Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00090 ATGGGTTGTGTTCTGGGAAAGTGTTGTACTTGCAATCGCTACACGGCGTCTTCTGAAAGCGATATGGCCCAATTCTGTGATGCCTCGCCGTGTGGTTCACGAGGGAAACATATACTAACGGGAAGGTCATTGGAGTGTGTTCGTGTGCCTTCTCACAACTACTATATGGAGTACTCCCTCCTGACGCAGCGCGGCTACTACCCTGATTCCCCTGATAAAGGAAACCAAGATAGCGTCTGTGTTAGTACGAAAATTCGAGGTAACCCAAATATCCATTTCTTCGGTGTTTTTGATGGGCATGGTCAATACGGATCGGATTGTTCGAATTTCGTTAAGGAAAGGGTTGTGCAAATACTATGTAAAGATTCAGCGTTGTCGCAAGATCCCGTTAGAGCCTATAATTCGGCCTTTTTTACCACGAACGATGAATTGCATAAGAGCAAGATCGATGATTCCTTGAGTGGCACAACTGCTATTACTGTTCTTGTTGTTGGGAATATGCTTTACGTTGCGAATGTGGGTGATTCGAGAGCAGTGATAGCTGTTAAAGATGGGAATCGAATTATTGCCAAGGACATGTCCAATGATCAAACACCTTTTAGGAAGGATGAATGCGAGAGAGTAAAGCTGGCCGGGGCTACTGTGATGACAATTGATCAAATTGAAGGGCATAAGGATCCGGGTATTCAGATATGGGGTGATGAGGAGAGCCAGGGAAATGACCCACCTCGGCTGTGGTTGCCTAATAGCTTCTATCCTGGCACTGCATTCACTCGGAGTGTTGGAGATAGTACAGCCGAGAAGATTGGTGTCACTGCTGTCCCTGAGATTTCAGTACTTCAGCTCACTCAAAACCATCTTTTCTTTGTTGTTGCAAGCGATGGAGTGTTCGAGTTCCTTACGAGTCAAGCAATTGTCGATATGGCCGCGAGGTACACGGATCCACGAGATGCGTGTGCTGCCATTGCTGGAGAGTCATACAAGCTATGGTTGAGGCATGAAAACCGGACAGATGATATAACAATCATCATCGTTCACATCAAAGGCATCTCTGCTTCAGATGCTGTTGCAACTGCTGGGCTGAACGGGGTCCATTCAAGGCATAGAATTATCGAGCGGGGAACCTCCGAGAGATCAGCCTTCGCTGGAAGTTCGGAGGCCTTTCAATCCATCAGAAGTGATTTCTCAGATGTGTCAATCTCCCAGCATCATGTGGGTTTGATGCACAGAAGCACAGCAATTGTAGTTCCATCTCCTTCTCAGCACCGACCATTGGAAGTGGAAGTGGGCTAA 1293 46.87 MGCVLGKCCTCNRYTASSESDMAQFCDASPCGSRGKHILTGRSLECVRVPSHNYYMEYSLLTQRGYYPDSPDKGNQDSVCVSTKIRGNPNIHFFGVFDGHGQYGSDCSNFVKERVVQILCKDSALSQDPVRAYNSAFFTTNDELHKSKIDDSLSGTTAITVLVVGNMLYVANVGDSRAVIAVKDGNRIIAKDMSNDQTPFRKDECERVKLAGATVMTIDQIEGHKDPGIQIWGDEESQGNDPPRLWLPNSFYPGTAFTRSVGDSTAEKIGVTAVPEISVLQLTQNHLFFVVASDGVFEFLTSQAIVDMAARYTDPRDACAAIAGESYKLWLRHENRTDDITIIIVHIKGISASDAVATAGLNGVHSRHRIIERGTSERSAFAGSSEAFQSIRSDFSDVSISQHHVGLMHRSTAIVVPSPSQHRPLEVEVG 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 416403 419503 - CmaCh01G000900.1 Cma01g00090 285783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00090 430 CDD PP2Cc 65 347 IPR001932 -
Cma01g00090 430 ProSiteProfiles PPM-type phosphatase domain profile. 57 347 IPR001932 -
Cma01g00090 430 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 36 428 - -
Cma01g00090 430 SUPERFAMILY PP2C-like 45 349 IPR036457 -
Cma01g00090 430 Gene3D - 50 349 IPR036457 -
Cma01g00090 430 SMART PP2C_4 57 345 IPR001932 -
Cma01g00090 430 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 36 428 - -
Cma01g00090 430 ProSitePatterns PPM-type phosphatase domain signature. 93 101 IPR000222 GO:0043169
Cma01g00090 430 Pfam Protein phosphatase 2C 85 322 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00090 Cma-Chr1:416403 Cma17g00286 Cma-Chr17:1524974 0 dispersed
Cma01g00090 Cma-Chr1:416403 Cma14g01665 Cma-Chr14:12453529 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00090 - - csv:101212684 697.967