Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00086 ATGGCCAAACTCAAAGCCTTCCTTTCTGCCTTCATCGCCACTCTTCCTCTCCTGCATTTGGTGCATGCCCAAACCCAACAAGGCTTCATCAGTATTGATTGCGGCTCCAATTCTAGCTATACTGAGCCAGCTACGGGTATCAATTACGTCTCTGATTCCAATTACGTCCAAACTGGTTTGGCCATAACTTTACCACCAAGTCGTCGTTCCAGTACTCTCCAGAAACAACTATGGAGCCTTAGAAGCTTTCCTGATGGGACAAGGAACTGCTATACCATTAAACTCAAACTTGGCACCAAGTATTTGATTCGAGCAAGTTTCCTGTATGCAAATTATGATAATCAAAGCACCACTCCAGAGTTCGATCTATATTTTGGACCTGATTTTTGGGTGACCGTGAAATTTGGAGACAGCATAAACAATATTATCGAGGAGGAGATCATTCATATTGCAATTTCAAATCAAGCGCAGGTTTGTCTTGTGAACAATGGAAATGGGGTTCCTTTTCTTTCAGCCTTGGAGCTAAGGCCATTGCCAAACACCACTTATGTGACTATAAGTGGCTCATTATCAACGTTATTTCGGCTCGACATTGGTGCTCCAAACGATACATTCATCCGATTTCCAGACGACATATATGATCGTGTTTGGAGTCCACCAACTCCACTCGTGAAATGGACTCCAATAACCGCTTCACTCCCGATTAACAACAACGATTCCCCTGGTTTCATGGCACCCTCTAAGGTGTTGAGCACGGCCTCCACAGTGATAAATGCAAGTGCACCAATGGAGTTTTATTGGGACGATGTTAATGGACCCAACCAATACTACGTATATATGTATTTTGCTGAACTACAAGAGCTCAAAGCCAACCAATCCAGGCTATTCAAGATCTATCTAAACGACCAGCTTTGGGTAGCCGACAATATTCTAGTCAGTTATCTAACGGAGAATGTTGTGCGTAGCATAGCTCCCTTGACTCTTAATGATACGTATGACTTTAAATTGATCATGTCCGAAGGGTCAACTCTTCCGCCCATCCTGAATGCAATTGAGATATACAAAGTGATGAACTTTCCACAGCTCACAACAGAACAAGATGATGTTGATGGTATTAAATCCATTAAGAACGATTATGGGGTTACAAAAAACTGGCAAGGAGATCCATGTGCCCCTAAAATGTTTGCTTGGCAGGGTATCAACTGTAGCTATGATGCTTCAAATCCTCCAAGAATCACAGGGCTAGACTTATCGTCCAATGGATTGACTGGCGAAATTTCAGCCAACATATCAAGTCTTGCAAAGCTCGCTTTTTTGGATTTGTCAAATAATAACTTGAGTGGAGCGGTGCCTGATTTTCTTGCTGAAATGCCACTGTTGACTGTTATAGATTTATCTGGAAACAATCTATCAGGCCAAGTTCCTGCCTCACTTATTGACAAAAGGAACAAAGGCTCCCTTTCATTGAGTATGGAGGGAAACCCGTATTTAGATGGGACAAGTCCGAGTGAAAAGAAGAAGAAGAATAACATAGTAGTTCCAATAGTAGCAGCGGTTGGGGGAGCTCTCATCATTTTAGCATTGATTTTAGCTTCTATTTACTTCATTCGACGCAAACGAAGTTCTAAAGGTGGTACAGGCCCAAGCCTAATGGAGCCCCATTCACCAATAAACTCTGAAGTTCAGCTTAACCCACATGAGCCATTACAGACACCAAGTCGCCAACTTTCCTACTCAGACATCTTAAAAATGACCAATAATTTCGGTAGACTATTGGGTGAAGGTGGGTTTGGAAAGGTTTATTATGGTGTCATGGGTAACACTGAAGTGGCTGTAAAGATGCTATCTCCAAAATCAGCTCAAGGGTATCGAGAATTTCAAGCAGAGGTCGATCTTCTGTTGAGAGTTCATCACAGAAACTTAACTGGCCTGGTTGGATATTGCAATGAAGGGGAAACAAAAATGGGGCTTGTCTATGAATACATGGCCAAAGGAAACCTAGGATCAGTGCTTTCTGATGGAAGAGTTGTTTTAAGGTGGGAAGAAAGGCTTCAAATAGGATTGGATTCAGCACAAGGATTGGAATATCTACACAATGGTTGTAGGCCTCCAATTATCCATAGAGATATCAAATCATGTAACATTCTATTGAATGAGTATTTACAAGCAAAACTTGCTGATTTTGGCCTCTCAAGAGCTTTTCCAATGGAGGGAGGTGCCACTCATGTGACGACGAAGGTGGTTGGAACTCCTGGCTATCTTGATCCAGAGTATTATACGTCATACAAATTGACTGAGAAGAGCGATGTTTATAGCTTTGGAATTGTTATTCTGGAGCTCATCACGGGAAGACCTGTACTAGTGAAAACTAGTGAGAAAAGCCACATTATTCAATGGGTTGATTCCAACATTAACCAAGGCGATATCTACTCTATAATTGATCCGAAAATAAAAGACGATTGCAATACTAACTCGGTGTGGAAAGCTGTAGACATAGGAATGTCTTGCACTGCTCGTAACCCTATAAATAGGCCGACTATGAGTCACGTTGTAACCGAGCTCAAAGAATGTCTAAACCTCGAGTTAAATCAGAGAGGTCATCAAATTGACTCTGCTACCACGATCTCCTCAAACTTCCATTCCGAGATGGGCCCTATGGCAAGATTCTTCAACGCCTTCTTTCTTGCCTTTCTCGCCACTTCTTTTGTTCTGTATCTGGTTCATGCTCAAACCCAACAAGGCTTCATCAGTATTGATTGTGGGTCTAACTCTAGTTATACTGAACCAACTACGGGTATAGATTATGTCTCTGATTCTAACTACGTGGAAACTGGGTTGGTATCTAGCATATCATCAGATTATACACTGGATACCCTTCTGCAACAACTATGGAATCTAAGAAGCTTTCCTGAAGGAATAAGGAACTGCTATACCATTCCAGTGAAGCCTGGCACCAAGTATTTGATTCGTTCCAGTTTCTTGTATGCAAATTATGATGCCAAAAATAGCACTCCTACATTTGATATATATTTTGGACCCAACTTTTGGACAACGGTAACACTACCAAAGGTACAGACTATTATAGATGTGGAGATCATTCACATCACAACGTCAAATCAAGTTCAGGTTTGCCTTGTCAACACAGGGAATGGAGTACCCTTCATTTCAGCCATAGAGTTGAGGCCATTGCCAAATACCAGTTACGTTACCCTGAGTGGATCATTGACAGCCTTCTTACGCTTGGACGTTGGTGCTCCAAACGATACTTTCATTCGATTTCCAGATGATGTATACGATCGTGTTTGGAGTCCACTAACTCCAATGGTCAAATGGACTCCCATAAGTACTACACTTTTGAAGTCGATTAACAACGAAGATGTTCTTGGTTTTAAAGCACCTGCTAAAGTGTTAAGTACGGCCTCCACAGTAATAAATGCAAGTGCACCAATGGAATTTTCTTGGGGCGATATTGATATCACAACCCAGTACTATGTATACATGTACTTTGCTGAACTTCAAGAGCTCAAAGCCAATCAGTCTAGATCATTCAATATCTATGTGAATGACAAGCTTTGGATAAACGAGAGGATTTCCCCTGTTTATCTATCAGAATTGGTAGGTCATAGCATAACTCCCTTTACTAACAATGATACATATGACTGTAAATTGATCATGTCCGAAGGGTCAACTCTTCCGCCCATCCTGAACGCAATTGAGATATACAAAGTGATGAACTTCACACAACCCACAACAGAACAAGATGACGTTGATGCCATTGAATCCATTAAGAATAATTACGGGGTTACAAAAGACTGGCAAGGGGATCCATGTGCCCCCAAAATGTTTGCTTGGCAGGGTGTCAACTGTAGTCATGATGCTTCAACTCCTCCAAGAATCACAGGGCTAGATTTATCGTCGAGTGGATTGACTGGACAAATTTCAGCCAACATATCAAATCTAGCAAAGCTAGTGGTTTTGGATTTGTCAAATAATAGCTTAAGTGGACCGGTGCCTGATTTTCTTGTTGGAATGTCATCGTTGACCGTTATAAACTTATCCGGAAACAACCTATCAGGACTGATTCCTGCTGCACTTATTGACAGAAAGAACAAAGGCTCTCTTTCATTAAGTGTGGAGGGAAACCCGAATCTGCATGAGACAACAAGTGAAAAGAAGAAGAATAACATAGTAGTTCCTATAGTTGCAGCAATTGGTGGCGCTATCATCATTATAATATTGATTTTAGCTTATGTTTACTTCATTCGACGGAAAAGAAGTTCTAAAGGTCCAACCATCGCGGACCCCCATTCACCAGTAAATTCTGAAGTTGAGCTTCATCCACATGAGCCATTACGGACACCAAATCGCCAACTTTCCTACACAGACATCTTAAAAATGACCAATAATTTCAGTAGACTATTGGGTGAAGGTGGGTTCGGAAAGGTATATTATGGTGTCATGGGTAACAGTGAAGTGGCAGTAAAGATGCTATCTCCAAAATCAACTCAAGGGTATCAAGAATTTCAAGCAGAGGTCGATCTTCTTTTGAGAGTTCATCACAGAAACTTAACTAGCCTGGTTGGATATTGCAATGAAGGGGAGGCAAGAATGGGACTTGTCTATGAATACATGGGCAAAGGAAATCTAGGATCAGTGCTTTCTGGTGGAAGAGGAAAAGTTTTAAGATGGGAAGAAAGACTTAAAATAGCATTGGATTCAGCACAAGGATTGGAATATTTACATGATGGTTGTAGGCCTCCAATTATTCACAGGGACATCAAAACAAGCAACATTTTATTGAATGAGTATTTACAAGCAAAACTTGCTGACTTTGGCCTATCAAGAGCATTTCCTAATGAAGGCGGTGCCACTCATGTGACGACGAGAGTGGTTGGAACTCCTGGTTACCTTGATCCAGAGTATTACTCATCATACAAATTGACAGAGAAGAGCGATGTTTACAGCTTTGGAATTGTTATTCTAGAACTCATCACAGGAAGACCGGTACTAGTGAAAACTAGTGAGAAAAGTCACATTATTCAGTGGGTTGATTCCAACATCAACCAAGGCGACATCTACTCTATAATTGATCCCAACATAAAAGACGACTGCAATACTAACTCCGTGTGGAAAGCAGTAGACATAGGAATGTCTTGCACGGCTCGTAATCCAATAAATAGGTTGACAATGAGTCAGGTTGTAAGCGAGCTCAAAGAATGTCTAAACCTTGAGTTAAATCAAAGTGACCGTCAAGAACATAAGACTATTTTATTACAGCACATGAGCTATGGAACAAGTCGAAGTTCGTGGGGGCAGAGGATCCCATCTGACCTTATTTTCCATCTCGACATCTCAACAAATTTGGCTGGTTTAATAATACCAAGCTCAACCTATAGAATAATTGAGTTCATCTCTAGGACGTAG 5424 41.21 MAKLKAFLSAFIATLPLLHLVHAQTQQGFISIDCGSNSSYTEPATGINYVSDSNYVQTGLAITLPPSRRSSTLQKQLWSLRSFPDGTRNCYTIKLKLGTKYLIRASFLYANYDNQSTTPEFDLYFGPDFWVTVKFGDSINNIIEEEIIHIAISNQAQVCLVNNGNGVPFLSALELRPLPNTTYVTISGSLSTLFRLDIGAPNDTFIRFPDDIYDRVWSPPTPLVKWTPITASLPINNNDSPGFMAPSKVLSTASTVINASAPMEFYWDDVNGPNQYYVYMYFAELQELKANQSRLFKIYLNDQLWVADNILVSYLTENVVRSIAPLTLNDTYDFKLIMSEGSTLPPILNAIEIYKVMNFPQLTTEQDDVDGIKSIKNDYGVTKNWQGDPCAPKMFAWQGINCSYDASNPPRITGLDLSSNGLTGEISANISSLAKLAFLDLSNNNLSGAVPDFLAEMPLLTVIDLSGNNLSGQVPASLIDKRNKGSLSLSMEGNPYLDGTSPSEKKKKNNIVVPIVAAVGGALIILALILASIYFIRRKRSSKGGTGPSLMEPHSPINSEVQLNPHEPLQTPSRQLSYSDILKMTNNFGRLLGEGGFGKVYYGVMGNTEVAVKMLSPKSAQGYREFQAEVDLLLRVHHRNLTGLVGYCNEGETKMGLVYEYMAKGNLGSVLSDGRVVLRWEERLQIGLDSAQGLEYLHNGCRPPIIHRDIKSCNILLNEYLQAKLADFGLSRAFPMEGGATHVTTKVVGTPGYLDPEYYTSYKLTEKSDVYSFGIVILELITGRPVLVKTSEKSHIIQWVDSNINQGDIYSIIDPKIKDDCNTNSVWKAVDIGMSCTARNPINRPTMSHVVTELKECLNLELNQRGHQIDSATTISSNFHSEMGPMARFFNAFFLAFLATSFVLYLVHAQTQQGFISIDCGSNSSYTEPTTGIDYVSDSNYVETGLVSSISSDYTLDTLLQQLWNLRSFPEGIRNCYTIPVKPGTKYLIRSSFLYANYDAKNSTPTFDIYFGPNFWTTVTLPKVQTIIDVEIIHITTSNQVQVCLVNTGNGVPFISAIELRPLPNTSYVTLSGSLTAFLRLDVGAPNDTFIRFPDDVYDRVWSPLTPMVKWTPISTTLLKSINNEDVLGFKAPAKVLSTASTVINASAPMEFSWGDIDITTQYYVYMYFAELQELKANQSRSFNIYVNDKLWINERISPVYLSELVGHSITPFTNNDTYDCKLIMSEGSTLPPILNAIEIYKVMNFTQPTTEQDDVDAIESIKNNYGVTKDWQGDPCAPKMFAWQGVNCSHDASTPPRITGLDLSSSGLTGQISANISNLAKLVVLDLSNNSLSGPVPDFLVGMSSLTVINLSGNNLSGLIPAALIDRKNKGSLSLSVEGNPNLHETTSEKKKNNIVVPIVAAIGGAIIIIILILAYVYFIRRKRSSKGPTIADPHSPVNSEVELHPHEPLRTPNRQLSYTDILKMTNNFSRLLGEGGFGKVYYGVMGNSEVAVKMLSPKSTQGYQEFQAEVDLLLRVHHRNLTSLVGYCNEGEARMGLVYEYMGKGNLGSVLSGGRGKVLRWEERLKIALDSAQGLEYLHDGCRPPIIHRDIKTSNILLNEYLQAKLADFGLSRAFPNEGGATHVTTRVVGTPGYLDPEYYSSYKLTEKSDVYSFGIVILELITGRPVLVKTSEKSHIIQWVDSNINQGDIYSIIDPNIKDDCNTNSVWKAVDIGMSCTARNPINRLTMSQVVSELKECLNLELNQSDRQEHKTILLQHMSYGTSRSSWGQRIPSDLIFHLDISTNLAGLIIPSSTYRIIEFISRT 1807
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 397341 406587 + CmaCh01G000860.1 Cma01g00086 285779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00086 1807 ProSitePatterns Protein kinases ATP-binding region signature. 592 613 IPR017441 GO:0005524
Cma01g00086 1807 Pfam Malectin-like domain 918 1243 IPR024788 -
Cma01g00086 1807 Pfam Malectin-like domain 32 356 IPR024788 -
Cma01g00086 1807 CDD STKc_IRAK 592 856 - -
Cma01g00086 1807 Gene3D Phosphorylase Kinase; domain 1 568 661 - -
Cma01g00086 1807 Gene3D Phosphorylase Kinase; domain 1 1451 1543 - -
Cma01g00086 1807 Gene3D - 1076 1244 - -
Cma01g00086 1807 Gene3D - 190 357 - -
Cma01g00086 1807 Pfam Protein tyrosine and serine/threonine kinase 588 854 IPR001245 GO:0004672|GO:0006468
Cma01g00086 1807 Pfam Leucine rich repeat 411 470 IPR001611 GO:0005515
Cma01g00086 1807 Pfam Leucine rich repeat 1298 1357 IPR001611 GO:0005515
Cma01g00086 1807 SUPERFAMILY Protein kinase-like (PK-like) 564 854 IPR011009 -
Cma01g00086 1807 SMART serkin_6 586 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00086 1807 SMART serkin_6 1468 1741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00086 1807 ProSitePatterns Protein kinases ATP-binding region signature. 1474 1495 IPR017441 GO:0005524
Cma01g00086 1807 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1588 1600 IPR008271 GO:0004672|GO:0006468
Cma01g00086 1807 Pfam Protein kinase domain 1471 1735 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00086 1807 PANTHER OS07G0107800 PROTEIN-RELATED 912 1748 - -
