTGACTATGCATTGCATTGCTTGTTCCCGCAGTTCAGAGATAGCCTGCTTTGTTTTGCTGCATGCATCAACATCTTAAAACTAAAAATTTCACATTCTTGTGGAATGGCAGATAAATCATGTATCAAGCGGCTTCAGAAAGAATATAGGGCTCTTTGTAAAGAGCCTGTTTCACACATTGTTGCTCGTCCCTCTCCCAGTGATATTCTTGAGTGGCATTATGTTTTGGAGGGAAGTGAGGGGACTCCTTTTGCAGGTGGGTACTACCATGGAAAGATTAAATTTCCTCCAGAGTATCCATACAAACCTCCGGGAATCAGCATGATCACCCCAAATGGTCGGTTCATGACTCAGAAGAAAATTTGCTTATCTATGAGCGACTTTCACCCAGAAAGTTGGAATCCTATGTGGTCTGTCTCTAGCATTCTAACCGGGCTTCTTTCATTCATGATGGACAACAGTCCTACTACTGGCAGCGTGAATACTACTGCTGCTGAGAAGGAACGCTTGGCTAAGGCTTCTCTTGCATTCAATTGTAAAAACCCAACATTTAGAAAACTGTTTCCCGAATACGTGGAGAATTTCAATCAGCAGCAGCAATCGGAGCAGCTTGTTGCAGAACAGGTATCACCAAAGCCATCAGTGGAAGGAGAAGCTAGGAAACTAATTGAGAAGGTGAAGTCCATGGAAGGGAACATAAACAAAGCAGCAGATGGAGACCACATGAAAAGAAATCGGAAGCAGTCGTTCCCTACATGA 3762 43.51 MLHSIGAARQTCSLLAVTCGRLPKVKCEEDVAEHNLKYPFPELVSSGRLEVQVLTNPSKNEFSRIVESCQPSFVYLQGEQLENDELGSLVWNGVDLSLEDLCGLFNTALPTTVYLELPNGGIIAETLHSKGIPYVIYWNNTFSCYAAAHFRNALLSVVQSSSTHTWDAFQLAHAAFRLQCMGRNYALPGNADNFRSDLEPQLIGEPPKIIVEPPELDAGADEDASLEALPVISVHDNNVTMRLLICGLPCTPDACLLRSLEDGLNALLNIEIRGSKLQGKFSAPPPPLQAESFSRGVVTMRCDIVTCSSAHISVLVSGSAHTCFDDQLLEKHIKHEIIENSQLVHVMHDCEGNKHHMHKPRKSASVACGATVFEVSMKVPAWASQVLRQLAPDMSHRSLVALGIGGVQGFPVASFEKEDAERLLFFCSRDENDKHSDQLLVSVLPNWFKPPTPSRKRVEPSQGIRNALLHDSLAYANIPSVRRVGREEPAPMNGFKAPLLPARKRLKVATMRPIPLVHRNKMKLFSGWTEGDGNNGSQPKASLPVVTPSKHVTIGSTSATQRKSFSSSSQSKQQIIPLNPLPLKKHGCGRNPVQDCSEEEFLKDVMEFLLLRGHSRLIPQGGVEEFPDAVLNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSNITFLPWDLHLFNSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYKKKPHSLANGSPQGITNPRSVGKLRHHQAMALPFLLHHLYFSLRPSQSPMRVGAMANTQPAKPELCKEGGDRDEMLMKELADTWKWKRCPHCKIYVEKIGGCFHFTCRCGSAFCYGCGSKWVDGHSCCFISQWPQNFRACAFNCIIRFIIVWREDEYMILFYSDDPVGILEHVRRISLRLFYFSLQQFLNYLGSVSHVLLILREALRAATVKCDLNIKELLAIESVADYALHCLFPQFRDSLLCFAACINILKLKISHSCGMADKSCIKRLQKEYRALCKEPVSHIVARPSPSDILEWHYVLEGSEGTPFAGGYYHGKIKFPPEYPYKPPGISMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKERLAKASLAFNCKNPTFRKLFPEYVENFNQQQQSEQLVAEQVSPKPSVEGEARKLIEKVKSMEGNINKAADGDHMKRNRKQSFPT 1253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 66960 78751 + CmaCh01G000170.1 Cma01g00017 285710

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00017 1253 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1041 1198 IPR000608 -
Cma01g00017 1253 SMART ARID_2 592 695 - -
Cma01g00017 1253 CDD ARID 597 695 - -
Cma01g00017 1253 Gene3D - 836 918 - -
Cma01g00017 1253 SUPERFAMILY ARID-like 595 710 IPR036431 GO:0003677
Cma01g00017 1253 MobiDBLite consensus disorder prediction 1231 1253 - -
Cma01g00017 1253 SMART ubc_7 1044 1198 - -
Cma01g00017 1253 ProSiteProfiles ARID domain profile. 595 699 IPR001606 GO:0003677
Cma01g00017 1253 Gene3D Ubiquitin Conjugating Enzyme 1032 1213 IPR016135 -
