Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g00022 | ATGGGATCGATAGAGGAGGGAACAAATTACCTATCTGACGAAGATATTCCATTGAAGGGAACTCCAGTTGCGAAAAACTTATCGCATAGCTTTGACTGTGAGACGGTTCATGTGCGTTCCTCCCCAGATGATAAAAGATGGTGGAAGACTAACAACATTCGTTTTAGACCTCTTGAAAGTGCTAAAATAGTGTTGATTAAAGCAAAGATCAACTTGTTACTTCCTTTTGGTCCTTTGGCAATCCTGCTACATTATTTAACTGGAAAGCATGGTTTGGTCTTCTTTTTCACTTTACTTGGAATTACACCTTTGGCAGAACGTCTTGGTTATGCAACAGAGCAGCTTGCTTCCTATACTGGTCCAACAGTTGGTGGTCTTTTGAATGCAACATTTGGAAATGCAACCGAAATGATTATATCGATTTATGCATTAAAGAGTGGGATGATTAGGGTTGTTCAACAGTCGTTATTGGGATCAATCTTGTCGAATATGCTCCTAGTGCTTGGTTGCGCTTTCTTCACTGGTGGGATTGTTCATCATAAGAATGTGCAGACTTTCAATAAGGGTACTGCTGTTGTGAATTCAGGATTGTTGTTAATGGCTGTTATGGGAACAACGTTTCCGGCTGTGCTTCATTTCACCCACACAGAACTTCATTCTGGAGAGTCAGCATTGTCTCTTTCAAGATTTAGCAGTTGTATAATGTTAATTGCATATGCAAGCTTCCTTTTCTTTCAACTAAAAAGTCAGCACAATCTCTATGGTTCTCTTGATGAGGAAGGTGATGGTGAAGTTGAGGAGGATCCTGAGATTTATGCTTGGGAAGCAATTGGGTGGCTTGCTATCTTGACTGTATGGGTATCGATTTTATCTGGATACCTTGTTGATGCTATTGAGGGAGCATCTGAATCATTACATTTGCCAGTGGCTTTTATTAGTGTAATTCTGTTGCCGATAGTTGGAAATGCTGCTGAACATGCAAGTGCAATCATGTTTGCCATGAAGGATAAGCTTAACATCACCCTTGGAGTTGCTATTGGATCATCAACACAGATATCCATGTTTGTGATCCCATTTTGCGTCGTTGTTGGATGGTGTATGGGAATACCAATGGACTTGAACTTTAAACTCTTTGAGACTGCAACTCTGTTTATAACTGTGCTAGTGGTGGCCTTTATGTTGCAGATGATGATTAACCCTGGAAGCAAGTTGGTCCTGGAACTTTACTGCAAGCTGAAGTTCTGCATTGTATTAATCCTCAAACCACCATTGCTTCACTTCGTTGGAAGCTGCAAACATAAGAGGACTCACAGAAATGGTTTGGACATCAGATGGAGTTTGGTTTCGTTAGTTGAACTGTGCTATAATATGACAGTTGATCTTTTCTCCTCATTTGTCATCTTCTTCCTTAGCTTGTTTATCATAGGCTTCAGCTGTAATCTATATTCATTAATTTTCGTTGTTTTCTGTGAGGAGATGAAAGAATCTGATATTGATGTGGAAGAAAGGAGCTCATTATTATATCAATGTCTTGACAGTCGCCAAGGCAGAGAGGAGCAAGTGACTGAGAGAGAAATGGTGAAGAAATGGAGTTGGGGAGAGGCGTTGCTGCTCATCAATATCTGCATTTTGGGATGGAGGGCCAGTTTTATCTATGGAGCTACGGATCCAGGAGATGTTACTCATACACATAAATATCTTAGTAGCATTATTTCTGCAGTGTCTGCTCTAAATGCCATGTTTACTAGTTTAAACTCGCCTCCAATTCTAACCCTATGGACTGCAAGTGGTGGAGATCCGTGTGGTCAGCTTTGGAAAGCCGTTACTTGCTCGGGCTCACGGGTCACAGAAATTTCACTGTCTGGTTTAGGACTTTCTGGATCACTGGGATACCAGCTCTCAAGTTTGACATCTCTAATTAATCTAGACGTGAGTATCAACAATCTTGGACCTGACATACCTTATCAATTCCCTCAAAGCTTGCAAAAACTAAACCTTGGATGTAATAACTTCAGTGGAAGCCTTCCATATTCTATTTCTCAAATGAGTTTGCTTATATCCTTGAACATCAGCCACAATCAGCTTCGGGATCAAGTCAACAATATGTTCTGGAATCTTTCTTCCATGTCCATGTTGGATGTCTCTTTCAATTTTCTGTCAGGTACTCTCCCCCAGAGTTTTAGCAACCTTACCAGTATGAACTCAATGTTTCTGCAAAACAACCAGTTCAGTGGCACTATTGATGTTCTTGCAAATCTTCCTCTCCAAAACTTGAATGTCGAGAACAACAATTTTACTGGTTGGGTTCCTGACCGATTGAAGAACATAAATATTCAGGATGGTGGCAATTCTTGGAGCTATGGGCTTGCACCCCCACCTCCGCCCGGTACATCTCCAGCCTACCACAATTACAGATATCACAAGCCTGGGAACAATTACAGCCCACTGAGTAGTGGTGCTGCTGATGGAGATAGCAGTAGATCAGGAATCAGTGGTGGTGCCATTGCTGGAATTCTTATATCTCTGCTAGTTGTAGGAGCAGTGCTAGCATATCTCTTTGTAAAGAGAAGGCCCAAGAAGTCATCCACAGACATAGAAAAACTAAAGATTAGGAACCAGCTTAGCGTATCTACTGCTTCAAATGCAGCGCAAGATTCATTGGCAGAAATGAAGCTTATTCATACTTCATCCTCATTTGATACAAAAGCATTGAGTTCTCCTGCTTCAGTCAATCTAAGACCCCCACCTATGGACAGTCATAAATCGTTTGATGACAATGATACATCAACGATACCTGCTGCGAAGAAGGCCAATGTTGCTCCTGAGATAAGTGTGAAATCATATTCAATAGCAGATCTGCAATTGGCTACAGGCAGTTTCAATGTAGAAAATCTTCTTGGTGAGGGATCATTTGGACGTGTTTTTCGGGCTCAGTTTGACGATGGGAAGGTTCTTGCCGTGAAGAAAATAGATTCAGCTGCCTTCCCTAGAGAGTTGTTGGAAGATTTCACAGAGATAGTTGCTAATGTATCACAGTTGCATCATCCTAATGTAACCGAGCTAATGGGTTATTGCTCAGAGCATGGTCTGCATTTGCTACTTTATGAGTTCCATAAGAATGGCTCACTTCATGACTTCTTGCATATATCAGATGAATATAGCAAGCCACTGACTTGGAACTCACGTGTCAAGATTGCTCTGGGAACGGCCCGTGCACTAGAGTACCTACATGAAGTTTGTGCACCATCAGTTGTACACAGAAATATAAAGTCAGCTAATATCTTACTGGATGCCGAACTTAATCCTCATCTTTCCGATTGTGGCCTGGCTAGCTTTATTACCAACCTAGATCATGCATTAGATCAGCAAGCAGGATCTGGATATAGTGCCCCGGAGGTTACCATGTCTGGTCAATATACATTAAAAAGCGACATATACAGCTTCGGAGTGGTGATGTTAGAACTTCTATGTGGACGTAAGCCGTTTGATAGTTCAAGGCCAAGAGCTGAGCAATCCTTGGTTCGATGGGCAACGCCTCAGCTCCATGACATTGATGCCTTGACGAAAATGGTTGATCCTGCACTTAAAGGTCTTTACCCAGTCAAGTCTCTCTCGAGATTTGCAGATGTTGTGGCTCTCTGCGTCCAGCCCGAGCCCGAATTCAGACCTCCTATGTCAGAGGTGGTGGAAGCATTGGTTCGGCTTGTGCAGAGATCCAACATGAGCAGAAGAACATTTGGAAGTGATCACGGATCATCGTTTAGAATTGATGAACCTGATGCACATGAGACATCTTAA | 3798 | 42.0 | MGSIEEGTNYLSDEDIPLKGTPVAKNLSHSFDCETVHVRSSPDDKRWWKTNNIRFRPLESAKIVLIKAKINLLLPFGPLAILLHYLTGKHGLVFFFTLLGITPLAERLGYATEQLASYTGPTVGGLLNATFGNATEMIISIYALKSGMIRVVQQSLLGSILSNMLLVLGCAFFTGGIVHHKNVQTFNKGTAVVNSGLLLMAVMGTTFPAVLHFTHTELHSGESALSLSRFSSCIMLIAYASFLFFQLKSQHNLYGSLDEEGDGEVEEDPEIYAWEAIGWLAILTVWVSILSGYLVDAIEGASESLHLPVAFISVILLPIVGNAAEHASAIMFAMKDKLNITLGVAIGSSTQISMFVIPFCVVVGWCMGIPMDLNFKLFETATLFITVLVVAFMLQMMINPGSKLVLELYCKLKFCIVLILKPPLLHFVGSCKHKRTHRNGLDIRWSLVSLVELCYNMTVDLFSSFVIFFLSLFIIGFSCNLYSLIFVVFCEEMKESDIDVEERSSLLYQCLDSRQGREEQVTEREMVKKWSWGEALLLINICILGWRASFIYGATDPGDVTHTHKYLSSIISAVSALNAMFTSLNSPPILTLWTASGGDPCGQLWKAVTCSGSRVTEISLSGLGLSGSLGYQLSSLTSLINLDVSINNLGPDIPYQFPQSLQKLNLGCNNFSGSLPYSISQMSLLISLNISHNQLRDQVNNMFWNLSSMSMLDVSFNFLSGTLPQSFSNLTSMNSMFLQNNQFSGTIDVLANLPLQNLNVENNNFTGWVPDRLKNINIQDGGNSWSYGLAPPPPPGTSPAYHNYRYHKPGNNYSPLSSGAADGDSSRSGISGGAIAGILISLLVVGAVLAYLFVKRRPKKSSTDIEKLKIRNQLSVSTASNAAQDSLAEMKLIHTSSSFDTKALSSPASVNLRPPPMDSHKSFDDNDTSTIPAAKKANVAPEISVKSYSIADLQLATGSFNVENLLGEGSFGRVFRAQFDDGKVLAVKKIDSAAFPRELLEDFTEIVANVSQLHHPNVTELMGYCSEHGLHLLLYEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYLHEVCAPSVVHRNIKSANILLDAELNPHLSDCGLASFITNLDHALDQQAGSGYSAPEVTMSGQYTLKSDIYSFGVVMLELLCGRKPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDPALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRIDEPDAHETS | 1265 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 86530 | 98587 | - | CmaCh01G000220.1 | Cma01g00022 | 285715 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g00022 | 1265 | Pfam | Protein tyrosine and serine/threonine kinase | 962 | 1232 | IPR001245 | GO:0004672|GO:0006468 | |
