Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00085 ATGGCAACTCTCCAATTCTTCGTCCTCCTCCTCCTTTCCAGTTCCGCTCTCAACAATTTCGTCTCTGCGCAGAATCCTTCAGGTTTCATTAGTTTAGACTGCGGAATTCCGGCGAACTCCACCTACACAGAACCGAACACAGGAATAATCTACGAATCCGATGCGGCGTTCATAAATTCCGGCGAACTCCACAACATTTCCGCCGATGTCATACAGAATGGTCTTGGACGGCAGCTGTGGAGCCTGAGGAGCTTTCCGGAAGGAGTTAGGAATTGCTACAAGTTGAAAGTGAGGGCAGGGACGAAGTATTTGATTCGAGCGACTTTTCGGTACGGAAATTACGATGGTAGAAGGAATTTGCCTGGATTTGATCTGTATTTGGGAGCGAACGTTTGGGATTCGATAACATTTACTGAAGATTTGGTGGTGCGTAAAGAGATTGTGCATATTGTTTCGTCCAGCGATGTACAAATTTGTGTTGTGAATGTTGGAACTGGAATTCCGTTCATTTCTGCTCTGGAATTGAGGCCTCTGAAAGACTCTATTTACCAGTCCGGATCTCTGACGTTGGCTAATTTCTTCCGCCTTGATTTTGGCTCCCTTGATAACCGAACAATCAGGTACAAAGACGACGTCTACGATCGAATCTGGGATCCACCGATTCCAATCAAAGAATGGACAACCTTAAACACCTCGCAGCAAGTGAATGTCAACGACCAGGCCTTCTTCCAGCCGCCTCCGGCGGTCATGAACACGTCGTTGACGCCGAGAAACGCAAGCGCTCCGATGGTGTTCACATGGCAGCCGCCGGATTCCACGACGCCGTTTTTCCTCTACATGTATTTTGCGGAGCTGAAGAAGCTTCAAGCGAATGAGTCCAGAGAGTTCGACATAACTGTGAATGGAGAACGGTGGCTTAATAAATCGTTTTCTCCCCAATTTTTAAGCGTATCGATCGTTTTCAGTACCTCACCTATGACTGGCGGATCATACGAGATCTCCCTCGTGAGGACTGCCAATTCAACCCTCCCTCCGATCCTCAATGCTGTTGAGATTTATCGAGTCGTCAATTTCTCGCAATCCGAGACAGCTAGAGAAGATGTTGTTGCCATTGAGAATATCAAAACAGTGTATGGAGTTAGAAGAAACTGGCAAGGAGATCCGTGTGTCCCAAGGGGATTAATTTGGCAAGGACTCAACTGTAGCTTGGTGAACTCTGTGCCTCCCAGAATCACATCCTTGGATTTGTCCTCCAGTGGACTGACGGGTGAAATACCTAGAGATATAGCTGATCTTAAAATGCTGGAGACTCTAGATCTGTCAAACAATAATTTGAGCGGATCAGTGCCTGAATTTATCACTCAATTGCCATCGTTGCGAGTCCTAAACTTGGAGAAAAACAAGCTTTCAGGACTAATTCCAGCCCAGCTCGTAGAAAGGTCCAATAATGGCTCTCTGTTATTAAGATTTGGCGAAAATCCTAATCTGTTTACTACGCCTCCAAGCAAAGAGAAGGGAAGCAAAGTTGTTGTTCCTGTAGTAGCATCAGTTGTTGGATTTCTTCTGCTTTTGTTCTTAATTGCAGCGGCTATCTTTTGGAGGAAAAAAATAAGAAAATCAAAAGAAGCTGTAATTGGAGTGGCGAAACAAGCTGTTGATCATTCTGAAAATTGGGACACGACTAAGAGATGCTATTCATACTCGGATGTCCTAAGAATGACAAACAATTTCGAGCGTATGCTTGGAGAAGGTGGTTTTGGACGAGTTTACTATGGCAAAATCGAAAACATTGAAGTAGCTGTCAAAATGCTATCTCCTCGATCCATTCAAGGGTATCAACAATTTCAAGCAGAGGTTGACCTTCTTATGAGGGTTCATCATAGAAACTTGACTGGTCTGGTTGGATTTTGCAATGAACCGACCAACAAAGGACTCATCTATGAGTACATGGGCAGAGGAAACTTGGGATCTCTCATCTCAGATGAAAAGTCTGCTCTGTTGAATTGGGAAGACAGACTTCACATAGCAGTGGATGCAGCACAAGGATTACAGTACTTGCATTCTGGTATAAAGCCAGCTATTGTACATAGAGATGTAAAATCTTCCAACATCTTGTTGGATGATAACTTTCGAGCAAAGGTATCTGATTTCGGGTTGTCGAGAGTTTTTCCTGTCGACGATGGTGCCACTCATGTGACAACGAATGTGGTTGGCACTCCTGGTTACCTCGACCCTGAATATTACACGTCGTATAGATTAAATGAAAAAAGCGACATTTATGGCTTCGGAATTGTTCTTCTAGAAATCATAACAGGAAAACCAGTTTTGACAAAGAGTTCAGAGAAGGTAATTCACATCTATCAATGGGTTGACTCGATGCTTTCTCAAGGTGATATCAGCTCCATTATCGATCCAAAATTGAAAGAAGATTTCAACGTAAACACCGTTTGGAAAGCGGTTGAAATCGCAATGTCATGTGCATCTCTGGCGTCTACAAATAGGCCAACGATGAACCAAGTTGTGATAGATTTGAATGAATGTTTGAACATGGAGTTGGCTCACAGTGCCAGTAATCACCAGCCTGAATCAGTAGCTGCTGATCACGTTTCTTTGTTTGGTCCTGAAGCAAGCTATTTGATGTTTATTATAGGCTACAAATTCGATCTCATAAAGTTATTTCAAATTTATGGGAGAATCTTATTCGAATCTACAACTCCAACTAATCCAAAATTAGAGAAAATTTATAGAAGAAAACTGTGCTTCACTCTCTACTCATTTCCTAATCCAATGGGCAAACTCAAAGCCTTCCTTCTTACGTTCATCGCCACTCTTCCTCTTCTGCATTTGGTTCATGCCCAAACCCAACAAGGCTTCATCAGTATTGATTGTGGCTCCAATTCTAGCTATACTGAGCCAACTACGGGTATCAATTATGTCTCTGATTCTAATTACGTGGAAACCGGTTTGGCCATAACTTTACCATCAAGTAGCCATTCCGGAACTCTCCTACAACAGCTACGGAGCCTTAGAAGCTTTCCCAATGGAACAAGGAACTGCTATAACATTCAAGTCAAACTTGGCATCAAGTATTTGATTCGAGCAAGTTTCTTCTATGCCAATTATGATGCCCAAAACAACATTCCAAAATTCGATCTATACTTTGGACCTGATTTCTGGGTCACCGTGAATTTAGGAGACGACATAAAAAATATCATCAATAACGAAATCATTCATATCACAACCTCAAACCAGGTGCAGATTTGCCTCGTCAACAATGGAAATGGGGTTCCTTTTGTTTCAGCGTTGGAGCTAAGGCCATTGCCAGACACCACTTATGTAACTACAACTGGCTCATTATCAACTTTCTTGCGCTTGGACACTGGCTCTCCAAACGATTATCTCATCCGATTTCCAGACGACATATATGATCGTGTTTGGAGTCCACCATCTCCACTCCTCCAATGGACTCCTATAAATACTTCACTCCCCATTGCCAACAAAGATTCATTTCGTTTCATGGCACCCTCTAAGGTGTTGAGCACGGCCTCCACAGTAATAAATGCAAGTGCACCCATGGAGATTTATTGGGACGATGATAATGGGCCTAACCTATACTATGTATACATGTATTTTGCTGAACTTCAGGTGCTCAAGCCCAACCAATCCAGATTATTCAAAATCTATCTAAATGATGATCTTTTGATAAAGGAGGATATTGTGGTTGATTATCTATCAGAAAATCTGGTTCGTACTATAATTCCCTCGAGTTTTCGTGATTATAAATTGATCATGTCCGAAGGGTCAACTCTTCCGCCCATTCTGAACGCAATTGAGATATACAAAGTGATGAACTTCACACAACTCACAACAGAACAAGCTGATGTTGATGCCATTGAATCCATTAAGCATAATTATGGGGTTACTAAAAACTGGCAAGGGGATCCATGTGCTCCTACAACATTTGTCTGGCAAGGACTCAACTGCAGTTCTGATGCTTCAAACCCTCCAAGAATCACACTGCTAGATTTATCGTCGAGTGGATTGAGTGGAGAGATTTTAGGCAACATAGCAAATCTAGCAGAGCTAGAGGTTTTGGATTTGTCAAATAATAGCCTTAGTGGAGTGGTGCCTGATTTTCTTGCTAAAATGCCAATGTTGACTGTCCTAAAATTATCAGGAAACAACCTGTCTGGACAGATTCCTGCCGCTCTTATTGACAAAATAAATAAAGGGTCTCTTTTATTAAGTACGGAGGGAAATCCGAATCTACAAGGAACAACACCAAGCGAAGAGAAGAAGAATAACATAGTAGTTCCAATAGCAGCAGCAATTGGTGGAGCTATCATCATTTTACTCTTGATTTTAGCTTCTGTTTACTTCATTCGACGCAAACGAAGTAATTCTAAAGCCCCAATCATCGTGGACCCCCATTCACCAATGAATTCTGAACTTCACCTTCGTCCACATGAGCCATTACACACACCAAGTCGCCAACTTTCCTACTCGGACATCTTAAAAATGACCAATAATTTCAGTAGACTATTGGGTGAAGGTGGGTTTGGAAAGGTTTATTATGGTGTCATGGGTAACACTGAAGTGGCTGTAAAGATGTTGTCTCCAAAATCAGCTCAAGGGTATCGAGAATTTCAAGCAGAGGTCGATCTTCTGTTGAGAGTTCATCACAGAAACTTAACTGGCCTGGTTGGATATTGCAATGAAGGGGAAACAAAAATGGGGCTTGTCTATGAATACATGGCCAAAGGAAACCTAGGATCAGTGCTTTCTGATGGAAGAGTTGTTTTAAGGTGGGGAGAAAGGCTTCAAATAGCATTGGATTCAGCACAAGGATTGGAATATCTACACAATGGTTGTAGGCCTCCAATTATCCATAGAGATATCAAACCAAGCAACATTTTACTGAACGAGTATTTACAAGCCAAACTTGCTGATTTCGGCCTGTCGAGAGCTTTTCCTATTGAAGGGGGTGCGACTCATGTGACAACAAACGTGGTTGGAACTCCTGGATACCTTGATCCTGAGTATCACTCATCGTACAAATTGACAGAGAAGAGTGATGTTTATAGCTTTGGAATTGTTATTTTAGAACTCATCACTGGAAGAGCTGTACTAGTGAAAACTAGCGAGAAAACTCATATTATCCAGTGGGTTGATTCCAACATTGCCCAAGGCGACATCTACTCTATAATTGATCCCAACATAAAAGAAGATTGCTACACTAACTCAATGTGGAAAGCAGTAGACATAGGAATGTCTTGCACGGCTCGTAATCCTTTAAATAGGCCAACAATGAGCCAGGTTGTAAATGAACTCAAGGAATGCCTAAGCCTTGAGCTAAACCAGAGAGACCATCAAACTGATTCTGCTACAGCCATCTCTTCAACCATCCATTCGGAGATGGGTCCTGTAGCAAGATAG 5436 42.27 MATLQFFVLLLLSSSALNNFVSAQNPSGFISLDCGIPANSTYTEPNTGIIYESDAAFINSGELHNISADVIQNGLGRQLWSLRSFPEGVRNCYKLKVRAGTKYLIRATFRYGNYDGRRNLPGFDLYLGANVWDSITFTEDLVVRKEIVHIVSSSDVQICVVNVGTGIPFISALELRPLKDSIYQSGSLTLANFFRLDFGSLDNRTIRYKDDVYDRIWDPPIPIKEWTTLNTSQQVNVNDQAFFQPPPAVMNTSLTPRNASAPMVFTWQPPDSTTPFFLYMYFAELKKLQANESREFDITVNGERWLNKSFSPQFLSVSIVFSTSPMTGGSYEISLVRTANSTLPPILNAVEIYRVVNFSQSETAREDVVAIENIKTVYGVRRNWQGDPCVPRGLIWQGLNCSLVNSVPPRITSLDLSSSGLTGEIPRDIADLKMLETLDLSNNNLSGSVPEFITQLPSLRVLNLEKNKLSGLIPAQLVERSNNGSLLLRFGENPNLFTTPPSKEKGSKVVVPVVASVVGFLLLLFLIAAAIFWRKKIRKSKEAVIGVAKQAVDHSENWDTTKRCYSYSDVLRMTNNFERMLGEGGFGRVYYGKIENIEVAVKMLSPRSIQGYQQFQAEVDLLMRVHHRNLTGLVGFCNEPTNKGLIYEYMGRGNLGSLISDEKSALLNWEDRLHIAVDAAQGLQYLHSGIKPAIVHRDVKSSNILLDDNFRAKVSDFGLSRVFPVDDGATHVTTNVVGTPGYLDPEYYTSYRLNEKSDIYGFGIVLLEIITGKPVLTKSSEKVIHIYQWVDSMLSQGDISSIIDPKLKEDFNVNTVWKAVEIAMSCASLASTNRPTMNQVVIDLNECLNMELAHSASNHQPESVAADHVSLFGPEASYLMFIIGYKFDLIKLFQIYGRILFESTTPTNPKLEKIYRRKLCFTLYSFPNPMGKLKAFLLTFIATLPLLHLVHAQTQQGFISIDCGSNSSYTEPTTGINYVSDSNYVETGLAITLPSSSHSGTLLQQLRSLRSFPNGTRNCYNIQVKLGIKYLIRASFFYANYDAQNNIPKFDLYFGPDFWVTVNLGDDIKNIINNEIIHITTSNQVQICLVNNGNGVPFVSALELRPLPDTTYVTTTGSLSTFLRLDTGSPNDYLIRFPDDIYDRVWSPPSPLLQWTPINTSLPIANKDSFRFMAPSKVLSTASTVINASAPMEIYWDDDNGPNLYYVYMYFAELQVLKPNQSRLFKIYLNDDLLIKEDIVVDYLSENLVRTIIPSSFRDYKLIMSEGSTLPPILNAIEIYKVMNFTQLTTEQADVDAIESIKHNYGVTKNWQGDPCAPTTFVWQGLNCSSDASNPPRITLLDLSSSGLSGEILGNIANLAELEVLDLSNNSLSGVVPDFLAKMPMLTVLKLSGNNLSGQIPAALIDKINKGSLLLSTEGNPNLQGTTPSEEKKNNIVVPIAAAIGGAIIILLLILASVYFIRRKRSNSKAPIIVDPHSPMNSELHLRPHEPLHTPSRQLSYSDILKMTNNFSRLLGEGGFGKVYYGVMGNTEVAVKMLSPKSAQGYREFQAEVDLLLRVHHRNLTGLVGYCNEGETKMGLVYEYMAKGNLGSVLSDGRVVLRWGERLQIALDSAQGLEYLHNGCRPPIIHRDIKPSNILLNEYLQAKLADFGLSRAFPIEGGATHVTTNVVGTPGYLDPEYHSSYKLTEKSDVYSFGIVILELITGRAVLVKTSEKTHIIQWVDSNIAQGDIYSIIDPNIKEDCYTNSMWKAVDIGMSCTARNPLNRPTMSQVVNELKECLSLELNQRDHQTDSATAISSTIHSEMGPVAR 1811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 386258 395921 + CmaCh01G000850.1 Cma01g00085 285778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00085 1811 SUPERFAMILY Protein kinase-like (PK-like) 558 844 IPR011009 -
Cma01g00085 1811 SMART serkin_6 1509 1781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00085 1811 SMART serkin_6 575 848 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00085 1811 Gene3D Transferase(Phosphotransferase) domain 1 650 869 - -
Cma01g00085 1811 Gene3D Transferase(Phosphotransferase) domain 1 1585 1805 - -
Cma01g00085 1811 Pfam Protein kinase domain 1512 1775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00085 1811 PANTHER PUTATIVE-RELATED 12 866 - -
Cma01g00085 1811 CDD STKc_IRAK 1515 1779 - -
Cma01g00085 1811 SUPERFAMILY L domain-like 1305 1409 - -
Cma01g00085 1811 ProSiteProfiles Protein kinase domain profile. 575 848 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00085 1811 ProSiteProfiles Leucine-rich repeat profile. 434 456 IPR001611 GO:0005515
Cma01g00085 1811 Gene3D Phosphorylase Kinase; domain 1 548 649 - -
Cma01g00085 1811 PANTHER OS07G0107800 PROTEIN-RELATED 944 1810 - -
Cma01g00085 1811 Pfam Leucine rich repeat 1336 1396 IPR001611 GO:0005515
Cma01g00085 1811 Pfam Leucine rich repeat 409 469 IPR001611 GO:0005515
Cma01g00085 1811 PANTHER PUTATIVE-RELATED 944 1810 - -
Cma01g00085 1811 PRINTS Leucine-rich repeat signature 435 448 - -
