Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00022 ATGGGATCGATAGAGGAGGGAACAAATTACCTATCTGACGAAGATATTCCATTGAAGGGAACTCCAGTTGCGAAAAACTTATCGCATAGCTTTGACTGTGAGACGGTTCATGTGCGTTCCTCCCCAGATGATAAAAGATGGTGGAAGACTAACAACATTCGTTTTAGACCTCTTGAAAGTGCTAAAATAGTGTTGATTAAAGCAAAGATCAACTTGTTACTTCCTTTTGGTCCTTTGGCAATCCTGCTACATTATTTAACTGGAAAGCATGGTTTGGTCTTCTTTTTCACTTTACTTGGAATTACACCTTTGGCAGAACGTCTTGGTTATGCAACAGAGCAGCTTGCTTCCTATACTGGTCCAACAGTTGGTGGTCTTTTGAATGCAACATTTGGAAATGCAACCGAAATGATTATATCGATTTATGCATTAAAGAGTGGGATGATTAGGGTTGTTCAACAGTCGTTATTGGGATCAATCTTGTCGAATATGCTCCTAGTGCTTGGTTGCGCTTTCTTCACTGGTGGGATTGTTCATCATAAGAATGTGCAGACTTTCAATAAGGGTACTGCTGTTGTGAATTCAGGATTGTTGTTAATGGCTGTTATGGGAACAACGTTTCCGGCTGTGCTTCATTTCACCCACACAGAACTTCATTCTGGAGAGTCAGCATTGTCTCTTTCAAGATTTAGCAGTTGTATAATGTTAATTGCATATGCAAGCTTCCTTTTCTTTCAACTAAAAAGTCAGCACAATCTCTATGGTTCTCTTGATGAGGAAGGTGATGGTGAAGTTGAGGAGGATCCTGAGATTTATGCTTGGGAAGCAATTGGGTGGCTTGCTATCTTGACTGTATGGGTATCGATTTTATCTGGATACCTTGTTGATGCTATTGAGGGAGCATCTGAATCATTACATTTGCCAGTGGCTTTTATTAGTGTAATTCTGTTGCCGATAGTTGGAAATGCTGCTGAACATGCAAGTGCAATCATGTTTGCCATGAAGGATAAGCTTAACATCACCCTTGGAGTTGCTATTGGATCATCAACACAGATATCCATGTTTGTGATCCCATTTTGCGTCGTTGTTGGATGGTGTATGGGAATACCAATGGACTTGAACTTTAAACTCTTTGAGACTGCAACTCTGTTTATAACTGTGCTAGTGGTGGCCTTTATGTTGCAGATGATGATTAACCCTGGAAGCAAGTTGGTCCTGGAACTTTACTGCAAGCTGAAGTTCTGCATTGTATTAATCCTCAAACCACCATTGCTTCACTTCGTTGGAAGCTGCAAACATAAGAGGACTCACAGAAATGGTTTGGACATCAGATGGAGTTTGGTTTCGTTAGTTGAACTGTGCTATAATATGACAGTTGATCTTTTCTCCTCATTTGTCATCTTCTTCCTTAGCTTGTTTATCATAGGCTTCAGCTGTAATCTATATTCATTAATTTTCGTTGTTTTCTGTGAGGAGATGAAAGAATCTGATATTGATGTGGAAGAAAGGAGCTCATTATTATATCAATGTCTTGACAGTCGCCAAGGCAGAGAGGAGCAAGTGACTGAGAGAGAAATGGTGAAGAAATGGAGTTGGGGAGAGGCGTTGCTGCTCATCAATATCTGCATTTTGGGATGGAGGGCCAGTTTTATCTATGGAGCTACGGATCCAGGAGATGTTACTCATACACATAAATATCTTAGTAGCATTATTTCTGCAGTGTCTGCTCTAAATGCCATGTTTACTAGTTTAAACTCGCCTCCAATTCTAACCCTATGGACTGCAAGTGGTGGAGATCCGTGTGGTCAGCTTTGGAAAGCCGTTACTTGCTCGGGCTCACGGGTCACAGAAATTTCACTGTCTGGTTTAGGACTTTCTGGATCACTGGGATACCAGCTCTCAAGTTTGACATCTCTAATTAATCTAGACGTGAGTATCAACAATCTTGGACCTGACATACCTTATCAATTCCCTCAAAGCTTGCAAAAACTAAACCTTGGATGTAATAACTTCAGTGGAAGCCTTCCATATTCTATTTCTCAAATGAGTTTGCTTATATCCTTGAACATCAGCCACAATCAGCTTCGGGATCAAGTCAACAATATGTTCTGGAATCTTTCTTCCATGTCCATGTTGGATGTCTCTTTCAATTTTCTGTCAGGTACTCTCCCCCAGAGTTTTAGCAACCTTACCAGTATGAACTCAATGTTTCTGCAAAACAACCAGTTCAGTGGCACTATTGATGTTCTTGCAAATCTTCCTCTCCAAAACTTGAATGTCGAGAACAACAATTTTACTGGTTGGGTTCCTGACCGATTGAAGAACATAAATATTCAGGATGGTGGCAATTCTTGGAGCTATGGGCTTGCACCCCCACCTCCGCCCGGTACATCTCCAGCCTACCACAATTACAGATATCACAAGCCTGGGAACAATTACAGCCCACTGAGTAGTGGTGCTGCTGATGGAGATAGCAGTAGATCAGGAATCAGTGGTGGTGCCATTGCTGGAATTCTTATATCTCTGCTAGTTGTAGGAGCAGTGCTAGCATATCTCTTTGTAAAGAGAAGGCCCAAGAAGTCATCCACAGACATAGAAAAACTAAAGATTAGGAACCAGCTTAGCGTATCTACTGCTTCAAATGCAGCGCAAGATTCATTGGCAGAAATGAAGCTTATTCATACTTCATCCTCATTTGATACAAAAGCATTGAGTTCTCCTGCTTCAGTCAATCTAAGACCCCCACCTATGGACAGTCATAAATCGTTTGATGACAATGATACATCAACGATACCTGCTGCGAAGAAGGCCAATGTTGCTCCTGAGATAAGTGTGAAATCATATTCAATAGCAGATCTGCAATTGGCTACAGGCAGTTTCAATGTAGAAAATCTTCTTGGTGAGGGATCATTTGGACGTGTTTTTCGGGCTCAGTTTGACGATGGGAAGGTTCTTGCCGTGAAGAAAATAGATTCAGCTGCCTTCCCTAGAGAGTTGTTGGAAGATTTCACAGAGATAGTTGCTAATGTATCACAGTTGCATCATCCTAATGTAACCGAGCTAATGGGTTATTGCTCAGAGCATGGTCTGCATTTGCTACTTTATGAGTTCCATAAGAATGGCTCACTTCATGACTTCTTGCATATATCAGATGAATATAGCAAGCCACTGACTTGGAACTCACGTGTCAAGATTGCTCTGGGAACGGCCCGTGCACTAGAGTACCTACATGAAGTTTGTGCACCATCAGTTGTACACAGAAATATAAAGTCAGCTAATATCTTACTGGATGCCGAACTTAATCCTCATCTTTCCGATTGTGGCCTGGCTAGCTTTATTACCAACCTAGATCATGCATTAGATCAGCAAGCAGGATCTGGATATAGTGCCCCGGAGGTTACCATGTCTGGTCAATATACATTAAAAAGCGACATATACAGCTTCGGAGTGGTGATGTTAGAACTTCTATGTGGACGTAAGCCGTTTGATAGTTCAAGGCCAAGAGCTGAGCAATCCTTGGTTCGATGGGCAACGCCTCAGCTCCATGACATTGATGCCTTGACGAAAATGGTTGATCCTGCACTTAAAGGTCTTTACCCAGTCAAGTCTCTCTCGAGATTTGCAGATGTTGTGGCTCTCTGCGTCCAGCCCGAGCCCGAATTCAGACCTCCTATGTCAGAGGTGGTGGAAGCATTGGTTCGGCTTGTGCAGAGATCCAACATGAGCAGAAGAACATTTGGAAGTGATCACGGATCATCGTTTAGAATTGATGAACCTGATGCACATGAGACATCTTAA 3798 42.0 MGSIEEGTNYLSDEDIPLKGTPVAKNLSHSFDCETVHVRSSPDDKRWWKTNNIRFRPLESAKIVLIKAKINLLLPFGPLAILLHYLTGKHGLVFFFTLLGITPLAERLGYATEQLASYTGPTVGGLLNATFGNATEMIISIYALKSGMIRVVQQSLLGSILSNMLLVLGCAFFTGGIVHHKNVQTFNKGTAVVNSGLLLMAVMGTTFPAVLHFTHTELHSGESALSLSRFSSCIMLIAYASFLFFQLKSQHNLYGSLDEEGDGEVEEDPEIYAWEAIGWLAILTVWVSILSGYLVDAIEGASESLHLPVAFISVILLPIVGNAAEHASAIMFAMKDKLNITLGVAIGSSTQISMFVIPFCVVVGWCMGIPMDLNFKLFETATLFITVLVVAFMLQMMINPGSKLVLELYCKLKFCIVLILKPPLLHFVGSCKHKRTHRNGLDIRWSLVSLVELCYNMTVDLFSSFVIFFLSLFIIGFSCNLYSLIFVVFCEEMKESDIDVEERSSLLYQCLDSRQGREEQVTEREMVKKWSWGEALLLINICILGWRASFIYGATDPGDVTHTHKYLSSIISAVSALNAMFTSLNSPPILTLWTASGGDPCGQLWKAVTCSGSRVTEISLSGLGLSGSLGYQLSSLTSLINLDVSINNLGPDIPYQFPQSLQKLNLGCNNFSGSLPYSISQMSLLISLNISHNQLRDQVNNMFWNLSSMSMLDVSFNFLSGTLPQSFSNLTSMNSMFLQNNQFSGTIDVLANLPLQNLNVENNNFTGWVPDRLKNINIQDGGNSWSYGLAPPPPPGTSPAYHNYRYHKPGNNYSPLSSGAADGDSSRSGISGGAIAGILISLLVVGAVLAYLFVKRRPKKSSTDIEKLKIRNQLSVSTASNAAQDSLAEMKLIHTSSSFDTKALSSPASVNLRPPPMDSHKSFDDNDTSTIPAAKKANVAPEISVKSYSIADLQLATGSFNVENLLGEGSFGRVFRAQFDDGKVLAVKKIDSAAFPRELLEDFTEIVANVSQLHHPNVTELMGYCSEHGLHLLLYEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYLHEVCAPSVVHRNIKSANILLDAELNPHLSDCGLASFITNLDHALDQQAGSGYSAPEVTMSGQYTLKSDIYSFGVVMLELLCGRKPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDPALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRIDEPDAHETS 1265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 86530 98587 - CmaCh01G000220.1 Cma01g00022 285715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00022 1265 Pfam Protein tyrosine and serine/threonine kinase 962 1232 IPR001245 GO:0004672|GO:0006468
