Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g00099 | ATGGCGGAGGCAAGCAATTCGAATTTAGAATCTGAGAGTACAGAGATCAAAAGGGGAAATCGAAAGCACCAAATTTACAGAGGCGTACGGAAGAGAAGTTGGGGCAAATGGGTGTCGGAGATTCGTCAGCCCAGGAAGAAATCTCGGATTTGGCTAGGGACTTTCACCACGCCGGAGATGGCAGCACGTGCACACGACGTGGCCCTGCTCAGCATCAAAGGCGATTCCGCTAAACCGATTCTCAATTTCCCTCAACTCGCCGGTTTGCTTCCCCGCCCGGTCTCCTTAATGCCCAGAGATATTCAGGCTGCGGCAGCCAAGGCGGCGGCGATGGTCGATTTTGATTCAACCATGCCCACAACTTCGTCGTCCAACGATGAAGAAGGGTCGGATGAATTGGGGGAGATTGTGGAATTGCCCAATATTGAAGAGGAAATCAGCGCTGAGTCGTGGAACAAATTCGAGTTGGTTGACTCGGTGGATTGGTGGGGGAATCCGCCGTACACAGTGGCGGAAACTGATTTCGTTGGAGGGTTTTCCTATCAGAGTACGATTCCGGTCATCTTCGACGGCGGCGATTGGGAATGA | 588 | 52.38 | MAEASNSNLESESTEIKRGNRKHQIYRGVRKRSWGKWVSEIRQPRKKSRIWLGTFTTPEMAARAHDVALLSIKGDSAKPILNFPQLAGLLPRPVSLMPRDIQAAAAKAAAMVDFDSTMPTTSSSNDEEGSDELGEIVELPNIEEEISAESWNKFELVDSVDWWGNPPYTVAETDFVGGFSYQSTIPVIFDGGDWE | 195 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 455264 | 455851 | + | CmaCh01G000990.1 | Cma01g00099 | 285792 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g00099 | 195 | Pfam | AP2 domain | 26 | 74 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g00099 | 195 | Gene3D | AP2/ERF domain | 25 | 85 | IPR036955 | GO:0003700|GO:0006355 | |
Cma01g00099 | 195 | PRINTS | Ethylene responsive element binding protein signature | 26 | 37 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g00099 | 195 | PRINTS | Ethylene responsive element binding protein signature | 48 | 64 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g00099 | 195 | ProSiteProfiles | AP2/ERF domain profile. | 25 | 84 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g00099 | 195 | CDD | AP2 | 24 | 84 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g00099 | 195 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TINY-LIKE | 6 | 182 | - | - | |
Cma01g00099 | 195 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cma01g00099 | 195 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 6 | 182 | - | - | |
Cma01g00099 | 195 | SUPERFAMILY | DNA-binding domain | 25 | 85 | IPR016177 | GO:0003677 | |
Cma01g00099 | 195 | SMART | rav1_2 | 25 | 90 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00099 | Cma-Chr1:455264 | Cma09g00635 | Cma-Chr9:3002095 | 1.74E-49 | dispersed | |
Cma01g00099 | Cma-Chr1:455264 | Cma10g00659 | Cma-Chr10:2980345 | 2.89E-43 | wgd | |
Cma01g00099 | Cma-Chr1:455264 | Cma11g00638 | Cma-Chr11:3083677 | 3.00E-42 | wgd | |
Cma01g00099 | Cma-Chr1:455264 | Cma12g01265 | Cma-Chr12:9873149 | 1.47E-40 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34221 | PF00847 | AP2 | 1.90E-12 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g00099 | K09286 | - | csv:101222354 | 303.908 |