Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00091 ATGTCGTGGCAATCTTACATTGATGATCAATTGATGTATGATGTCGATGGCCATCATCTCCAAGCCGCTGCTATAATCGGGAACGACGGTGCTGTTTGGGCTCAGAGCCCCGCTTTCCCCAAGGCGTTTTTGATCCATCAGGCTCCGTTTTTTGATTGCTTTGTTGAGATGATTCCAGATTATTTTCTGCTGTTTTGGTTCTTGTTAACTTGCAATGAGCATATGAATAGTTGTGTTGGGATTGGAAACTTCGTGCTCGCAATTGTTCTTATTTTCAAGCCTGAAGAGATGTCTGCCATTATGAAGGATTTTGATGAGCCTGGATCTCTTGCCCCGACTGGTTTGCACCTTGCTGGATCAAAGTACATGGTTATCCAGGGGGAATCTGGAGCTGTTATCCGTGGAAAGAAGGGCACTTCTGGGCTCACTGTAAAGAAAACAAACCAAGCACTCGTTTTTGGGTTATATGATGAACCCATGACTCCAGGACAGTGCAACATGATTGTCGAGAAGTTGGGAGATTACCTGATTGATCAAGGCATGTAA 546 44.51 MSWQSYIDDQLMYDVDGHHLQAAAIIGNDGAVWAQSPAFPKAFLIHQAPFFDCFVEMIPDYFLLFWFLLTCNEHMNSCVGIGNFVLAIVLIFKPEEMSAIMKDFDEPGSLAPTGLHLAGSKYMVIQGESGAVIRGKKGTSGLTVKKTNQALVFGLYDEPMTPGQCNMIVEKLGDYLIDQGM 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 420491 422064 + CmaCh01G000910.1 Cma01g00091 285784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00091 181 Pfam Profilin 1 181 IPR005455 GO:0003779
Cma01g00091 181 SMART prof_2 1 181 IPR005455 GO:0003779
Cma01g00091 181 PANTHER PROFILIN 1 181 IPR005455 GO:0003779
Cma01g00091 181 Gene3D Dynein light chain 2a, cytoplasmic 1 181 - -
Cma01g00091 181 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Cma01g00091 181 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Cma01g00091 181 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Cma01g00091 181 PANTHER PROFILIN-A 1 181 - -
Cma01g00091 181 SUPERFAMILY Profilin (actin-binding protein) 2 181 IPR036140 -
Cma01g00091 181 CDD PROF 2 181 IPR005455 GO:0003779
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00091 Cma17g00758 CCT
Cma01g00091 Cma08g00743 CCT
Cma01g00091 Cma08g00743 ECH
Cma01g00091 Cma17g00758 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00091 Cma-Chr1:420491 Cma14g01287 Cma-Chr14:10164737 5.93E-75 dispersed
Cma01g00091 Cma-Chr1:420491 Cma17g00758 Cma-Chr17:6120509 1.11E-65 wgd
Cma01g00091 Cma-Chr1:420491 Cma05g01373 Cma-Chr5:10326136 9.33E-48 wgd
Cma01g00091 Cma-Chr1:420491 Cma08g00743 Cma-Chr8:4459692 1.05E-63 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00091 K05759 - csv:101218089 225.328