Cma01g00022 1265 Gene3D Phosphorylase Kinase; domain 1 924 1037 - -
Cma01g00022 1265 SUPERFAMILY Protein kinase-like (PK-like) 942 1232 IPR011009 -
Cma01g00022 1265 TIGRFAM caca2: calcium/proton exchanger 60 395 - -
Cma01g00022 1265 MobiDBLite consensus disorder prediction 905 928 - -
Cma01g00022 1265 Gene3D - 121 260 IPR044880 -
Cma01g00022 1265 Gene3D - 264 420 IPR044880 -
Cma01g00022 1265 Pfam Sodium/calcium exchanger protein 92 247 IPR004837 GO:0016021|GO:0055085
Cma01g00022 1265 Pfam Sodium/calcium exchanger protein 277 398 IPR004837 GO:0016021|GO:0055085
Cma01g00022 1265 CDD STKc_IRAK 966 1235 - -
Cma01g00022 1265 Gene3D Ribonuclease Inhibitor 572 789 IPR032675 -
Cma01g00022 1265 MobiDBLite consensus disorder prediction 1250 1265 - -
Cma01g00022 1265 Pfam Leucine rich repeat 660 717 IPR001611 GO:0005515
Cma01g00022 1265 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 564 1259 - -
Cma01g00022 1265 TIGRFAM cax: calcium/proton exchanger 73 393 IPR004798 GO:0006816|GO:0015369
Cma01g00022 1265 PANTHER OS01G0253100 PROTEIN 564 1259 IPR045271 GO:0004714|GO:0006468
Cma01g00022 1265 Gene3D Transferase(Phosphotransferase) domain 1 1039 1254 - -
Cma01g00022 1265 ProSiteProfiles Protein kinase domain profile. 960 1235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00022 1265 SUPERFAMILY L domain-like 575 775 - -
Cma01g00022 1265 ProSitePatterns Protein kinases ATP-binding region signature. 966 989 IPR017441 GO:0005524
Cma01g00022 1265 MobiDBLite consensus disorder prediction 1244 1265 - -
Cma01g00022 1265 Pfam Leucine rich repeat N-terminal domain 574 611 IPR013210 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00022 Cma08g00837 CCT
Cma01g00022 Cma17g00644 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00022 Cma-Chr1:86530 Cma04g00965 Cma-Chr4:4949158 0 dispersed
Cma20g00699 Cma-Chr20:3216684 Cma01g00022 Cma-Chr1:86530 1.21E-154 dispersed
Cma14g01228 Cma-Chr14:9748614 Cma01g00022 Cma-Chr1:86530 0 transposed
Cma01g00022 Cma-Chr1:86530 Cma14g01226 Cma-Chr14:9734658 0 wgd
Cma01g00022 Cma-Chr1:86530 Cma17g00644 Cma-Chr17:5444729 0 wgd
Cma01g00022 Cma-Chr1:86530 Cma08g00837 Cma-Chr8:5074451 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68234 PF07714 PK_Tyr_Ser-Thr 4.10E-41 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00022 - - csv:101208239 1201.42