Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00070 ATGAGTCGAGAGCAGAAGCGGGGGAAGCAGGACAAGGGTTCTGACGATGTCCAGAAGGTGATTGTTGCTGTGAAGGCTTCCAAAGAAATTCCTAAAACTGCATTGGTTTGGGCGTTGACTCATGTTGTTCATATTGGAGATTGCATAACTCTGCTTGTTGTTGTCCCTTCTCAAACCTCTGGTAGAAAATTCTGGGGTTTTCCAAGATTTTCCGGTGACTGTGCCAGCGGTCAAAAGAAATCTCACTCTGGGACAACCTCGGAGCTGAAATATGATATTAGTGATACCTGCTCGCAGATGATCCTGCAGCTTCATGATGTTTATGATCCAAATAAGATAAATGTGAAAATTAAAATTGTTTCTGGGTCACCTAGTGGGGCTGTTACTGCAGAGGCTAAGAGAGTTCATGCTTCCTGGGTTGTATTAGACAAACAGCTCAAACATGAGGAGAAATGCTGCATGGAAGAGTTACAATGCAACATTGTGGTAATGAAGCGATCTCAGCCTAAAGTTCTTCGCTTGAACCTGGTTGGGTCTGGAAAAAAGGAACCAGAAGTGCTCTCTCCCTTACCTTTTGATATAGATGAAGGGTCTGAAAGCCATCACAAAGAACATAATGATCCTCTAGATTTTATTCGAGGACCGGTTGTGACCCCCAGTAGCAGTCCAGAGTTGGGCACGCCTTTTACTGCGACCGAAGCTGGAACGTCGTCGGTGTCGAGCTCCGATCCTGGAACTTCACCATTTTTCAACTCTGAAATGAATGGAGATACAAAGAAAGAGGAATTGTTTGTTATCAAGGAAAATAAAGAAGTAGATGCAGCTAGTTCAGACTTGGATATTGAAAATTTATCTGTATCTTCAGGGAGCTTAAGATTCCAACCATGGATGACAGAATTTCTAAGTTCTTCTCATCTTCAATCCTCACAACACATAACTGGAAGGTCACAGAGATTTGATGATATGAACCAAATGTCAACAAGAAAAGCTTTTCAACCAAAGTTTTCAAAACTTGATCGAGAAGCTCGAATTGAAATGTCAAGCCATAGAAGTGACAATGATTTTCATGGGGACGTTCGAGATGCAGTTTCGTTATCCAGGAACTCGCCACCAGGACCCCCTCCATTATGCTCAATATGTCAACACAAGGCACCAGTTTTTGGGAAGCCTCCAAGGTGGTACAGCTACGCTGAGCTTGAGCTCGCTACAGGTGGATTTTCACAAGCCAACTTTCTTGCAGAAGGGGGATATGGATCTGTTCACAGAGGGGTACTCCCGGATGGTCAGGTGGTTGCTGTCAAGCAGCACAAACTAGCTAGCTCTCAGGGAGACCATGAATTTTGTTCAGAGGTCGAAGTTCTTAGCTGTGCACAACATCGAAACGTTGTGATGTTGATTGGCTTTTGTATAGAGGAGAAAAAAAGGTTACTGGTTTATGAGTACATCTGCAATGGCTCATTGGATTCTCATTTATATGGACGCCAACAAGAGCCATTAGGATGGACTGCACGGCAGAAAATTGCTGTGGGAGCAGCGAGGGGGCTACGATATCTCCATGAAGAATGTAGAGTAGGTTGCATTGTTCACCGGGATATGCGGCCGAACAACATTCTTATCACCCATGATTTTGAACCACTGGTTGGAGATTTTGGCCTTGCGAGGTGGCAGCCTGATGGCGATACCGGCGTTGAGACAAGAGTTATTGGAACATTTGGGTATTTGGCTCCGGAGTATGCTCAAAGTGGCCAAATCACAGAGAAAGCTGATGTTTATTCCTTTGGGGTAGTACTGGTGGAGCTAATCACCGGAAGAAAAGCTGTGGACCTTGGTCGGCCGAAAGGTCAACAGTGTCTCACTGAATGGGCACGCCCCTTGTTGGATGAACTTGTCATTGACGAACTGATTGATCCGAGGTTGGGGAATAGCTTCACGGAGCATGAGGTGTACTGCATGGTGCACGCCGCATCGTTATGCATCCGAAGGGATCCTAACGCCAGGCCTCGTATGTCACAGGTTTTACGGATTCTGGAGGGCGACCTCGTCGTGGATGCTAATTACTTGTCAACTCCGGGATACGATGTGGGAAATCGGAGTGGACGGATGTGGACCGAACAGCAGCAGCAAAACTACAGTGGCTCCTTATCAGAAGAGACCATAGAGAGGTTCAATGAAAAGGTGTGTGTTGAGAGCTTAAGACCAAGTTACTGGGAAAGGGACAAGACAAGGAGGACTTCAAGTGGAAGTGATTTGTAA 2253 45.63 