Cma01g00022 | 1265 | Gene3D | Phosphorylase Kinase; domain 1 | 924 | 1037 | - | - | |
Cma01g00022 | 1265 | SUPERFAMILY | Protein kinase-like (PK-like) | 942 | 1232 | IPR011009 | - | |
Cma01g00022 | 1265 | TIGRFAM | caca2: calcium/proton exchanger | 60 | 395 | - | - | |
Cma01g00022 | 1265 | MobiDBLite | consensus disorder prediction | 905 | 928 | - | - | |
Cma01g00022 | 1265 | Gene3D | - | 121 | 260 | IPR044880 | - | |
Cma01g00022 | 1265 | Gene3D | - | 264 | 420 | IPR044880 | - | |
Cma01g00022 | 1265 | Pfam | Sodium/calcium exchanger protein | 92 | 247 | IPR004837 | GO:0016021|GO:0055085 | |
Cma01g00022 | 1265 | Pfam | Sodium/calcium exchanger protein | 277 | 398 | IPR004837 | GO:0016021|GO:0055085 | |
Cma01g00022 | 1265 | CDD | STKc_IRAK | 966 | 1235 | - | - | |
Cma01g00022 | 1265 | Gene3D | Ribonuclease Inhibitor | 572 | 789 | IPR032675 | - | |
Cma01g00022 | 1265 | MobiDBLite | consensus disorder prediction | 1250 | 1265 | - | - | |
Cma01g00022 | 1265 | Pfam | Leucine rich repeat | 660 | 717 | IPR001611 | GO:0005515 | |
Cma01g00022 | 1265 | PANTHER | PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 | 564 | 1259 | - | - | |
Cma01g00022 | 1265 | TIGRFAM | cax: calcium/proton exchanger | 73 | 393 | IPR004798 | GO:0006816|GO:0015369 | |
Cma01g00022 | 1265 | PANTHER | OS01G0253100 PROTEIN | 564 | 1259 | IPR045271 | GO:0004714|GO:0006468 | |
Cma01g00022 | 1265 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1039 | 1254 | - | - | |
Cma01g00022 | 1265 | ProSiteProfiles | Protein kinase domain profile. | 960 | 1235 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma01g00022 | 1265 | SUPERFAMILY | L domain-like | 575 | 775 | - | - | |
Cma01g00022 | 1265 | ProSitePatterns | Protein kinases ATP-binding region signature. | 966 | 989 | IPR017441 | GO:0005524 | |
Cma01g00022 | 1265 | MobiDBLite | consensus disorder prediction | 1244 | 1265 | - | - | |
Cma01g00022 | 1265 | Pfam | Leucine rich repeat N-terminal domain | 574 | 611 | IPR013210 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g00022 | Cma08g00837 | CCT | |
Cma01g00022 | Cma17g00644 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00022 | Cma-Chr1:86530 | Cma04g00965 | Cma-Chr4:4949158 | 0 | dispersed | |
Cma20g00699 | Cma-Chr20:3216684 | Cma01g00022 | Cma-Chr1:86530 | 1.21E-154 | dispersed | |
Cma14g01228 | Cma-Chr14:9748614 | Cma01g00022 | Cma-Chr1:86530 | 0 | transposed | |
Cma01g00022 | Cma-Chr1:86530 | Cma14g01226 | Cma-Chr14:9734658 | 0 | wgd | |
Cma01g00022 | Cma-Chr1:86530 | Cma17g00644 | Cma-Chr17:5444729 | 0 | wgd | |
Cma01g00022 | Cma-Chr1:86530 | Cma08g00837 | Cma-Chr8:5074451 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68234 | PF07714 | PK_Tyr_Ser-Thr | 4.10E-41 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g00022 | - | - | csv:101208239 | 1201.42 |