Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00034 ATGAATTCAGGTCCAAAGCCCTGCATCTCTCCTTTCACACCAACTCAATGGCAAGAACTAGAACACCAAGCTCTCATATTCAAATACATGGTTTCAGGAGTACCTATCCCTCCTGATCTAATCTTCTCTGTGAAAAGAAGCTTGGATTCCTCCATTTCTGCAAGACTCTTCCCTCACCAACCCATTGGGTGGGGATGCTTTGAGATGGGTTTTGGCAGAAAAGCAGATCCTGAACCAGGAAGGTGCAGAAGAACAGATGGGAAAAAATGGAGATGCTCAAAAGAAGCTTATCCAGACTCCAAATACTGCGAGAGGCACATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAATCTCTTCAACGCCACCAGCTCAAACGCCACCGCCTTTAATCCTCACTTCAACCAGGAGCCTCTCTGCTTCCTCCCCAACCTCCTCTTCCTATTCTCTCGCTACACTTTCCTCTTCTTCTTCTCTGACATGTGAAACTCAGTCTTATCAACAAGCTCCTGCTCCTGCTCCTGCTGCTGCTTATCAGGAATCCTCCATTCATCCATATTTGTATCCTCAATCATCATCCTCCAGACCTCCATGTTCTGATTTCTCTCCAACCAGTACAAACCCTCAACTCTTTTTGTACTCAGGGACTCATCCTCAAGCTGACAAAGACTACAGGGATATTAATGGTCCAAGAGAGGGTGCGGGCGTGCAGGCGTTCTTTCCCTCAGTTGCAGACTCTGCAAGAAGCATAGGTGAGGTTTATAGTCAGCCAATAGGGATGGATTCTTACAAAGGATTCTCCCATGCTGTTTCCAACAGCTACCAAATTTACAGTGCGAAACAGGCGAGGCAACAACAAGAGCAACACTGCTTCGTTTTGGGCACAGATTTTAATAAATCGTCAAGATCAGCTAAAACAGAGGAAGAAGATGATGCAGAAACCCAGAAGCCACTACTCCACTTCTTTGAGGATTGCCCACCAAAAAACTCAGATTCCTGGCTTGATTTAGCCACAAATTCAAGTATACAAAGTGGAAATTTTATTGGGTTATGA 1059 45.42 MNSGPKPCISPFTPTQWQELEHQALIFKYMVSGVPIPPDLIFSVKRSLDSSISARLFPHQPIGWGCFEMGFGRKADPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEISSTPPAQTPPPLILTSTRSLSASSPTSSSYSLATLSSSSSLTCETQSYQQAPAPAPAAAYQESSIHPYLYPQSSSSRPPCSDFSPTSTNPQLFLYSGTHPQADKDYRDINGPREGAGVQAFFPSVADSARSIGEVYSQPIGMDSYKGFSHAVSNSYQIYSAKQARQQQEQHCFVLGTDFNKSSRSAKTEEEDDAETQKPLLHFFEDCPPKNSDSWLDLATNSSIQSGNFIGL 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 133440 135617 + CmaCh01G000340.1 Cma01g00034 285727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00034 352 ProSiteProfiles QLQ domain profile. 11 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cma01g00034 352 PANTHER - 10 346 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cma01g00034 352 PANTHER GROWTH-REGULATING FACTOR 5 10 346 - -
Cma01g00034 352 Pfam WRC 77 119 IPR014977 -
Cma01g00034 352 Pfam QLQ 11 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cma01g00034 352 MobiDBLite consensus disorder prediction 103 148 - -
Cma01g00034 352 MobiDBLite consensus disorder prediction 132 148 - -
Cma01g00034 352 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Cma01g00034 352 SMART QLQ_2 10 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00034 Cma14g01236 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00034 Cma-Chr1:133440 Cma10g00759 Cma-Chr10:3480515 2.21E-72 dispersed
Cma01g00034 Cma-Chr1:133440 Cma11g00725 Cma-Chr11:3543552 7.48E-69 wgd
Cma01g00034 Cma-Chr1:133440 Cma14g01236 Cma-Chr14:9788235 0 wgd
Cma01g00034 Cma-Chr1:133440 Cma05g01420 Cma-Chr5:10540072 6.63E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34213 PF08879 WRC 1.90E-21 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00034 - - cmos:111452139 650.973