Cma01g00017 1253 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 1 785 IPR042293 -
Cma01g00017 1253 Pfam Ubiquitin-conjugating enzyme 1045 1167 IPR000608 -
Cma01g00017 1253 CDD PHD_ARID4_like 705 770 - -
Cma01g00017 1253 Pfam ARID/BRIGHT DNA binding domain 598 695 IPR001606 GO:0003677
Cma01g00017 1253 SUPERFAMILY RING/U-box 849 904 - -
Cma01g00017 1253 MobiDBLite consensus disorder prediction 1235 1253 - -
Cma01g00017 1253 SUPERFAMILY UBC-like 1042 1196 IPR016135 -
Cma01g00017 1253 CDD UBCc 1043 1193 IPR000608 -
Cma01g00017 1253 Gene3D - 589 705 IPR036431 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00017 - - - csv:101215769 1377.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00017 Cma-Chr1:66960 Cma14g01215 Cma-Chr14:9687300 0 dispersed
Cma20g00468 Cma-Chr20:2263193 Cma01g00017 Cma-Chr1:66960 7.74E-12 dispersed
Cma01g00017 Cma-Chr1:66960 Cma14g01222 Cma-Chr14:9719090 1.53E-133 wgd
Cma01g00017 Cma-Chr1:66960 Cma17g00656 Cma-Chr17:5512746 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g14 . . Bda04g00952 Bda10g00894 . Bpe10g00719 . . . . Cma01g00017 . Car01g00014 Car14g01076 Sed06g2285 . . Bhi01g02824 Tan04g2835 Cmetu04g1595 Lac12g2507 . . . . . . . . . . . . . . . . . . . . . . . . Bma09g00999 Bma15g00303 . Cmo01g00021 . . . . . Cpe02g01754 . . . . . . . . . . . . . . . . Csa03g02799 . Cme04g01404
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma17g00095 . 1 358 ARID Transcription Factor Family AT1G04880 56.8 2.5e-106 383.3
Cma08g01025 . 60 399 ARID Transcription Factor Family AT1G04880 60.3 1.2e-105 380.9
Cma01g02043 . 141 420 ARID Transcription Factor Family AT1G20910 67.5 2.2e-103 373.2
Cma16g01291 . 163 432 ARID Transcription Factor Family AT1G20910 60.3 2.7e-88 323.2
Cma09g00079 CST 16 315 ARID Transcription Factor Family AT1G76110 67.0 1.3e-112 403.7
Cma01g01993 CST 16 312 ARID Transcription Factor Family AT1G76110 65.3 3.6e-110 395.6
Cma01g02043 . 140 450 ARID Transcription Factor Family AT1G76510 72.8 1.6e-126 450.3
Cma16g01291 . 154 462 ARID Transcription Factor Family AT1G76510 61.6 8.2e-107 384.8
Cma01g00017 . 1 785 ARID Transcription Factor Family AT3G43240 58.4 6.1e-259 891.0
Cma14g01215 . 1 782 ARID Transcription Factor Family AT3G43240 57.9 6.1e-259 891.0
Cma17g00656 . 2 771 ARID Transcription Factor Family AT3G43240 56.9 1.3e-253 873.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0027933 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34212 PF00179 UQ_con 7.60E-19 CL0208 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g00017 Cma_Chr01 FPKM 8.954576 10.418907 9.263971 9.989549 9.794428 9.734486 10.509236 15.688528 14.554062 16.728416