Cma01g00085 1811 PRINTS Leucine-rich repeat signature 456 469 - -
Cma01g00085 1811 SUPERFAMILY Protein kinase-like (PK-like) 1487 1777 IPR011009 -
Cma01g00085 1811 Pfam Malectin-like domain 961 1282 IPR024788 -
Cma01g00085 1811 Pfam Malectin-like domain 32 355 IPR024788 -
Cma01g00085 1811 ProSiteProfiles Protein kinase domain profile. 1509 1781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00085 1811 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1628 1640 IPR008271 GO:0004672|GO:0006468
Cma01g00085 1811 SMART LRR_typ_2 432 455 IPR003591 -
Cma01g00085 1811 SMART LRR_typ_2 1359 1382 IPR003591 -
Cma01g00085 1811 SMART LRR_typ_2 456 479 IPR003591 -
Cma01g00085 1811 SMART LRR_typ_2 1383 1407 IPR003591 -
Cma01g00085 1811 SUPERFAMILY L domain-like 366 479 - -
Cma01g00085 1811 ProSitePatterns Protein kinases ATP-binding region signature. 581 602 IPR017441 GO:0005524
Cma01g00085 1811 ProSitePatterns Serine/Threonine protein kinases active-site signature. 694 706 IPR008271 GO:0004672|GO:0006468
Cma01g00085 1811 PANTHER OS07G0107800 PROTEIN-RELATED 12 866 - -
Cma01g00085 1811 ProSitePatterns Protein kinases ATP-binding region signature. 1515 1536 IPR017441 GO:0005524
Cma01g00085 1811 Gene3D Phosphorylase Kinase; domain 1 1491 1584 - -
Cma01g00085 1811 Gene3D Ribonuclease Inhibitor 371 486 IPR032675 -
Cma01g00085 1811 Gene3D Ribonuclease Inhibitor 1293 1423 IPR032675 -
Cma01g00085 1811 Pfam Protein tyrosine and serine/threonine kinase 577 842 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00085 Cma-Chr1:386258 Cma08g00746 Cma-Chr8:4478596 0 dispersed
Cma17g00748 Cma-Chr17:6079391 Cma01g00085 Cma-Chr1:386258 5.64E-52 dispersed
Cma18g00724 Cma-Chr18:6549239 Cma01g00085 Cma-Chr1:386258 1.17E-126 dispersed
Cma01g00082 Cma-Chr1:373554 Cma01g00085 Cma-Chr1:386258 1.65E-85 proximal
Cma01g00085 Cma-Chr1:386258 Cma01g00086 Cma-Chr1:397341 0 tandem
Cma04g00248 Cma-Chr4:1211977 Cma01g00085 Cma-Chr1:386258 1.55E-16 transposed
Cma01g00085 Cma-Chr1:386258 Cma08g00744 Cma-Chr8:4467063 2.24E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68239 PF12819 Malectin_like 7.90E-112 CL0202 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00085 - - csv:101215225 1389.79