Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00068 ATGACAGTTCAGGGAGAGCATACGTTCTTCCACGGCACGCTCGAAGTTACCGTCTTCCATGCAACAACATACACACCGTCATCACCTCTGGATTGTATATTTTCTGGAGGAAAGCAAAGCTATGTGACCATCAAGATAAACAACATAGAGGTTGCTCGGACAAACCACGAATATGACCGTGTTTGGAACCAAACATTCCGAGTTCTATGTGCGCATCCATTGACATCTACCATCACCATTACAATGAGAACAACTCGTTCTGTATTGGGAAGATTCCAGATCCAAGCCCAACAGATTTTGAAAGAATCAAGTTTCATCAATGGATTCTTTCCACTTCTTATGGAAAATGGGAAGCCGAGTCCAGAGCTCAGACTTAGATTCATGCTATGGTTTCAACCGGCAGTATATGAACTAAGTTGGAAAAAGGTGCTGGAAAATGGAGAGTACAAGGGGCTGAGAAATGTAACGTTTCCTCTAAGGTCCAACTGTCATGTGACTCTGTATCAAGATGCTCACCATGTCTCTACGTTTCAACCTCCGTTTCACGGTTCGAGTGCGCCAAGAAGGCTATGGGAAGATGTGTATAAGGCCATAGATAATGCAAAGCATTTGGTTTACATTGCAGGCTGGTCCTTCAATCCAAAGATGGTGCTGGTAAGAGACCCTCAAACTGATATACCCTATGCCTTGGGAGTAAAGCTTGGTGAGTTGTTGAAGCAGAAGGCAGAGGAAGGAGTAGCAGTGAGACTAATGATATGGGACGACGAGACATCCCTTCCCGTCATCAAGAATGCTGGGATAATGAAAACACATGATGAAAATGCTCGGGCATATTTCTCGAACTCGAAAGTTGTATGTAGGTTGTGCCCCAAATTACATCCTATGTCTCCACCAATTTTCTCTCATCATCAGAAGACCATAACAGTAGATGCTCAAACTCACATCAACGCAAGGAACAGGGAGATTATGAGTTTCATTGGGGGTCTAGATCTTTGTGATGGTCGCTATGACACAGAACAACATTCATTGTTCCATACTTTGAACACAGAATCCCACTGCTGTGATTTCTACCAAACGAGTATATCAGGAGCCAAGCTTCAAAAAGGAGGGCCAAGAGAGCCATGGCATGATGTTCATGCTCGTGTAACAGGTGAAGCTGCTTGGGATATACTAACAAACTTTGAACAACGATGGACTAAGCAATCAGATGCTTCGTTGCTAGTCCCAACAAGCATCTTACTAAAACTGATGCCCCCACTTGAATCAAACACAAACCCACAAAAGGATTGGAACGTACAAGTTTTTCGATCTATCGACCACTTGTCTGCCAGCCAAGTTTTCAGAAACTTGACGGTTGAACGCACCATCCACGAGGCGTATGTCGAAGCTATCAGAAGAGCCGAGAGATTTATTTACATCGAAAACCAATATTTCATAGGAGGGTGTCACTTGTGGGACAAAGATCAACACTGCGGATGCACGAATTTAATACCGATCGAGATTGCGCTCAAGGTGGCTAATAAGATCAAGGCAAGGGAGAAGTTCGCAGTTTATGTAGTGATTCCAATGTGGCCAGAAGGGCCACCAGAGAGTGAATCAGTAGAGGATATGCTACATTGGACCAGGCAGACAATGACAATGATGTATAGATTGATTGGAGAAGCAATCCAAGAAACTGGGGAGAAGGCCCATCCAAGAGACTACTTGAATTTCTTTTGCCTTGCGAACAGAGAAGAAGAGAGAAAGTGGGACTTTGTTCCCCCTCACAGTCCACAACATGCAACAGAATACTGGAGTGCCCAACACCGTAGAAGGTTTATGGTCTATGTCCATTCCAAGGTCATGATAGTGGACGATTTGTACCTTCTGATCGGATCCGCAAACGTGAACCAAAGATCTATGGACGGAGAACGTGATACAGAAATAGCGATCGGATGCTACCAATTAGAAAACGACGGAAAAGAATTGCCAAATGGAAGAGACATTTCAACATTCCGCTTGTCGCTTTGGTACGAACATACTCAACGATTCGAAGAGGTGTTCTTAAACCCCGAAAACTTGCAATGCGTTGAAAGGGTTCGTTCAATAGCAGACGAATCGTGGAAAATTTACAGTGGAGAAGAAGTTGCAGACATGAAAGGTGTTCATCTGGTAACGTACCCTGTGAAGGTAAAACAGGACGGATCGATTGAGGATTTGGAAGAAAATGGAGGTCATTTTCCTGATACTAAATGCCCCATTAAAGGAAGAAGATCAATGTTCTTGCCGCCCATTTTCACGACCTAA 