Cma01g00086 1807 PANTHER INSENSITIVE 1-ASSOCIATED RECEPTOR KINASE 1, PUTATIVE-RELATED 912 1748 - -
Cma01g00086 1807 PANTHER INSENSITIVE 1-ASSOCIATED RECEPTOR KINASE 1, PUTATIVE-RELATED 26 864 - -
Cma01g00086 1807 MobiDBLite consensus disorder prediction 552 570 - -
Cma01g00086 1807 SUPERFAMILY Protein kinase-like (PK-like) 1445 1737 IPR011009 -
Cma01g00086 1807 SMART LRR_typ_2 1320 1343 IPR003591 -
Cma01g00086 1807 SMART LRR_typ_2 1344 1367 IPR003591 -
Cma01g00086 1807 SMART LRR_typ_2 433 456 IPR003591 -
Cma01g00086 1807 SMART LRR_typ_2 457 481 IPR003591 -
Cma01g00086 1807 PANTHER OS07G0107800 PROTEIN-RELATED 26 864 - -
Cma01g00086 1807 Gene3D Ribonuclease Inhibitor 371 494 IPR032675 -
Cma01g00086 1807 Gene3D Ribonuclease Inhibitor 1256 1384 IPR032675 -
Cma01g00086 1807 MobiDBLite consensus disorder prediction 1429 1452 - -
Cma01g00086 1807 ProSiteProfiles Protein kinase domain profile. 586 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00086 1807 CDD STKc_IRAK 1474 1739 - -
Cma01g00086 1807 Gene3D Transferase(Phosphotransferase) domain 1 1544 1764 - -
Cma01g00086 1807 Gene3D Transferase(Phosphotransferase) domain 1 662 880 - -
Cma01g00086 1807 SUPERFAMILY L domain-like 395 490 - -
Cma01g00086 1807 MobiDBLite consensus disorder prediction 543 570 - -
Cma01g00086 1807 ProSiteProfiles Protein kinase domain profile. 1468 1741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00086 1807 ProSitePatterns Serine/Threonine protein kinases active-site signature. 705 717 IPR008271 GO:0004672|GO:0006468
Cma01g00086 1807 SUPERFAMILY L domain-like 1282 1377 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00082 Cma-Chr1:373554 Cma01g00086 Cma-Chr1:397341 1.05E-112 dispersed
Cma01g00086 Cma-Chr1:397341 Cma08g00746 Cma-Chr8:4478596 0 dispersed
Cma04g00248 Cma-Chr4:1211977 Cma01g00086 Cma-Chr1:397341 3.54E-16 dispersed
Cma17g00757 Cma-Chr17:6108001 Cma01g00086 Cma-Chr1:397341 1.34E-146 dispersed
Cma01g00085 Cma-Chr1:386258 Cma01g00086 Cma-Chr1:397341 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68240 PF12819 Malectin_like 1.30E-107 CL0202 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00086 - - minc:123206351 1559.66