Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00023 ATGAGACCGCTTCAGCCGCCGCAGGGTGTAAATCCGGCCACCGATCGTCCTCGTCGCCGCCCGAATCTAACCCTTCCTCTTCCGCAGCGGGACAATTCGTCTTTGGCTGTTCCTCTCCCTTTGCCTCCGACGTCTTCTAACGCCGCTCCTCCTCCTTCCACCAGTCAACTCCACAACGGCAACCGTCCACCGGAGCCTCAGCCACAGCCTCAGCCGCAGAAGCATCAGGTTTTCAGCCTCGCCGACTTTGAGCGAGTCAGTCGAATCGGAAGTGGATGCGGAGGCACCGTCTACAAAGTGATTCACCGTCCCACCGGCCGCGTCTATGCTCTGAAGGTCATTTATGGAAACCACGAGGACGCGGTTAGGCTTCAGATGTGCCGTGAGGTTGAGATCCTTCGCGACGTTGACAATCCCTATGTGGTCAAGTGCCACGATATGTTTGATCACAACGGCGAAATCCAGGTTCTCCTTGAATACATGGATCGAGGCTCCCTGGAAGGAACACACATCCCTCAAGAACATCATCTCTCCGATTTGGCTCGCCAGATTCTCAGCGGCCTCGCTTATCTCCATAGCCGCCGCATCGTACATCGCGACATCAAACCCTCGAATCTCCTAATTAATTCCCGGAGGCAGGTTAAGATCGCCGATTTCGGCGTCGGTCGAATCTTGGAACAGACGATGGATCCTTGCAATTCCTCCGTTGGAACTATTGCGTACATGAGCCCCGAGAGAATCAATTCCGATCTAAATCAGGGCCAGTACAATGGCTACGCAGGGGATATTTGGAGTTTTGGGGTTAGCATATTGGAATTCTACCTCGGACGGTTTCCTCTTGCTGTGGAGAGGCCTGGGGACTGGGCGAGCTTGATGTGTGCTATATGTATGGCTCAGCCACCGGAGGCGCCGCCCACCGCGTCGCCGGAGTTTCGCCATTTTATTGCCTGTTGTTTGCAGAGAGAAGCTCGGAAGAGATGGACTGCAGCTGCACTACTGGAACATGCGTTCATAGCGGGGAAAAATGGAGCGGCGAGTCAGTACCAGAATCAGCAAACTCATCACCAGAATCTTCGTCAACTATTACCTCCGCCGCCCCTTCGTCCTTCCAGCCTTTCTTGA 1122 54.55 MRPLQPPQGVNPATDRPRRRPNLTLPLPQRDNSSLAVPLPLPPTSSNAAPPPSTSQLHNGNRPPEPQPQPQPQKHQVFSLADFERVSRIGSGCGGTVYKVIHRPTGRVYALKVIYGNHEDAVRLQMCREVEILRDVDNPYVVKCHDMFDHNGEIQVLLEYMDRGSLEGTHIPQEHHLSDLARQILSGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYLGRFPLAVERPGDWASLMCAICMAQPPEAPPTASPEFRHFIACCLQREARKRWTAAALLEHAFIAGKNGAASQYQNQQTHHQNLRQLLPPPPLRPSSLS 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 99519 100640 - CmaCh01G000230.1 Cma01g00023 285716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00023 373 MobiDBLite consensus disorder prediction 348 373 - -
Cma01g00023 373 CDD PKc_MAPKK_plant_like 81 340 - -
Cma01g00023 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Cma01g00023 373 Gene3D Phosphorylase Kinase; domain 1 58 162 - -
Cma01g00023 373 Gene3D Transferase(Phosphotransferase) domain 1 165 363 - -
Cma01g00023 373 MobiDBLite consensus disorder prediction 1 75 - -
Cma01g00023 373 SUPERFAMILY Protein kinase-like (PK-like) 81 357 IPR011009 -
Cma01g00023 373 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 15 361 - -
Cma01g00023 373 Pfam Protein kinase domain 83 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00023 373 ProSiteProfiles Protein kinase domain profile. 83 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00023 373 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
Cma01g00023 373 SMART serkin_6 83 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00023 373 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 15 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00023 Cma-Chr1:99519 Cma13g00976 Cma-Chr13:7605521 3.27E-96 dispersed
Cma01g00023 Cma-Chr1:99519 Cma10g00741 Cma-Chr10:3371796 2.32E-65 wgd
Cma01g00023 Cma-Chr1:99519 Cma12g01322 Cma-Chr12:10107708 2.57E-59 wgd
Cma01g00023 Cma-Chr1:99519 Cma14g01229 Cma-Chr14:9753485 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68235 PF00069 Pkinase 2.40E-60 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00023 K13413 - csv:101219669 628.632