Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g00052 | ATGATGCAGCAAAGGCATGAGGTGCCACAAAACTTCAGAAGGCAATTGAGCTCAAAGTTGAGGAGGCTTGTTTCACAAGGAAAGCTCGAAAAGGTTCAGAATTGCTACAAGGTAAAGAAAGACAATTCATTGGCAGTTAAAACTCCTACACCCAAACAAAAGGATGTCAGGCAACGAATGTCGCAATATACTATGGGAGGGTTGATGCCATCAGGGGAGACGGTGGAAGACGCAGCGAAAGCAGCTGCCTACAAAGTTGCTGATGCAGAGAACAAATCTTTCTTAGCTGCGGAAGCTGTGAAGGAGGCAGAGAGAATTGCAAAGATGGCTGAAGATACAGATTCTATGCTACAGATTATAAAAGAGATGTATGAAAAATATATGGCGGGTTTGGCTCCAGAAGGTTCTCAATTTGATGCACGTCAGTTTGACTCTAAAATGAATGAGTTACTTTCAGCTGATGGCCAAGATTTCTTCACATCTTATGATGAAGTTTATGATAGTTTTGATTCTATGGGCCTGCAAGAAAACCTTCTCAGAGGCATCTATGCTTATGGTTGTTTTAACCTCGTTTATAAAGGTTTTGAGAAGCCTTCTGCAATTCAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGGCTTGATGTGATCCAACAAGCGCAGTCTGGTACGGGAAAGACTGCAACTTTCTGCTCTGGCATTTTGCAGCAGCTTGATTATGGTCTCGTGCAATGCCAGGCTCTGGTCTTAGCACCCACTAGGGAACTTGCACAACAGATTGAGAAGGTTATGCGAGCCCTTGGTGATTATCTGGGAGTGAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTTCGTGAGGACCAACGCATTCTTCAAGCTGGTGTCCATGTTGTTGTTGGTACTCCTGGTCGTGTGTTTGATATGTTGCGTAGACAGTCACTTCGTCCCGACTGCATTCGAATGTTTGTGTTGGATGAGGCTGATGAGATGCTTTCACGTGGATTCAAGGATCAGATTTATGACATTTTCCAGCTGCTACCATCGAAGATTCAGGTTGGGGTCTTCTCTGCTACAATGCCACCTGAAGCTCTTGAGATCACCAGGAAGTTCATGAACAAGCCTGTAAGAATTCTCGTAAAGCGTGATGAGCTCACCTTGGAAGGTATCAAGCAGTTCTATGTCAATGTTGACAAGGAAGACTGGAAACTCGAGACCCTCTGTGATCTTTATGAGACTTTGGCCATCACCCAGAGTGTCATCTTTGTTAATACTCGTCGTAAAGTGGATTGGCTCACTGATAAGATGCGAAGCCGTGACCACACGGTTTCTGCTACCCATGGTGACATGGACCAGAACACCCGAGACATTATTATGCGTGAGTTCCGTTCAGGCTCTTCTAGAGTCCTCATTACTACCGATCTATTGGCCCGTGGTATTGATGTGCAGCAGGTTTCTCTAGTTATTAACTATGATCTGCCAACACAACCAGAGAATTACCTTCATCGTATAGGAAGAAGTGGACGTTTTGGAAGAAAGGGTGTTGCCATCAACTTTGTAACTAATGAGGACGAAAGAATGCTATTTGACATTCAGAAGTTTTACAACGTGGTAATTGAAGAGCTGCCAGCTAATGTTGCTGATCTCCTGTGA | 1647 | 44.32 | MMQQRHEVPQNFRRQLSSKLRRLVSQGKLEKVQNCYKVKKDNSLAVKTPTPKQKDVRQRMSQYTMGGLMPSGETVEDAAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDSMLQIIKEMYEKYMAGLAPEGSQFDARQFDSKMNELLSADGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGCFNLVYKGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTNEDERMLFDIQKFYNVVIEELPANVADLL | 548 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 206398 | 212559 | - | CmaCh01G000520.1 | Cma01g00052 | 285745 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g00052 | 548 | CDD | SF2_C_DEAD | 388 | 518 | - | - | |
Cma01g00052 | 548 | PANTHER | EUKARYOTIC INITIATION FACTOR 4A-2 | 150 | 548 | - | - | |
Cma01g00052 | 548 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 1 | 40 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
Cma01g00052 | 548 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 244 | 529 | IPR027417 | - | |
Cma01g00052 | 548 | Gene3D | - | 157 | 383 | IPR027417 | - | |
Cma01g00052 | 548 | SMART | helicmild6 | 428 | 509 | IPR001650 | - | |
Cma01g00052 | 548 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 387 | 548 | IPR001650 | - | |
Cma01g00052 | 548 | PANTHER | RNA HELICASE | 150 | 548 | - | - | |
Cma01g00052 | 548 | Pfam | Helicase conserved C-terminal domain | 401 | 509 | IPR001650 | - | |
Cma01g00052 | 548 | Pfam | DEAD/DEAH box helicase | 200 | 361 | IPR011545 | GO:0003676|GO:0005524 | |
Cma01g00052 | 548 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 167 | 203 | IPR014014 | GO:0003724 | |
Cma01g00052 | 548 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 206 | 376 | IPR014001 | - | |
Cma01g00052 | 548 | SMART | ultradead3 | 194 | 391 | IPR014001 | - | |
Cma01g00052 | 548 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 322 | 330 | IPR000629 | - | |
Cma01g00052 | 548 | CDD | DEADc_EIF4A | 172 | 377 | - | - | |
Cma01g00052 | 548 | Gene3D | - | 384 | 548 | IPR027417 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g00052 | Cma14g01252 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00052 | Cma-Chr1:206398 | Cma05g00423 | Cma-Chr5:1908259 | 0 | dispersed | |
Cma07g00710 | Cma-Chr7:3118322 | Cma01g00052 | Cma-Chr1:206398 | 6.83E-07 | dispersed | |
Cma14g00252 | Cma-Chr14:1097817 | Cma01g00052 | Cma-Chr1:206398 | 5.83E-64 | transposed | |
Cma14g01253 | Cma-Chr14:9933174 | Cma01g00052 | Cma-Chr1:206398 | 2.78E-63 | transposed | |
Cma01g00052 | Cma-Chr1:206398 | Cma14g01252 | Cma-Chr14:9927541 | 0 | wgd | |
Cma01g00052 | Cma-Chr1:206398 | Cma17g00712 | Cma-Chr17:5877920 | 0 | wgd | |
Cma01g00052 | Cma-Chr1:206398 | Cma08g00783 | Cma-Chr8:4715727 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g00052 | K03257 | - | csv:101223055 | 804.283 |