2286 43.88 MTVQGEHTFFHGTLEVTVFHATTYTPSSPLDCIFSGGKQSYVTIKINNIEVARTNHEYDRVWNQTFRVLCAHPLTSTITITMRTTRSVLGRFQIQAQQILKESSFINGFFPLLMENGKPSPELRLRFMLWFQPAVYELSWKKVLENGEYKGLRNVTFPLRSNCHVTLYQDAHHVSTFQPPFHGSSAPRRLWEDVYKAIDNAKHLVYIAGWSFNPKMVLVRDPQTDIPYALGVKLGELLKQKAEEGVAVRLMIWDDETSLPVIKNAGIMKTHDENARAYFSNSKVVCRLCPKLHPMSPPIFSHHQKTITVDAQTHINARNREIMSFIGGLDLCDGRYDTEQHSLFHTLNTESHCCDFYQTSISGAKLQKGGPREPWHDVHARVTGEAAWDILTNFEQRWTKQSDASLLVPTSILLKLMPPLESNTNPQKDWNVQVFRSIDHLSASQVFRNLTVERTIHEAYVEAIRRAERFIYIENQYFIGGCHLWDKDQHCGCTNLIPIEIALKVANKIKAREKFAVYVVIPMWPEGPPESESVEDMLHWTRQTMTMMYRLIGEAIQETGEKAHPRDYLNFFCLANREEERKWDFVPPHSPQHATEYWSAQHRRRFMVYVHSKVMIVDDLYLLIGSANVNQRSMDGERDTEIAIGCYQLENDGKELPNGRDISTFRLSLWYEHTQRFEEVFLNPENLQCVERVRSIADESWKIYSGEEVADMKGVHLVTYPVKVKQDGSIEDLEENGGHFPDTKCPIKGRRSMFLPPIFTT 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 294236 297173 - CmaCh01G000680.1 Cma01g00068 285761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00068 761 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 9 129 IPR035892 -
Cma01g00068 761 SUPERFAMILY Phospholipase D/nuclease 425 688 - -
Cma01g00068 761 SMART pld_4 606 633 IPR001736 GO:0003824
Cma01g00068 761 SMART pld_4 300 335 IPR001736 GO:0003824
Cma01g00068 761 Pfam Phospholipase D Active site motif 300 335 IPR001736 GO:0003824
Cma01g00068 761 Pfam Phospholipase D Active site motif 609 633 IPR001736 GO:0003824
Cma01g00068 761 Gene3D C2 domain 2 131 IPR035892 -
Cma01g00068 761 Pfam Phospholipase D C terminal 678 750 IPR024632 -
Cma01g00068 761 PIRSF PLD_plant 2 761 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cma01g00068 761 Pfam C2 domain 12 112 IPR000008 -
Cma01g00068 761 Gene3D Endonuclease Chain A 170 430 - -
Cma01g00068 761 SUPERFAMILY Phospholipase D/nuclease 149 409 - -
Cma01g00068 761 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 606 633 IPR001736 GO:0003824
Cma01g00068 761 PANTHER PHOSPHOLIPASE D ALPHA 4 7 761 - -
Cma01g00068 761 Gene3D Endonuclease Chain A 445 652 - -
Cma01g00068 761 PANTHER PHOSPHOLIPASE D 7 761 IPR015679 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00068 Cma-Chr1:294236 Cma05g00383 Cma-Chr5:1686515 0 dispersed
Cma01g00068 Cma-Chr1:294236 Cma08g00678 Cma-Chr8:4167206 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00068 K01115 - csv:101206396 1445.64