Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g00095 | ATGTTTTCGTCCATGAATCCTGTGCGAATTCGCACTTCGTTCTTCCTTCTCTACTTCTCCGTTCTTCTTCAACATCATTCCCTCTGTTCCTCATCTCCCTCGCCCTTAACTTGTACGGATACAACCCGTCTATGCACCTCGTTTCTGGCTTTCAAGCCTCAGCCAAATCAGACGCTTTCTGTGATCCAGAGTATGTTCGACGTATTGCCTGAAGATGTCACTGTCGAAGGCAATGGCCGGGACTATGTGTTCATCAGGAAGAATTGCTCCTGTGCCTCTGGATTGAAGAAATACATCACCAATACCACTTTTACCATCAAATCGAATCGGGGTTTTGTGTATGACATAGTCTTGGAAGCGTATGATGGGCTTGCGCTGTTGCCCAACACCACCCGAATGGCGAGGAACGGCGCTGTTGTGTCTTTGCGGCTGTTTTGTGCCTGTTCAAGTGGGCTGTGGAACTATTTGATGAGCTATGTGATGACAGATGGCGATACCATTCAGTCTTTGGCTAGCCGATTTGGGGTCAGTATGGATAGCATTGAGTCGGTGAATGGAATTCAAAATCCCAGCAATGTCACTGTGGGCGCTTTGTATTATATTCCCCTGAATTCGGTTCCTGGTGATCCTTATCCATTGGAGACGCACATTTCTCCTGCTCCTACTCCTGCTCCTTCCTATTCTCTCAACAATTTCTCAGATAATGCTGAGAACTCCAAGCGTCATCCTCCTTATATATGGATTGTTGGGAGTTTGGGAATTATTCTTGTTCTGATTTTATTAGGCATAGGAGGTTATGCTTGTTGTAGGTGGTCGAAATGCTTTTCTAGATTAAGGAGTAGCCACTCCAAGGATCCTGGTGCCAAGGTTTCACACAAGTTCCATATTCTTGGGAAGTCAAGTTTCTGCTGTGCTTCAGGAAGGTATATTTGCTGTAGTTCTGCAGATTGGAAACAACCCAGCAGGGAGTCGAGCGATAACCAGAGTGCAATTCCAAAAGCTATTGAGAGCAATGTATTCAATGTAGACAAACCTGTGGTTTTCTCCTGCGAAGAAATATTTTCCACGACCGATGGTTTCTCCGAGTCGAGTCTGCTTGGCCATGGAACTTATGGTTCAGTGTATCATGGCATCCTGCGTGACCAGGAAGTTGCTATAAAGAGAATGACTGCAACAAAAACTAAAGAGTTTCTGGCAGAGATGAAAGTCCTCTGCAAGGTTCATCATGCAAACCTGGAATATGCTCAAAAAGGTCCACTCAAAAGTCATTTACATGATCCTCTGAACAAGGGCCATACATCACTCTCTTGGATTATGAGACTCCAAATTTCTTTGGACGTTGCGAGAGGTCTCGAATACATTCACGAGCACACTAAACCTCATTATGTCCATAGAGATATCAAGACAAGCAACATCTTACTTGATGGTTCATTTAGGGCGAAGATTTCTGACTTTGGGTTGGCCAAACTTGTTGGAAGAACCAATGAGGGTGAAGCTACAGTAACGAAAGTTGTGGGTACATATGGCTATCTGGCTCCCGAATATTTGAGTAACGGACTTGCCACAACTAAAAGCGACGTGTATGCTTACGGTGTTGTTATTTTTGAGCTTATATCTGGAAAGGAGGCAATCATACGAACTGAGGGCACGACTTTGAAAAATCCTGAAAGACGTTCGTTGGCATCCATTATGCTAGGTGTTCTTCGTAACACACCCGATCCTATGAATATGGGAAGTCTAAAAGATCAAGTTGATCCAAGTATGATGGATTTGTATCCCCATGACTGTCTATTCAAGGTGGCGATGTTGGGAAAGCAGTGTGTGGATGAGGATCCCATGTTACGACCGGACATGAAGGAAGTGGTAATATCGTTGTCACAGATCCTACTGTCTTCAATAGAGTGGGAAGCGACTCTAGCTGGTAACAGCCAAGGGAGGCTTCCGGCGGCGATTAGGATGCCGATGAGGGGGAAATCAGGGAAGAAGCCACTGAGGGATGTATCGAACCAAAAATACGGCCGAACTTCCTCCAAATCTGTCGCTACAGCCAAGAGAAAGGAAGATGATTACATGTCTAAGGTTGAAGAGCAAGATGATTCTCTCGATCGTCTCCTTCTGGTTCAGTCCGATCTCTCAGCGTTCACTAATCAGATTGATGAACTTGTTGTGAAAGCATTTGAACTGAAGGAAATGGGCAAACAAGGGAGGAAACAGATCGAATCTTTCACTCATATCTTATCTGATATGCTATCTTCTTTGAAGCCATGGGTTCCCAGACTTCAGAAGGTGCTCTCGTCTCCATCAAAAGGTATTGATGGTGATATAGAACAACCCTTGTCTAGTGAAAGCAATGTGATGGTTAACGATACGGAAAACAGTGTTATTGACAGCCCAGGCCAAGCTGAAGTTCGAGATCTGATCTCTCCTTCACCCCTCGTATCATGGCGTGCTGGATGCAATATTGAGAGAGGAAGACAATTGTTTTTACTCACACCTCTTCCTATTTCTAAATCACTCTCATCTAAACATGTGAAATATTATAAATCTGCACTTAGTGGAATGACTTCGAGCATACTCGAGGGCGCACAACCATGTTTTGTTGCATGTGCAGATTTAAACGAGAATGAACTTGAAGGTAAAATACTTGAGCCTGGTAAGCCTTCTGGTCCTGATTTAACAACACTAGGGGAGAATCTGCTTGAAGGTAATGGAATTGCGCCAAGTACTGGTAAGCCATCTGGGTCTAATTTAACTAAACTGGGGGAGAATTTGTTAGAAGGTAGTGGAATTGTGCTTAGTGGTGTTGAGCCTTCTGGGTCTGATATAGCACAAGTTGAGATAACTCATCAGCGTGGATTTGCTTCCCCACCTATGTTATCAAAGAAAAATTGCTCTATGCTAGTTATGACTCCCTGCTTAAAAATGTCGCCTCCAAAATCTTGTGTGCTGCTCGAACCCATTTCTGAGTCATCACATAAAGACAAAAAAATGGTTTATAAGGCCACACCTTTTCCCGTTGGGGTTCAGGATTACTCCTCTGGCGGTGACGCTTCTGATGGACTGGCTTTAAAGTACCCAGAACTCTTGGGAATTCAACAGGCTCACAAATTAGAAATTAGAAAGGAGGTTGAAGCCTCACCAGACTGGTTTATGTCACCTCCAAAAACATGTGTTTTACTGGAGCCGTCTGATTTTCATTCAGTGAAAAGTGCTGCTTGTTACGGATGTCAGGAAGCCAAGAAATCTTTCGGCGACGAAGGTCCAGTTGGGGTCAGCTTGCCGCACATAGATAGCACTCCCATGTTGAAGGAATGTGAAAGTGTATTTCGGGTTGGCAAACGTGCTGGCGAAGAGACTCTTAAAAAAGAACTCTGGCTGAAATTTGAAGCAGCATCAGCCAATCCATATCGTTTTGATCAAGCTCTTCAAAAGACATCAAAGAAAGGTTTCCTGGACATGCTGGACGAGTTGCGGAACTGCTGTTACAACTTGGAAGTGCGAACCGGGAAGGGCATTGCATTAGATGTTGCGCTTGTGCATTCCTCGGCC | 3549 | 44.41 | MFSSMNPVRIRTSFFLLYFSVLLQHHSLCSSSPSPLTCTDTTRLCTSFLAFKPQPNQTLSVIQSMFDVLPEDVTVEGNGRDYVFIRKNCSCASGLKKYITNTTFTIKSNRGFVYDIVLEAYDGLALLPNTTRMARNGAVVSLRLFCACSSGLWNYLMSYVMTDGDTIQSLASRFGVSMDSIESVNGIQNPSNVTVGALYYIPLNSVPGDPYPLETHISPAPTPAPSYSLNNFSDNAENSKRHPPYIWIVGSLGIILVLILLGIGGYACCRWSKCFSRLRSSHSKDPGAKVSHKFHILGKSSFCCASGRYICCSSADWKQPSRESSDNQSAIPKAIESNVFNVDKPVVFSCEEIFSTTDGFSESSLLGHGTYGSVYHGILRDQEVAIKRMTATKTKEFLAEMKVLCKVHHANLEYAQKGPLKSHLHDPLNKGHTSLSWIMRLQISLDVARGLEYIHEHTKPHYVHRDIKTSNILLDGSFRAKISDFGLAKLVGRTNEGEATVTKVVGTYGYLAPEYLSNGLATTKSDVYAYGVVIFELISGKEAIIRTEGTTLKNPERRSLASIMLGVLRNTPDPMNMGSLKDQVDPSMMDLYPHDCLFKVAMLGKQCVDEDPMLRPDMKEVVISLSQILLSSIEWEATLAGNSQGRLPAAIRMPMRGKSGKKPLRDVSNQKYGRTSSKSVATAKRKEDDYMSKVEEQDDSLDRLLLVQSDLSAFTNQIDELVVKAFELKEMGKQGRKQIESFTHILSDMLSSLKPWVPRLQKVLSSPSKGIDGDIEQPLSSESNVMVNDTENSVIDSPGQAEVRDLISPSPLVSWRAGCNIERGRQLFLLTPLPISKSLSSKHVKYYKSALSGMTSSILEGAQPCFVACADLNENELEGKILEPGKPSGPDLTTLGENLLEGNGIAPSTGKPSGSNLTKLGENLLEGSGIVLSGVEPSGSDIAQVEITHQRGFASPPMLSKKNCSMLVMTPCLKMSPPKSCVLLEPISESSHKDKKMVYKATPFPVGVQDYSSGGDASDGLALKYPELLGIQQAHKLEIRKEVEASPDWFMSPPKTCVLLEPSDFHSVKSAACYGCQEAKKSFGDEGPVGVSLPHIDSTPMLKECESVFRVGKRAGEETLKKELWLKFEAASANPYRFDQALQKTSKKGFLDMLDELRNCCYNLEVRTGKGIALDVALVHSSA | 1183 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 434823 | 442033 | + | CmaCh01G000950.1 | Cma01g00095 | 285788 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g00095 | 1183 | Gene3D | Transferase(Phosphotransferase) domain 1 | 416 | 638 | - | - | |
Cma01g00095 | 1183 | PANTHER | BNAA06G02020D PROTEIN | 37 | 644 | - | - | |
Cma01g00095 | 1183 | SMART | LysM_2 | 158 | 202 | IPR018392 | - | |
Cma01g00095 | 1183 | SMART | serkin_6 | 360 | 630 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma01g00095 | 1183 | SUPERFAMILY | Protein kinase-like (PK-like) | 341 | 625 | IPR011009 | - | |
Cma01g00095 | 1183 | Gene3D | Phosphorylase Kinase; domain 1 | 332 | 414 | - | - | |
Cma01g00095 | 1183 | Pfam | LysM domain | 163 | 196 | IPR018392 | - | |
Cma01g00095 | 1183 | Gene3D | LysM domain | 154 | 207 | IPR036779 | - | |
Cma01g00095 | 1183 | MobiDBLite | consensus disorder prediction | 654 | 689 | - | - | |
Cma01g00095 | 1183 | PANTHER | CHITIN ELICITOR RECEPTOR KINASE 1-RELATED | 37 | 644 | IPR044812 | GO:0019199|GO:0045087 | |
Cma01g00095 | 1183 | SUPERFAMILY | LysM domain | 157 | 202 | IPR036779 | - | |
Cma01g00095 | 1183 | CDD | LysM | 158 | 201 | IPR018392 | - | |
Cma01g00095 | 1183 | Pfam | Protein tyrosine and serine/threonine kinase | 364 | 623 | IPR001245 | GO:0004672|GO:0006468 | |
Cma01g00095 | 1183 | ProSiteProfiles | Protein kinase domain profile. | 360 | 630 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma01g00095 | 1183 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 462 | 474 | IPR008271 | GO:0004672|GO:0006468 | |
Cma01g00095 | 1183 | ProSiteProfiles | LysM domain profile. | 157 | 201 | IPR018392 | - | |
Cma01g00095 | 1183 | ProSitePatterns | Protein kinases ATP-binding region signature. | 366 | 387 | IPR017441 | GO:0005524 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g00095 | Cma14g01290 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00095 | Cma-Chr1:434823 | Cma04g01752 | Cma-Chr4:8816601 | 9.06E-100 | dispersed | |
Cma01g00095 | Cma-Chr1:434823 | Cma14g01290 | Cma-Chr14:10198619 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68241 | PF07714 | PK_Tyr_Ser-Thr | 8.30E-35 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g00095 | - | - | csv:101213624 | 1125.54 |