MSREQKRGKQDKGSDDVQKVIVAVKASKEIPKTALVWALTHVVHIGDCITLLVVVPSQTSGRKFWGFPRFSGDCASGQKKSHSGTTSELKYDISDTCSQMILQLHDVYDPNKINVKIKIVSGSPSGAVTAEAKRVHASWVVLDKQLKHEEKCCMEELQCNIVVMKRSQPKVLRLNLVGSGKKEPEVLSPLPFDIDEGSESHHKEHNDPLDFIRGPVVTPSSSPELGTPFTATEAGTSSVSSSDPGTSPFFNSEMNGDTKKEELFVIKENKEVDAASSDLDIENLSVSSGSLRFQPWMTEFLSSSHLQSSQHITGRSQRFDDMNQMSTRKAFQPKFSKLDREARIEMSSHRSDNDFHGDVRDAVSLSRNSPPGPPPLCSICQHKAPVFGKPPRWYSYAELELATGGFSQANFLAEGGYGSVHRGVLPDGQVVAVKQHKLASSQGDHEFCSEVEVLSCAQHRNVVMLIGFCIEEKKRLLVYEYICNGSLDSHLYGRQQEPLGWTARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELITGRKAVDLGRPKGQQCLTEWARPLLDELVIDELIDPRLGNSFTEHEVYCMVHAASLCIRRDPNARPRMSQVLRILEGDLVVDANYLSTPGYDVGNRSGRMWTEQQQQNYSGSLSEETIERFNEKVCVESLRPSYWERDKTRRTSSGSDL 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 300554 305694 - CmaCh01G000700.1 Cma01g00070 285763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00070 750 Pfam Protein tyrosine and serine/threonine kinase 410 675 IPR001245 GO:0004672|GO:0006468
Cma01g00070 750 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 15 711 - -
Cma01g00070 750 PANTHER OS01G0253100 PROTEIN 15 711 IPR045271 GO:0004714|GO:0006468
Cma01g00070 750 Gene3D Phosphorylase Kinase; domain 1 378 481 - -
Cma01g00070 750 SUPERFAMILY Protein kinase-like (PK-like) 390 684 IPR011009 -
Cma01g00070 750 Gene3D HUPs 3 151 IPR014729 -
Cma01g00070 750 Gene3D Transferase(Phosphotransferase) domain 1 482 685 - -
Cma01g00070 750 ProSiteProfiles Protein kinase domain profile. 406 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00070 750 CDD USP_Like 19 142 - -
Cma01g00070 750 ProSitePatterns Tyrosine protein kinases specific active-site signature. 527 539 IPR008266 GO:0004672|GO:0006468
Cma01g00070 750 CDD STKc_IRAK 412 678 - -
Cma01g00070 750 MobiDBLite consensus disorder prediction 220 254 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00070 Cma14g01270 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00070 Cma-Chr1:300554 Cma15g00198 Cma-Chr15:963133 7.80E-98 dispersed
Cma04g01288 Cma-Chr4:6566999 Cma01g00070 Cma-Chr1:300554 1.37E-95 transposed
Cma04g02412 Cma-Chr4:16645846 Cma01g00070 Cma-Chr1:300554 1.12E-105 transposed
Cma09g00181 Cma-Chr9:763087 Cma01g00070 Cma-Chr1:300554 0 transposed
Cma01g00070 Cma-Chr1:300554 Cma10g00709 Cma-Chr10:3187557 0 wgd
Cma01g00070 Cma-Chr1:300554 Cma11g00681 Cma-Chr11:3301309 0 wgd
Cma01g00070 Cma-Chr1:300554 Cma14g01270 Cma-Chr14:10054936 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68238 PF07714 PK_Tyr_Ser-Thr 8.10E-41 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00070 - - csv:101206876 1383.24