Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00093 ATGGGAAAGGCGATGAGATTGTTGAGGGCCTTATTGGGAATGAAGAGAGACAAGAATGCCGATCACAATTCATGTTTACCAGCCGATGGTGAAATCAAAGAGAGGAATCGGTGCAGTTTTTCAAAGTCCGGGAAGGAATTCACCGGAGAAGTTCAGAAGCTGCCACCGTCGCCGAGAATGGCGGATGCTGATTGCCAGAGATCTTATCCTGCAGAGGAACACCGCAATGAGCATGCGATCGCTGTCGCAGCAGCATCGGCTGCTGCTGCTGATGCTGCTGTGGCGGCGGCTCAAGCGGCGGTGGCTGTTGTTATGCTTACCAACCAAACTAGAGGAGGTGGTTTGTTCAATGGAGGGAAACTGATTTCGGCCGCTCTTACAATTCAAAAGGTTTTCAGAGGCTTTTTGGCGAGGAAGGCACTTCAAGCATTAAGAAGTTTGGTCAAATTACAAGCTTTAGTCAGAGGCTTTCTCGTTCGAAAACGAGCAGCCGCCACATTACAGAGCATGCAAGCTCTAATCCGAGCACAAACCACCGTCCGATCGCAACGAGCTCGTCGTTCAAACAACAAAGAGAACAAATCCCTGCTGGAAAAGTCTCCGGATATCGGCGACGTGAGATTTCTTTTCTCTGACGAAATCGAAGACCCCAAAATCGTGGATATCGACAAACTATTCCAGAAACCCAAATCGAGGTCCCGTCATTTCAACAATCTCCTCTCAGAACTCTCCGACGACCGACCGTCGCCGTACCTCTGGACAATGGCGTCGCCGGCCAGGTTCTCAGGCGGGGAGTGGTGTTTCACCGGCGGAGAGGAGTGCGGGAGGATGTTGACAGCCCAGCGCACGCCGCGTGTGCGGAACTACGGGTGGAAGACTGCGGCGGCGACAGCGACGCCGGCAAGGGTGGAGTACGGCGAAGGGTTTTTCCGTCAGTATACGAATTTTCCGAATTATATGGCGAGTACGAAATCGTTTAAGGCGAAATCGAGGTCGCGAAGCGCGCCGAAACAGAGGGCGGAGGGTTGGACGAAGAACAGAGTGGCGTTGAATGAGATTATGGGAGGCAGGAACAGCACCGGCGGCGTGAGAATGCAGAAATGTTGTCATCGGATTGAAGGAGATGAAGGGTTCGATGAGTTCTGA 1146 52.44 MGKAMRLLRALLGMKRDKNADHNSCLPADGEIKERNRCSFSKSGKEFTGEVQKLPPSPRMADADCQRSYPAEEHRNEHAIAVAAASAAAADAAVAAAQAAVAVVMLTNQTRGGGLFNGGKLISAALTIQKVFRGFLARKALQALRSLVKLQALVRGFLVRKRAAATLQSMQALIRAQTTVRSQRARRSNNKENKSLLEKSPDIGDVRFLFSDEIEDPKIVDIDKLFQKPKSRSRHFNNLLSELSDDRPSPYLWTMASPARFSGGEWCFTGGEECGRMLTAQRTPRVRNYGWKTAAATATPARVEYGEGFFRQYTNFPNYMASTKSFKAKSRSRSAPKQRAEGWTKNRVALNEIMGGRNSTGGVRMQKCCHRIEGDEGFDEF 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 425355 426686 - CmaCh01G000930.1 Cma01g00093 285786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00093 381 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 163 IPR027417 -
Cma01g00093 381 MobiDBLite consensus disorder prediction 43 66 - -
Cma01g00093 381 Gene3D - 119 174 - -
Cma01g00093 381 ProSiteProfiles IQ motif profile. 145 172 IPR000048 GO:0005515
Cma01g00093 381 ProSiteProfiles IQ motif profile. 121 149 IPR000048 GO:0005515
Cma01g00093 381 PANTHER IQ-DOMAIN 5-RELATED 1 372 - -
Cma01g00093 381 SMART iq_5 143 164 IPR000048 GO:0005515
Cma01g00093 381 SMART iq_5 120 142 IPR000048 GO:0005515
Cma01g00093 381 Pfam IQ calmodulin-binding motif 146 162 IPR000048 GO:0005515
Cma01g00093 381 Pfam IQ calmodulin-binding motif 123 141 IPR000048 GO:0005515
Cma01g00093 381 Pfam Protein of unknown function (DUF4005) 283 348 IPR025064 -
Cma01g00093 381 PANTHER - 1 372 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00093 Cma17g00759 CCT
Cma01g00093 Cma08g00741 CCT
Cma01g00093 Cma17g00759 ECH
Cma01g00093 Cma08g00741 ECH
Cma01g00093 Cma14g01288 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00093 Cma-Chr1:425355 Cma14g01742 Cma-Chr14:12751382 8.02E-34 dispersed
Cma17g00215 Cma-Chr17:1108378 Cma01g00093 Cma-Chr1:425355 7.18E-25 dispersed
Cma01g00093 Cma-Chr1:425355 Cma10g00673 Cma-Chr10:3057232 5.69E-71 wgd
Cma01g00093 Cma-Chr1:425355 Cma11g00652 Cma-Chr11:3171146 1.32E-71 wgd
Cma01g00093 Cma-Chr1:425355 Cma14g01288 Cma-Chr14:10183858 8.07E-173 wgd
Cma01g00093 Cma-Chr1:425355 Cma17g00759 Cma-Chr17:6124935 1.99E-71 wgd
Cma01g00093 Cma-Chr1:425355 Cma08g00741 Cma-Chr8:4454707 6.43E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00093 - - csv:101221170 473.781