Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00037 ATGAGTAATTGGTTGGGTTTCTCTCTCACTCCCCACCTCAAAATCCATGACGCCACCTCCGCCGACGACCAACACCCAAACCCCAGCAGCTTCCCGCCTCTCATGCCGCTCCGCTCCGACGGATCCCTCTGTATCGCCGCCGCACACGATTGGAGATCGTACGAGAATGAAATGGGTGCAAGGAATGAAGAGGAAAGTCCAAAGCTTGAGGATTTTTTGGGGAATTGTTATTCAAACTCACCGCCAAACGATCAGGCTCATGATAACAACAACAACTTCATCCAGGCGAATACCAATAATAATTACCATTATCACCCGGATCATCACTCTTTAATTTCTAATAATAGTAACGCAATTTACAAGTCGTGGTTAGGTCCTACGACTTCGAGTCCCCAAAACGAGTGTGGGTTTCGATCTTTATCTCTTGGGATGAGCCCCAACTCCCATAACGACACCGTTTCATTGCCATCGCCGCCGCACATGGCGGTGGATTCCCGGAAACGACCGATGCCGGTGGGGAAGCCTCCGGTTAAAGAACCTGTTCCTAGGAAGTCCATTGATACTTTTGGACAAAGAACCTCCCAGTTTCGTGGTGTTACGAGACATAGATGGACAGGGAGATATGAAGCTCATTTATGGGACAACAGCTGCAGAAAAGAGGGCCAAACAAGGAAGGGAAGGCAAGTTTATCTCGGTGGTTACGATAAGGAGGAAAAAGCAGCACGAGCGTATGATTTAGCTGCACTTAAGTATTGGGGTCCAACCACACACATAAATTTTTCATTGAGCACTTACGAAAACGAGTTGGAAGAGATGAAGAACATGACCCGACAGGAGTTCGTAGCCAACTTGAGAAGGAAAAGCAGTGGATTCTCAAGAGGTGCTTCAATGTACAGAGGAGTAACAAGACATCATCAACATGGAAGGTGGCAAGCTAGAATTGGAAGGGTTGCAGGAAATAAGGATTTGTACCTTGGCACATTTAGTACACAAGAGGAGGCGGCGGAGGCCTATGACATAGCAGCCATCAAGTTCAGAGGGACGAGTGCGGTGACTAATTTCGACATTAGTAGGTATGATGTGAAGAGGATTTGTTCTAGTTCGACTCTCATTGCAAGTGACCTTGCGAAACGTTCGCCGTTGAAAGATGGAATTCCATCGACGGCTGAGGAGTATAGTGCATGTGCTTCACCAACGTCGTCGCAGCCTCTCTTGGGCATCACTGAGAATGGCGACGTCGAGAGCCAGCATGAGTTGGTTGAAATGGTTTGGTGCGACAATGGTGGTAAAGATGACGATAATCAACAAGAGGAGAATGTGGCGAAGATGAACGACGACGTGAGTTTGATGGGTTCAAGGAATGAGACAGAGGCATCGAAGTGTTGTATGGTGCAGAACAATGGAGAGTTTGGGGTCGGGGGAGGCGAGTATTCACAAGGATATTACTCAATGGAGGAAGGAAAATATGAAGATGGGAGGGATGAAAATAGGGAGGAGGAGAATGATGTAGCATTGGCTCATCATCAGGTTCCAATGTTCGCTCTATGGAATGAATGA 1557 47.46 MSNWLGFSLTPHLKIHDATSADDQHPNPSSFPPLMPLRSDGSLCIAAAHDWRSYENEMGARNEEESPKLEDFLGNCYSNSPPNDQAHDNNNNFIQANTNNNYHYHPDHHSLISNNSNAIYKSWLGPTTSSPQNECGFRSLSLGMSPNSHNDTVSLPSPPHMAVDSRKRPMPVGKPPVKEPVPRKSIDTFGQRTSQFRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTHINFSLSTYENELEEMKNMTRQEFVANLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKRSPLKDGIPSTAEEYSACASPTSSQPLLGITENGDVESQHELVEMVWCDNGGKDDDNQQEENVAKMNDDVSLMGSRNETEASKCCMVQNNGEFGVGGGEYSQGYYSMEEGKYEDGRDENREEENDVALAHHQVPMFALWNE 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 141200 144404 - CmaCh01G000370.1 Cma01g00037 285730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00037 518 CDD AP2 296 357 IPR001471 GO:0003700|GO:0006355
Cma01g00037 518 ProSiteProfiles AP2/ERF domain profile. 195 261 IPR001471 GO:0003700|GO:0006355
Cma01g00037 518 SMART rav1_2 297 361 IPR001471 GO:0003700|GO:0006355
Cma01g00037 518 SMART rav1_2 195 267 IPR001471 GO:0003700|GO:0006355
Cma01g00037 518 CDD AP2 194 260 IPR001471 GO:0003700|GO:0006355
Cma01g00037 518 MobiDBLite consensus disorder prediction 134 184 - -
Cma01g00037 518 PRINTS Ethylene responsive element binding protein signature 196 207 IPR001471 GO:0003700|GO:0006355
Cma01g00037 518 PRINTS Ethylene responsive element binding protein signature 337 357 IPR001471 GO:0003700|GO:0006355
Cma01g00037 518 SUPERFAMILY DNA-binding domain 296 357 IPR016177 GO:0003677
Cma01g00037 518 Gene3D AP2/ERF domain 297 357 IPR036955 GO:0003700|GO:0006355
Cma01g00037 518 Gene3D AP2/ERF domain 194 263 IPR036955 GO:0003700|GO:0006355
Cma01g00037 518 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 58 458 - -
Cma01g00037 518 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 58 458 - -
Cma01g00037 518 MobiDBLite consensus disorder prediction 134 155 - -
Cma01g00037 518 Pfam AP2 domain 195 253 IPR001471 GO:0003700|GO:0006355
Cma01g00037 518 Pfam AP2 domain 298 347 IPR001471 GO:0003700|GO:0006355
Cma01g00037 518 ProSiteProfiles AP2/ERF domain profile. 297 355 IPR001471 GO:0003700|GO:0006355
Cma01g00037 518 SUPERFAMILY DNA-binding domain 194 263 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00037 Cma-Chr1:141200 Cma09g00308 Cma-Chr9:1272511 6.29E-132 dispersed
Cma01g00037 Cma-Chr1:141200 Cma12g00614 Cma-Chr12:3226740 1.72E-134 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34214 PF00847 AP2 7.10E-13 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00037 K09285 - csv:101205762 761.525