Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00034 ATGAATTCAGGTCCAAAGCCCTGCATCTCTCCTTTCACACCAACTCAATGGCAAGAACTAGAACACCAAGCTCTCATATTCAAATACATGGTTTCAGGAGTACCTATCCCTCCTGATCTAATCTTCTCTGTGAAAAGAAGCTTGGATTCCTCCATTTCTGCAAGACTCTTCCCTCACCAACCCATTGGGTGGGGATGCTTTGAGATGGGTTTTGGCAGAAAAGCAGATCCTGAACCAGGAAGGTGCAGAAGAACAGATGGGAAAAAATGGAGATGCTCAAAAGAAGCTTATCCAGACTCCAAATACTGCGAGAGGCACATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAATCTCTTCAACGCCACCAGCTCAAACGCCACCGCCTTTAATCCTCACTTCAACCAGGAGCCTCTCTGCTTCCTCCCCAACCTCCTCTTCCTATTCTCTCGCTACACTTTCCTCTTCTTCTTCTCTGACATGTGAAACTCAGTCTTATCAACAAGCTCCTGCTCCTGCTCCTGCTGCTGCTTATCAGGAATCCTCCATTCATCCATATTTGTATCCTCAATCATCATCCTCCAGACCTCCATGTTCTGATTTCTCTCCAACCAGTACAAACCCTCAACTCTTTTTGTACTCAGGGACTCATCCTCAAGCTGACAAAGACTACAGGGATATTAATGGTCCAAGAGAGGGTGCGGGCGTGCAGGCGTTCTTTCCCTCAGTTGCAGACTCTGCAAGAAGCATAGGTGAGGTTTATAGTCAGCCAATAGGGATGGATTCTTACAAAGGATTCTCCCATGCTGTTTCCAACAGCTACCAAATTTACAGTGCGAAACAGGCGAGGCAACAACAAGAGCAACACTGCTTCGTTTTGGGCACAGATTTTAATAAATCGTCAAGATCAGCTAAAACAGAGGAAGAAGATGATGCAGAAACCCAGAAGCCACTACTCCACTTCTTTGAGGATTGCCCACCAAAAAACTCAGATTCCTGGCTTGATTTAGCCACAAATTCAAGTATACAAAGTGGAAATTTTATTGGGTTATGA 1059 45.42 MNSGPKPCISPFTPTQWQELEHQALIFKYMVSGVPIPPDLIFSVKRSLDSSISARLFPHQPIGWGCFEMGFGRKADPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEISSTPPAQTPPPLILTSTRSLSASSPTSSSYSLATLSSSSSLTCETQSYQQAPAPAPAAAYQESSIHPYLYPQSSSSRPPCSDFSPTSTNPQLFLYSGTHPQADKDYRDINGPREGAGVQAFFPSVADSARSIGEVYSQPIGMDSYKGFSHAVSNSYQIYSAKQARQQQEQHCFVLGTDFNKSSRSAKTEEEDDAETQKPLLHFFEDCPPKNSDSWLDLATNSSIQSGNFIGL 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 133440 135617 + CmaCh01G000340.1 Cma01g00034 285727

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00034 352 ProSiteProfiles QLQ domain profile. 11 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cma01g00034 352 PANTHER - 10 346 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cma01g00034 352 PANTHER GROWTH-REGULATING FACTOR 5 10 346 - -
Cma01g00034 352 Pfam WRC 77 119 IPR014977 -
Cma01g00034 352 Pfam QLQ 11 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cma01g00034 352 MobiDBLite consensus disorder prediction 103 148 - -
Cma01g00034 352 MobiDBLite consensus disorder prediction 132 148 - -
Cma01g00034 352 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Cma01g00034 352 SMART QLQ_2 10 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00034 - - - cmos:111452139 650.973
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g00034 Cma14g01236 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00034 Cma-Chr1:133440 Cma10g00759 Cma-Chr10:3480515 2.21E-72 dispersed
Cma01g00034 Cma-Chr1:133440 Cma11g00725 Cma-Chr11:3543552 7.48E-69 wgd
Cma01g00034 Cma-Chr1:133440 Cma14g01236 Cma-Chr14:9788235 0 wgd
Cma01g00034 Cma-Chr1:133440 Cma05g01420 Cma-Chr5:10540072 6.63E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g99 Blo05g00042 . Bda04g00930 . . . . . . . Cma01g00034 Cma14g01236 Car01g00027 Car14g01092 . . . Bhi01g02800 Tan04g2799 Cmetu04g2587 Lac12g2484 Hepe02g1533 . . Cla07g01338 Cam07g1156 Cec07g1527 Cco07g1484 Clacu07g1409 Cmu07g1384 Cre07g1767 . . . . . . Chy04g00698 . . . . . . . Bma09g00981 . . Cmo01g00038 Cmo14g01265 . . . . Cpe02g01745 Cpe03g01046 . . . . . . . . . . . . . . Lsi07g00619 . . Cme04g01295
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma01g00034 CST 11 110 GRF Transcription Factor Family AT3G13960 82.0 7.6e-51 198.7
Cma05g01420 CCT,ECH 6 110 GRF Transcription Factor Family AT3G13960 73.3 7.7e-43 172.2
Cma11g00725 CCT,CST,ECH 8 110 GRF Transcription Factor Family AT3G13960 73.8 2.9e-42 170.2
Cma10g00759 CCT,CST,ECH 8 110 GRF Transcription Factor Family AT3G13960 71.8 8.5e-42 168.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007893 1 3 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 2 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34213 PF08879 WRC 1.90E-21 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g00034 Cma_Chr01 FPKM 0.414997 0.0 5.457765 7.066041 2.768099 2.128872 2.436248 0.575728 0.57863 0.507583