Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00059 ATGATCAAAAGTTTGTTGTTTCAAGCTCAAGCTATGGAGGAAAATTTGTCGAATTTAACTTCAGCTTCAGGTGAAGCTAGTTCCTGCTCCGGCAACCGTTCCGATCAGATTCCGACCAACTACTCCGGTGGCAATTACTTTTCTGCCCCTCCACCACTCCCAAAAAGGAAAAGAAGCCTTCCCGGAAATCCAGACCCAGATGCGGAGGTGGTAGCTTTATCACCGAAGACGCTGATGGCGACGAATAGATTCGTATGCGAGATCTGCAACAAGGGGTTTCAGAGAGATCAGAATCTTCAGCTTCATAGGAGAGGCCACAATTTGCCATGGAAGCTGAAGCCAAGAGCAAACAAAGAGGTGATAAGGAAGAAGGTGTATGTGTGCCCAGAAATAAGCTGTGTTCATCATGATCCATCGAGGGCTCTTGGGGACTTGACAGGAATCAAGAAGCACTTTAGCAGAAAGCACGGTGAGAAGAAATGGAAATGTGATAAGTGTTCTAAGAGGTACGCGGTTCAATCAGATTGGAAAGCTCATTCTAAGACTTGTGGCACTAGAGAGTACAGATGTGACTGTGGAACCCTTTTCTCAAGGAGGGACAGTTTCATCACCCACAGAGCATTTTGTGATGCTTTGGCAGAGGAAAGTGCAAGAACCATTACAGCAAACCCAATACTTATGACCAATAATAACCCTCCACTGCTTCCCAATCCCATTTCTTCAATCTCTCACTTGAACTTCCAAGCTCAAACCCACTTCAACCCATTGGATATCAACTCGTTTGCCCTAAAAAAAGAGCACCAAAATCCACAAAGCTCAACCAATTTCATTCCCCCGTGGTTGGCTAATCATAGTCAAGACCTTAATCCCCTCATCATTAACCCTAATCATCTTGGGCAGACGTCTCTTAATCTTCCAACTGCTTCTTCTTCTTCCCCTTCTCCGCACATGTCAGCCACAGCACTTCTGCAGAAAGCAGCTCAAATGGGAGCTACGATGAGCAGCAACAATAATGCAGAGGCACCACACACAATAATCAGGCCCCAACACTCTCAGGATCATCACGTGTCTGATTCGTCTGCCACCACCAATAATGCAACTTGTAATTTTGGCCTTAACTTGTCCTCCTCCTCCTCCTCACGTGACAATCAGAATCAGGTCTTGATGGGTACTGAAGCTGGTCCAGGCCTTTCTCCTGCACTGCCACTCTACAGGAACAAAACACTTCTTCAAACCACTTTCATCAACAACAACACCACCACCTTTTCTCCAAGTGCCTTTGAAGGGGCTTCTTTTGAAATAGATGAATTTGGAGGGATGTTGAAGAAAGATGAGATTTTTAACGACAACCCAGCAAATGAAGGGTTGAGTACAAGAGATTTTTTGGGGCTTAGAGCAATGTCTCACACTGAGTTTTTGAGTAATATTGCAGCTGCTGGTTATGGAAATTGCATCAATGGTGGTGCTGGTCAAACCCCTCAAACTCAAATTCAAAACCAACCCAGCTGGCAAGGTTAG 1518 45.19 MIKSLLFQAQAMEENLSNLTSASGEASSCSGNRSDQIPTNYSGGNYFSAPPPLPKRKRSLPGNPDPDAEVVALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKPRANKEVIRKKVYVCPEISCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARTITANPILMTNNNPPLLPNPISSISHLNFQAQTHFNPLDINSFALKKEHQNPQSSTNFIPPWLANHSQDLNPLIINPNHLGQTSLNLPTASSSSPSPHMSATALLQKAAQMGATMSSNNNAEAPHTIIRPQHSQDHHVSDSSATTNNATCNFGLNLSSSSSSRDNQNQVLMGTEAGPGLSPALPLYRNKTLLQTTFINNNTTTFSPSAFEGASFEIDEFGGMLKKDEIFNDNPANEGLSTRDFLGLRAMSHTEFLSNIAAAGYGNCINGGAGQTPQTQIQNQPSWQG 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 264054 266741 + CmaCh01G000590.1 Cma01g00059 285752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00059 505 MobiDBLite consensus disorder prediction 373 391 - -
Cma01g00059 505 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Cma01g00059 505 Pfam Zinc finger, C2H2 type 84 106 IPR013087 -
Cma01g00059 505 MobiDBLite consensus disorder prediction 373 393 - -
Cma01g00059 505 Gene3D Classic Zinc Finger 139 218 - -
Cma01g00059 505 MobiDBLite consensus disorder prediction 40 67 - -
Cma01g00059 505 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 475 - -
Cma01g00059 505 SMART c2h2final6 84 106 IPR013087 -
Cma01g00059 505 SMART c2h2final6 126 156 IPR013087 -
Cma01g00059 505 SMART c2h2final6 161 181 IPR013087 -
Cma01g00059 505 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 106 IPR013087 -
Cma01g00059 505 SUPERFAMILY beta-beta-alpha zinc fingers 83 181 IPR036236 -
Cma01g00059 505 Gene3D Classic Zinc Finger 63 131 - -
Cma01g00059 505 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 18 475 - -
Cma01g00059 505 Coils Coil 2 22 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00059 Cma-Chr1:264054 Cma03g00762 Cma-Chr3:5974951 3.45E-114 dispersed
Cma17g01205 Cma-Chr17:8313467 Cma01g00059 Cma-Chr1:264054 7.84E-107 dispersed
Cma18g00661 Cma-Chr18:6056044 Cma01g00059 Cma-Chr1:264054 3.21E-109 dispersed
Cma01g00059 Cma-Chr1:264054 Cma14g01261 Cma-Chr14:9995680 0 wgd
Cma01g00059 Cma-Chr1:264054 Cma17g00719 Cma-Chr17:5913485 1.60E-125 wgd
Cma01g00059 Cma-Chr1:264054 Cma08g00775 Cma-Chr8:4677786 1.47E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34216 PF00096 zf-C2H2 0.0051 CL0361 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00059 K25870 - csv:101204728 600.897