Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00052 ATGATGCAGCAAAGGCATGAGGTGCCACAAAACTTCAGAAGGCAATTGAGCTCAAAGTTGAGGAGGCTTGTTTCACAAGGAAAGCTCGAAAAGGTTCAGAATTGCTACAAGGTAAAGAAAGACAATTCATTGGCAGTTAAAACTCCTACACCCAAACAAAAGGATGTCAGGCAACGAATGTCGCAATATACTATGGGAGGGTTGATGCCATCAGGGGAGACGGTGGAAGACGCAGCGAAAGCAGCTGCCTACAAAGTTGCTGATGCAGAGAACAAATCTTTCTTAGCTGCGGAAGCTGTGAAGGAGGCAGAGAGAATTGCAAAGATGGCTGAAGATACAGATTCTATGCTACAGATTATAAAAGAGATGTATGAAAAATATATGGCGGGTTTGGCTCCAGAAGGTTCTCAATTTGATGCACGTCAGTTTGACTCTAAAATGAATGAGTTACTTTCAGCTGATGGCCAAGATTTCTTCACATCTTATGATGAAGTTTATGATAGTTTTGATTCTATGGGCCTGCAAGAAAACCTTCTCAGAGGCATCTATGCTTATGGTTGTTTTAACCTCGTTTATAAAGGTTTTGAGAAGCCTTCTGCAATTCAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGGCTTGATGTGATCCAACAAGCGCAGTCTGGTACGGGAAAGACTGCAACTTTCTGCTCTGGCATTTTGCAGCAGCTTGATTATGGTCTCGTGCAATGCCAGGCTCTGGTCTTAGCACCCACTAGGGAACTTGCACAACAGATTGAGAAGGTTATGCGAGCCCTTGGTGATTATCTGGGAGTGAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTTCGTGAGGACCAACGCATTCTTCAAGCTGGTGTCCATGTTGTTGTTGGTACTCCTGGTCGTGTGTTTGATATGTTGCGTAGACAGTCACTTCGTCCCGACTGCATTCGAATGTTTGTGTTGGATGAGGCTGATGAGATGCTTTCACGTGGATTCAAGGATCAGATTTATGACATTTTCCAGCTGCTACCATCGAAGATTCAGGTTGGGGTCTTCTCTGCTACAATGCCACCTGAAGCTCTTGAGATCACCAGGAAGTTCATGAACAAGCCTGTAAGAATTCTCGTAAAGCGTGATGAGCTCACCTTGGAAGGTATCAAGCAGTTCTATGTCAATGTTGACAAGGAAGACTGGAAACTCGAGACCCTCTGTGATCTTTATGAGACTTTGGCCATCACCCAGAGTGTCATCTTTGTTAATACTCGTCGTAAAGTGGATTGGCTCACTGATAAGATGCGAAGCCGTGACCACACGGTTTCTGCTACCCATGGTGACATGGACCAGAACACCCGAGACATTATTATGCGTGAGTTCCGTTCAGGCTCTTCTAGAGTCCTCATTACTACCGATCTATTGGCCCGTGGTATTGATGTGCAGCAGGTTTCTCTAGTTATTAACTATGATCTGCCAACACAACCAGAGAATTACCTTCATCGTATAGGAAGAAGTGGACGTTTTGGAAGAAAGGGTGTTGCCATCAACTTTGTAACTAATGAGGACGAAAGAATGCTATTTGACATTCAGAAGTTTTACAACGTGGTAATTGAAGAGCTGCCAGCTAATGTTGCTGATCTCCTGTGA 1647 44.32 MMQQRHEVPQNFRRQLSSKLRRLVSQGKLEKVQNCYKVKKDNSLAVKTPTPKQKDVRQRMSQYTMGGLMPSGETVEDAAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDSMLQIIKEMYEKYMAGLAPEGSQFDARQFDSKMNELLSADGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGCFNLVYKGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTNEDERMLFDIQKFYNVVIEELPANVADLL 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 206398 212559 - CmaCh01G000520.1 Cma01g00052 285745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00052 548 CDD SF2_C_DEAD 388 518 - -
Cma01g00052 548 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 150 548 - -
Cma01g00052 548 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 1 40 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cma01g00052 548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 244 529 IPR027417 -
Cma01g00052 548 Gene3D - 157 383 IPR027417 -
Cma01g00052 548 SMART helicmild6 428 509 IPR001650 -
Cma01g00052 548 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 387 548 IPR001650 -
Cma01g00052 548 PANTHER RNA HELICASE 150 548 - -
Cma01g00052 548 Pfam Helicase conserved C-terminal domain 401 509 IPR001650 -
Cma01g00052 548 Pfam DEAD/DEAH box helicase 200 361 IPR011545 GO:0003676|GO:0005524
Cma01g00052 548 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 167 203 IPR014014 GO:0003724
Cma01g00052 548 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 206 376 IPR014001 -
Cma01g00052 548 SMART ultradead3 194 391 IPR014001 -
Cma01g00052 548 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 322 330 IPR000629 -
Cma01g00052 548 CDD DEADc_EIF4A 172 377 - -
Cma01g00052 548 Gene3D - 384 548 IPR027417 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00052 Cma14g01252 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00052 Cma-Chr1:206398 Cma05g00423 Cma-Chr5:1908259 0 dispersed
Cma07g00710 Cma-Chr7:3118322 Cma01g00052 Cma-Chr1:206398 6.83E-07 dispersed
Cma14g00252 Cma-Chr14:1097817 Cma01g00052 Cma-Chr1:206398 5.83E-64 transposed
Cma14g01253 Cma-Chr14:9933174 Cma01g00052 Cma-Chr1:206398 2.78E-63 transposed
Cma01g00052 Cma-Chr1:206398 Cma14g01252 Cma-Chr14:9927541 0 wgd
Cma01g00052 Cma-Chr1:206398 Cma17g00712 Cma-Chr17:5877920 0 wgd
Cma01g00052 Cma-Chr1:206398 Cma08g00783 Cma-Chr8:4715727 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00052 K03257 - csv:101223055 804.283