Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00055 ATGATGGAAGAGATGCCTTCTGCTGTTTCTTTGACCCTTAGTTTAGGTAATCCAAAGTCTGATACATCAGGAAGTCCTAGCCATGTCGAATTTACGCGGCTAAAGTTGGTGACAGACAAGGTAAATTTGTTCTCTGCATCGACCCCTGACTCGGGTCCTATTAGTAATGGTAGTTGCCATGGTTTTAGTGGTATAGTCGATAGCATAACCGTGTCGCAACCAAGTGATAGTAGTCAAGGTCGAGATGGTTTTTGGGGGTTGTTGCCGACGAATGGCGTAAGTTTGACTGTCGATAAGGAAGATGCTACCTTATCTACTATGGGTGACCCTGATGAAATGATAGATGATGGGTTGTTTGCTATTGATGGTGGTTCTAATCTTAATGTACAAGAAGTTGTCAAGATTGGAGATGTCAGTAATGGTCATGTTGTTGCCAAGGCTATTATCTTGGTGGAATCAGGGAAGATTCCTACTAGTGAACTTATCGTGGCAACGGTAAGCTCCGATTTAGAAGTATCGACATCGTCAGAGCTAAAAGCCCCTGCAGTGGTTTTCCAATCGAAAGGGGGAGATGGTGTTCATAAAGGCGTTCGGAGTGTCTTTGAGCAGGATTGTGTACCCCTTTGGGGGTCGGTATCGATTTGTGGTAGAAGACCAGAAATGGAGGATGCAATTGCTGTGGTTCCTTGTTTTTCTAAGGTTCCTATCAGAATGCTTGTGGGAAATGGAATGCTTAATGGAATGGGTCAAAGTTTAACACATCTCAACAGCCATTTTTTTGGTGTTTATGATGGACATGGCGGCTCTCAGGTTGCGGATTATTGTCGAGAGCGCATACACTTAGCATTAGCTGAAGAGATTAAAGGGTTTAAGCAAAATCTAAATAATGGAAGCAATAATGGAGAAAACTGGGAGAAGGATTGGGAGAGAACCTTTAACAATTGCTTTGTTAGAGTGGATGATGAAATAGAAGGAAAAGTTGGTAGCTTCAAACCTGTTGCCCCGGAAACTGTTGGCTCTACCGCCGTTGTTGCCTTGGTCTGTTCATCACACATCATAGTTGCGAACTGTGGTGATTCTAGAGCTGTTCTATGCCGTGGCAAAGAACCGATGGCGCTATCGGTCGATCATAAACCAAATCGTGAAGATGAATACGCTCGGATTGAATCGTCTGGAGGCAAGGTCATCCAGTGGAATGGACATCGTGTGTTCGGAGTTCTTGCAATGTCAAGATCCATTGGTGATAGATATTTGAAGCCATGGATCATTCCCGACCCGGAAGTCATGTTTGTTCCTCGAGCGAAAGAAGATGAATGTCTTATTTTAGCCAGTGATGGCCTGTGGGATGTGATGACAAATGAGGAAGTCTGCGAAGTGGCTCGAAGGCGGATTCTTCTTTGGCACAAAAAACACGGAGCTTCATCGCTCACCGATCGGGGCATGGGAGTCGACCCAGCTGCACAAGCTGCAGCAGATTACCTCTCAATGCTTGCTCTCCAAAAGGGAAGCAAAGACAACATCTCTGTGATTGTAGTGGACTTGAAAGCTCAAAGGAAGTTCAAGACCAAATCATGA 1575 44.7 MMEEMPSAVSLTLSLGNPKSDTSGSPSHVEFTRLKLVTDKVNLFSASTPDSGPISNGSCHGFSGIVDSITVSQPSDSSQGRDGFWGLLPTNGVSLTVDKEDATLSTMGDPDEMIDDGLFAIDGGSNLNVQEVVKIGDVSNGHVVAKAIILVESGKIPTSELIVATVSSDLEVSTSSELKAPAVVFQSKGGDGVHKGVRSVFEQDCVPLWGSVSICGRRPEMEDAIAVVPCFSKVPIRMLVGNGMLNGMGQSLTHLNSHFFGVYDGHGGSQVADYCRERIHLALAEEIKGFKQNLNNGSNNGENWEKDWERTFNNCFVRVDDEIEGKVGSFKPVAPETVGSTAVVALVCSSHIIVANCGDSRAVLCRGKEPMALSVDHKPNREDEYARIESSGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFVPRAKEDECLILASDGLWDVMTNEEVCEVARRRILLWHKKHGASSLTDRGMGVDPAAQAAADYLSMLALQKGSKDNISVIVVDLKAQRKFKTKS 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 225285 229133 + CmaCh01G000550.1 Cma01g00055 285748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00055 524 Gene3D - 195 524 IPR036457 -
Cma01g00055 524 ProSitePatterns PPM-type phosphatase domain signature. 259 267 IPR000222 GO:0043169
Cma01g00055 524 SUPERFAMILY PP2C-like 199 515 IPR036457 -
Cma01g00055 524 PANTHER PROTEIN PHOSPHATASE 2C 16 109 524 - -
Cma01g00055 524 PANTHER ALPHABET, ISOFORM E-RELATED 109 524 - -
Cma01g00055 524 ProSiteProfiles PPM-type phosphatase domain profile. 208 514 IPR001932 -
Cma01g00055 524 MobiDBLite consensus disorder prediction 10 27 - -
Cma01g00055 524 MobiDBLite consensus disorder prediction 1 27 - -
Cma01g00055 524 CDD PP2Cc 210 514 IPR001932 -
Cma01g00055 524 SMART PP2C_4 198 512 IPR001932 -
Cma01g00055 524 Pfam Protein phosphatase 2C 234 507 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00055 Cma14g01254 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00055 Cma-Chr1:225285 Cma12g00652 Cma-Chr12:3443551 0 dispersed
Cma01g00055 Cma-Chr1:225285 Cma14g01254 Cma-Chr14:9939265 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00055 K14497 - csv:101203499 920.228