Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g00070 | ATGAGTCGAGAGCAGAAGCGGGGGAAGCAGGACAAGGGTTCTGACGATGTCCAGAAGGTGATTGTTGCTGTGAAGGCTTCCAAAGAAATTCCTAAAACTGCATTGGTTTGGGCGTTGACTCATGTTGTTCATATTGGAGATTGCATAACTCTGCTTGTTGTTGTCCCTTCTCAAACCTCTGGTAGAAAATTCTGGGGTTTTCCAAGATTTTCCGGTGACTGTGCCAGCGGTCAAAAGAAATCTCACTCTGGGACAACCTCGGAGCTGAAATATGATATTAGTGATACCTGCTCGCAGATGATCCTGCAGCTTCATGATGTTTATGATCCAAATAAGATAAATGTGAAAATTAAAATTGTTTCTGGGTCACCTAGTGGGGCTGTTACTGCAGAGGCTAAGAGAGTTCATGCTTCCTGGGTTGTATTAGACAAACAGCTCAAACATGAGGAGAAATGCTGCATGGAAGAGTTACAATGCAACATTGTGGTAATGAAGCGATCTCAGCCTAAAGTTCTTCGCTTGAACCTGGTTGGGTCTGGAAAAAAGGAACCAGAAGTGCTCTCTCCCTTACCTTTTGATATAGATGAAGGGTCTGAAAGCCATCACAAAGAACATAATGATCCTCTAGATTTTATTCGAGGACCGGTTGTGACCCCCAGTAGCAGTCCAGAGTTGGGCACGCCTTTTACTGCGACCGAAGCTGGAACGTCGTCGGTGTCGAGCTCCGATCCTGGAACTTCACCATTTTTCAACTCTGAAATGAATGGAGATACAAAGAAAGAGGAATTGTTTGTTATCAAGGAAAATAAAGAAGTAGATGCAGCTAGTTCAGACTTGGATATTGAAAATTTATCTGTATCTTCAGGGAGCTTAAGATTCCAACCATGGATGACAGAATTTCTAAGTTCTTCTCATCTTCAATCCTCACAACACATAACTGGAAGGTCACAGAGATTTGATGATATGAACCAAATGTCAACAAGAAAAGCTTTTCAACCAAAGTTTTCAAAACTTGATCGAGAAGCTCGAATTGAAATGTCAAGCCATAGAAGTGACAATGATTTTCATGGGGACGTTCGAGATGCAGTTTCGTTATCCAGGAACTCGCCACCAGGACCCCCTCCATTATGCTCAATATGTCAACACAAGGCACCAGTTTTTGGGAAGCCTCCAAGGTGGTACAGCTACGCTGAGCTTGAGCTCGCTACAGGTGGATTTTCACAAGCCAACTTTCTTGCAGAAGGGGGATATGGATCTGTTCACAGAGGGGTACTCCCGGATGGTCAGGTGGTTGCTGTCAAGCAGCACAAACTAGCTAGCTCTCAGGGAGACCATGAATTTTGTTCAGAGGTCGAAGTTCTTAGCTGTGCACAACATCGAAACGTTGTGATGTTGATTGGCTTTTGTATAGAGGAGAAAAAAAGGTTACTGGTTTATGAGTACATCTGCAATGGCTCATTGGATTCTCATTTATATGGACGCCAACAAGAGCCATTAGGATGGACTGCACGGCAGAAAATTGCTGTGGGAGCAGCGAGGGGGCTACGATATCTCCATGAAGAATGTAGAGTAGGTTGCATTGTTCACCGGGATATGCGGCCGAACAACATTCTTATCACCCATGATTTTGAACCACTGGTTGGAGATTTTGGCCTTGCGAGGTGGCAGCCTGATGGCGATACCGGCGTTGAGACAAGAGTTATTGGAACATTTGGGTATTTGGCTCCGGAGTATGCTCAAAGTGGCCAAATCACAGAGAAAGCTGATGTTTATTCCTTTGGGGTAGTACTGGTGGAGCTAATCACCGGAAGAAAAGCTGTGGACCTTGGTCGGCCGAAAGGTCAACAGTGTCTCACTGAATGGGCACGCCCCTTGTTGGATGAACTTGTCATTGACGAACTGATTGATCCGAGGTTGGGGAATAGCTTCACGGAGCATGAGGTGTACTGCATGGTGCACGCCGCATCGTTATGCATCCGAAGGGATCCTAACGCCAGGCCTCGTATGTCACAGGTTTTACGGATTCTGGAGGGCGACCTCGTCGTGGATGCTAATTACTTGTCAACTCCGGGATACGATGTGGGAAATCGGAGTGGACGGATGTGGACCGAACAGCAGCAGCAAAACTACAGTGGCTCCTTATCAGAAGAGACCATAGAGAGGTTCAATGAAAAGGTGTGTGTTGAGAGCTTAAGACCAAGTTACTGGGAAAGGGACAAGACAAGGAGGACTTCAAGTGGAAGTGATTTGTAA | 2253 | 45.63 | MSREQKRGKQDKGSDDVQKVIVAVKASKEIPKTALVWALTHVVHIGDCITLLVVVPSQTSGRKFWGFPRFSGDCASGQKKSHSGTTSELKYDISDTCSQMILQLHDVYDPNKINVKIKIVSGSPSGAVTAEAKRVHASWVVLDKQLKHEEKCCMEELQCNIVVMKRSQPKVLRLNLVGSGKKEPEVLSPLPFDIDEGSESHHKEHNDPLDFIRGPVVTPSSSPELGTPFTATEAGTSSVSSSDPGTSPFFNSEMNGDTKKEELFVIKENKEVDAASSDLDIENLSVSSGSLRFQPWMTEFLSSSHLQSSQHITGRSQRFDDMNQMSTRKAFQPKFSKLDREARIEMSSHRSDNDFHGDVRDAVSLSRNSPPGPPPLCSICQHKAPVFGKPPRWYSYAELELATGGFSQANFLAEGGYGSVHRGVLPDGQVVAVKQHKLASSQGDHEFCSEVEVLSCAQHRNVVMLIGFCIEEKKRLLVYEYICNGSLDSHLYGRQQEPLGWTARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELITGRKAVDLGRPKGQQCLTEWARPLLDELVIDELIDPRLGNSFTEHEVYCMVHAASLCIRRDPNARPRMSQVLRILEGDLVVDANYLSTPGYDVGNRSGRMWTEQQQQNYSGSLSEETIERFNEKVCVESLRPSYWERDKTRRTSSGSDL | 750 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 300554 | 305694 | - | CmaCh01G000700.1 | Cma01g00070 | 285763 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g00070 | 750 | Pfam | Protein tyrosine and serine/threonine kinase | 410 | 675 | IPR001245 | GO:0004672|GO:0006468 | |
Cma01g00070 | 750 | PANTHER | KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN | 15 | 711 | - | - | |
Cma01g00070 | 750 | PANTHER | OS01G0253100 PROTEIN | 15 | 711 | IPR045271 | GO:0004714|GO:0006468 | |
Cma01g00070 | 750 | Gene3D | Phosphorylase Kinase; domain 1 | 378 | 481 | - | - | |
Cma01g00070 | 750 | SUPERFAMILY | Protein kinase-like (PK-like) | 390 | 684 | IPR011009 | - | |
Cma01g00070 | 750 | Gene3D | HUPs | 3 | 151 | IPR014729 | - | |
Cma01g00070 | 750 | Gene3D | Transferase(Phosphotransferase) domain 1 | 482 | 685 | - | - | |
Cma01g00070 | 750 | ProSiteProfiles | Protein kinase domain profile. | 406 | 687 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma01g00070 | 750 | CDD | USP_Like | 19 | 142 | - | - | |
Cma01g00070 | 750 | ProSitePatterns | Tyrosine protein kinases specific active-site signature. | 527 | 539 | IPR008266 | GO:0004672|GO:0006468 | |
Cma01g00070 | 750 | CDD | STKc_IRAK | 412 | 678 | - | - | |
Cma01g00070 | 750 | MobiDBLite | consensus disorder prediction | 220 | 254 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g00070 | Cma14g01270 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00070 | Cma-Chr1:300554 | Cma15g00198 | Cma-Chr15:963133 | 7.80E-98 | dispersed | |
Cma04g01288 | Cma-Chr4:6566999 | Cma01g00070 | Cma-Chr1:300554 | 1.37E-95 | transposed | |
Cma04g02412 | Cma-Chr4:16645846 | Cma01g00070 | Cma-Chr1:300554 | 1.12E-105 | transposed | |
Cma09g00181 | Cma-Chr9:763087 | Cma01g00070 | Cma-Chr1:300554 | 0 | transposed | |
Cma01g00070 | Cma-Chr1:300554 | Cma10g00709 | Cma-Chr10:3187557 | 0 | wgd | |
Cma01g00070 | Cma-Chr1:300554 | Cma11g00681 | Cma-Chr11:3301309 | 0 | wgd | |
Cma01g00070 | Cma-Chr1:300554 | Cma14g01270 | Cma-Chr14:10054936 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68238 | PF07714 | PK_Tyr_Ser-Thr | 8.10E-41 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g00070 | - | - | csv:101206876 | 1383.24 |