Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00025 ATGCGTTCACACTTGGGAGTGATTAAAGCGGCTGCAAGATTTGTGGGTTACGTTGCTATGCAGCTTGCTTCCCACCATTTCTTGCTACTGGTATGCTTCTCGTTCCCAATCTGTCTCGTTTCTGGTTTAACCTCCGATGGGTTGGCTTTATTGTCACTCCAAGCCCGCTGGACTACCGACACCCCTTTTATTGGGCCCGAAATTGGGAATTTGACCCACTTGCGTACCATTGATTTGATATCCAACACTTTTTCTGGTGCAATTCCTTATGGGATAGGCAACTGTAGCCATTTAGAGTTCTTGGATCTCTCCCTTAACCAATTTGGTGGACAAGTTCCTCATTCCTTAACGAACCTTAGGAACTTGACGTTTTTGAACCTCCATTCCAATGTTCTAACAGGTGCAATACCCGACTCCTTATTTCAAATTCTGAATTTGCAGTATGTGTATCTTAGTGAAAATAGTCTCAACGGTTCTATTCCTTCAAATGTGGGGAATTTGAAGCAGCTGTTGCATCTGTATTTGTATGGAAATCAGTTGTCTGGAACCGTACCTTCTTCCATAGGGAACTGTAGCCAATTACAGGATCTTTACTTGAACCAGAACCAGTTGGTGGGAGTGTTGCCCAATACTCTTAACCATCTTCATAATCTTGTGAATTTGGGTGTCAGCCACAACAATCTTGAGGGTCCAATTCCTTTGGGCTCCGGCAATTGCCAGAGTTTAGAATATATAGATTTGTCATTCAATGGTTACAGTGGAGGTATACCTGCTGGGCTGGGCAACTGCAGTGGCCTAAGAACCTTGCTCGTTGTAAATTCCAGCCTTACAGGTCATATTCCGTCCTCCATCGGTCGGTTAAGTAATCTTATGACTATCGATCTCTCTAAAAATCAACTATCAGGGAATATACCTTCCGAGTTTGGGGATTGCAAATCCTTGAAAGAACTGGATTTGTACGTCAACCAACTCGAGGGACGTATCCCGAATGAATTGGGGTTGCTACATGGGTTAGAGGTCCTTCAATTGTTTTCAAATAGCTTGACTGGTGAGATTCCTATTAGCATCTGGAAGATTGCAAGTCTCCAGCATATTATTGTGTACAACAACAACCTTTCTGGGGAACTGCCCTTGATAATAACTGAGCTCAAGCACCTCAAAAATATATCTGTGTTTAACAACCAGTTTTCTGGAGTTATACCTCAAAGTCTGGGGCTCAACAGTAGTTTAGTGCAGGTGGAGTTCACTAATAACCAGTTCGTTGGTCGAATTCCACCTAATTTATGCTCGGGAAAGACATTACGCGTGTTAAATTTAGGTTTGAATCAATTTCAAGGTAGGGTACCTTCAGATATTGGAACGTGTTCGACTCTTCAGAGGTTGATTTTGAGAAGGAATAATCTAATAGGGACCCTGCCAGAATTTAAGAGAAATCATGGCCTTCGGTTCGTGGATGCCAGTGAAAACAACCTGAATGGAACAATTCCCTCAAGTTTGGGAAATTGCATCAATCTCACCTCGATTAATTTGTCGAGCAACAAGCTTACAGGTCGTATACCTGATGAGTTGGGATCTCTTGTGAACCTTCAAAGTTTGAGCTTGTCTCACAACATTTTGGAAGGACCTTTACCATCTTCTCTGTCAAATTGTACCAAACTGGATAAGTTCGACGTAGGATTCAATTTATTGAATGGTTCTGTACCTCGTAGCTTGTCCAGCTGGAAAGTTATATCCACGTTGATTTTAAAAGAGAATCGATTTACTGGAGGCATCCCGAATATATTGTCAGAACTTGACAGCCTTTCACTGCTAGACCTTGGTGGCAATTTGTTTGGAGGTGAAATCCCTTCATCTCTTGGAGCATTGAAGAATCTGTTTTATTCCTTGAATCTCAGTAACAATGGGTTAACTGGCCAACTACCTTCTGAGCTTGCTAGTTTGGACAAGCTAGGGGAGTTAGATATATCTCACAATAATTTGACTGGAAGTTTAAGCGTTCTTGGCGAACTAAGTTCATCCTTACTTGAGCTTAACATTTCTGATAATTTATTCACGGGTCCTGTGCCACAGACATTAATGAAGTTGCTGAATTCTGATCCCTCATTGTTCTCCGGTAACCCTGGGCTGTGCATCAGCTGTGATGGACTAGATGGGTTAAGTTGCAGCAGAACAAGCAGTATCAAACCTTGTGCTAGCCGTTCAAGCTCTCGTCTTAGCAATATACAAATTGCAATGATAGCTCTCGGAAGTTCGATCTTTATTGTTCTTTTGCTTCTTGGATTGGTTTATAAGTTTGCTTACAGAAGAAGAAACAAACAAAACATTGAGACCTCTGTTCAAGTGGGAGAAACTTCCTTGCTCAACAAGGTGATGGAGGCTACTGATAATCTAGATGAGCGATTCGTCATCGGGAGAGGAGCACATGGCGTTGTTTATAAGGCTTCCCTAGATTCAAATAGAACTTTTGCTGTAAAGAAGCTTACATTTGTAGGATGTAAAGGGGGAAGGCAGAACATGATTAAAGAAATTCGAACTGTTGGCAACATTAGGCATCGGAACTTAATCACTTTGGAAGACTTTTGGTTGGGAAAAGACCATGGTCTGTTGCTTTACAGGTACCAGCCGAATGGAAGCCTTTATGATGTGCTGCATGGGATGAATCCATCTCCAGCTCTAACATGGAAAGTCCGCTATAATATAGCCACTGGAATTGCTCATGGATTAGCATATCTCCATTACGATTGTGATCCTCCTATAATACACCGAGACATCAAACCGCAGAATATACTTCTAGATTCAGAGATGGAACCTCGTATCGGTGATTTCGGTCTTGCAAAGCTGCTGGATCAGACCTCTGCATCGACGACTTCTTCTTCTTTTGCGGGTACAATTGGCTACATTGCACCAGAGAATGCATTTTCAGCAGCAAAGAGCAAAGCTTCAGATGTGTACAGTTATGGGGTGGTTTTACTTGAGCTGATAACGGGAAAGAAGCCATCAGATGCATCATTTACGGAGTTCGGGAGTATCATGGCTTGGGTTCGGTCGGTATGGAACGAGACGGAGGAAATAGATAGAATTGTTGATCCAAGGCTGGTGGAAGAAGCTGTAAACTCTGATGAGAAGGAGCAGATTAAGCAGTTGCTTATGGTGGTTTTGAGATGCACAGAGAGGGAGGCTAACAAGAGGCCAACGATGAGAGATGTAGTGAACCACTTGATTGATTCAAACACAAGTCATGTCAGGAAATATGACTAA 3258 42.39 MRSHLGVIKAAARFVGYVAMQLASHHFLLLVCFSFPICLVSGLTSDGLALLSLQARWTTDTPFIGPEIGNLTHLRTIDLISNTFSGAIPYGIGNCSHLEFLDLSLNQFGGQVPHSLTNLRNLTFLNLHSNVLTGAIPDSLFQILNLQYVYLSENSLNGSIPSNVGNLKQLLHLYLYGNQLSGTVPSSIGNCSQLQDLYLNQNQLVGVLPNTLNHLHNLVNLGVSHNNLEGPIPLGSGNCQSLEYIDLSFNGYSGGIPAGLGNCSGLRTLLVVNSSLTGHIPSSIGRLSNLMTIDLSKNQLSGNIPSEFGDCKSLKELDLYVNQLEGRIPNELGLLHGLEVLQLFSNSLTGEIPISIWKIASLQHIIVYNNNLSGELPLIITELKHLKNISVFNNQFSGVIPQSLGLNSSLVQVEFTNNQFVGRIPPNLCSGKTLRVLNLGLNQFQGRVPSDIGTCSTLQRLILRRNNLIGTLPEFKRNHGLRFVDASENNLNGTIPSSLGNCINLTSINLSSNKLTGRIPDELGSLVNLQSLSLSHNILEGPLPSSLSNCTKLDKFDVGFNLLNGSVPRSLSSWKVISTLILKENRFTGGIPNILSELDSLSLLDLGGNLFGGEIPSSLGALKNLFYSLNLSNNGLTGQLPSELASLDKLGELDISHNNLTGSLSVLGELSSSLLELNISDNLFTGPVPQTLMKLLNSDPSLFSGNPGLCISCDGLDGLSCSRTSSIKPCASRSSSRLSNIQIAMIALGSSIFIVLLLLGLVYKFAYRRRNKQNIETSVQVGETSLLNKVMEATDNLDERFVIGRGAHGVVYKASLDSNRTFAVKKLTFVGCKGGRQNMIKEIRTVGNIRHRNLITLEDFWLGKDHGLLLYRYQPNGSLYDVLHGMNPSPALTWKVRYNIATGIAHGLAYLHYDCDPPIIHRDIKPQNILLDSEMEPRIGDFGLAKLLDQTSASTTSSSFAGTIGYIAPENAFSAAKSKASDVYSYGVVLLELITGKKPSDASFTEFGSIMAWVRSVWNETEEIDRIVDPRLVEEAVNSDEKEQIKQLLMVVLRCTEREANKRPTMRDVVNHLIDSNTSHVRKYD 1085
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 105398 114069 + CmaCh01G000250.1 Cma01g00025 285718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00025 1085 SMART serkin_6 797 1074 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00025 1085 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 215 283 - -
Cma01g00025 1085 SMART LRR_sd22_2 215 247 - -
Cma01g00025 1085 SMART LRR_sd22_2 647 672 - -
Cma01g00025 1085 SMART LRR_sd22_2 287 319 - -
