Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00099 ATGGCGGAGGCAAGCAATTCGAATTTAGAATCTGAGAGTACAGAGATCAAAAGGGGAAATCGAAAGCACCAAATTTACAGAGGCGTACGGAAGAGAAGTTGGGGCAAATGGGTGTCGGAGATTCGTCAGCCCAGGAAGAAATCTCGGATTTGGCTAGGGACTTTCACCACGCCGGAGATGGCAGCACGTGCACACGACGTGGCCCTGCTCAGCATCAAAGGCGATTCCGCTAAACCGATTCTCAATTTCCCTCAACTCGCCGGTTTGCTTCCCCGCCCGGTCTCCTTAATGCCCAGAGATATTCAGGCTGCGGCAGCCAAGGCGGCGGCGATGGTCGATTTTGATTCAACCATGCCCACAACTTCGTCGTCCAACGATGAAGAAGGGTCGGATGAATTGGGGGAGATTGTGGAATTGCCCAATATTGAAGAGGAAATCAGCGCTGAGTCGTGGAACAAATTCGAGTTGGTTGACTCGGTGGATTGGTGGGGGAATCCGCCGTACACAGTGGCGGAAACTGATTTCGTTGGAGGGTTTTCCTATCAGAGTACGATTCCGGTCATCTTCGACGGCGGCGATTGGGAATGA 588 52.38 MAEASNSNLESESTEIKRGNRKHQIYRGVRKRSWGKWVSEIRQPRKKSRIWLGTFTTPEMAARAHDVALLSIKGDSAKPILNFPQLAGLLPRPVSLMPRDIQAAAAKAAAMVDFDSTMPTTSSSNDEEGSDELGEIVELPNIEEEISAESWNKFELVDSVDWWGNPPYTVAETDFVGGFSYQSTIPVIFDGGDWE 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 455264 455851 + CmaCh01G000990.1 Cma01g00099 285792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00099 195 Pfam AP2 domain 26 74 IPR001471 GO:0003700|GO:0006355
Cma01g00099 195 Gene3D AP2/ERF domain 25 85 IPR036955 GO:0003700|GO:0006355
Cma01g00099 195 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Cma01g00099 195 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Cma01g00099 195 ProSiteProfiles AP2/ERF domain profile. 25 84 IPR001471 GO:0003700|GO:0006355
Cma01g00099 195 CDD AP2 24 84 IPR001471 GO:0003700|GO:0006355
Cma01g00099 195 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TINY-LIKE 6 182 - -
Cma01g00099 195 MobiDBLite consensus disorder prediction 1 23 - -
Cma01g00099 195 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 182 - -
Cma01g00099 195 SUPERFAMILY DNA-binding domain 25 85 IPR016177 GO:0003677
Cma01g00099 195 SMART rav1_2 25 90 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00099 Cma-Chr1:455264 Cma09g00635 Cma-Chr9:3002095 1.74E-49 dispersed
Cma01g00099 Cma-Chr1:455264 Cma10g00659 Cma-Chr10:2980345 2.89E-43 wgd
Cma01g00099 Cma-Chr1:455264 Cma11g00638 Cma-Chr11:3083677 3.00E-42 wgd
Cma01g00099 Cma-Chr1:455264 Cma12g01265 Cma-Chr12:9873149 1.47E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34221 PF00847 AP2 1.90E-12 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00099 K09286 - csv:101222354 303.908