Cma01g00025 1085 SMART LRR_sd22_2 526 552 - -
Cma01g00025 1085 SMART LRR_sd22_2 167 193 - -
Cma01g00025 1085 ProSiteProfiles Leucine-rich repeat profile. 649 671 IPR001611 GO:0005515
Cma01g00025 1085 PANTHER OS08G0446200 PROTEIN 64 234 - -
Cma01g00025 1085 PANTHER OS08G0446200 PROTEIN 265 1080 - -
Cma01g00025 1085 ProSitePatterns Serine/Threonine protein kinases active-site signature. 919 931 IPR008271 GO:0004672|GO:0006468
Cma01g00025 1085 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 265 1080 - -
Cma01g00025 1085 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 64 234 - -
Cma01g00025 1085 Gene3D Phosphorylase Kinase; domain 1 762 873 - -
Cma01g00025 1085 ProSiteProfiles Protein kinase domain profile. 797 1075 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00025 1085 Pfam Leucine rich repeat 265 324 IPR001611 GO:0005515
Cma01g00025 1085 Pfam Leucine rich repeat 487 537 IPR001611 GO:0005515
Cma01g00025 1085 SMART LRR_typ_2 598 622 IPR003591 -
Cma01g00025 1085 SMART LRR_typ_2 647 670 IPR003591 -
Cma01g00025 1085 SMART LRR_typ_2 119 143 IPR003591 -
Cma01g00025 1085 SMART LRR_typ_2 192 214 IPR003591 -
Cma01g00025 1085 SMART LRR_typ_2 167 191 IPR003591 -
Cma01g00025 1085 SMART LRR_typ_2 287 311 IPR003591 -
Cma01g00025 1085 SMART LRR_typ_2 71 95 IPR003591 -
Cma01g00025 1085 SMART LRR_typ_2 526 550 IPR003591 -
Cma01g00025 1085 SMART LRR_typ_2 215 239 IPR003591 -
Cma01g00025 1085 ProSitePatterns Protein kinases ATP-binding region signature. 803 826 IPR017441 GO:0005524
Cma01g00025 1085 SUPERFAMILY L domain-like 382 727 - -
Cma01g00025 1085 Gene3D Transferase(Phosphotransferase) domain 1 875 1084 - -
Cma01g00025 1085 SUPERFAMILY Protein kinase-like (PK-like) 779 1073 IPR011009 -
Cma01g00025 1085 PANTHER OS08G0446200 PROTEIN 215 283 - -
Cma01g00025 1085 Gene3D Ribonuclease Inhibitor 38 163 IPR032675 -
Cma01g00025 1085 Gene3D Ribonuclease Inhibitor 170 334 IPR032675 -
Cma01g00025 1085 Gene3D Ribonuclease Inhibitor 335 715 IPR032675 -
Cma01g00025 1085 SUPERFAMILY RNI-like 63 402 - -
Cma01g00025 1085 Pfam Protein kinase domain 802 1072 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00025 Cma-Chr1:105398 Cma14g01866 Cma-Chr14:13232403 0 dispersed
Cma01g00025 Cma-Chr1:105398 Cma01g00026 Cma-Chr1:114127 3.67E-10 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68236 PF00069 Pkinase 3.30E-47 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00025 - - csv:101204561 1616.67