Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00106 ATGCTCGCCGACATGTCCAATAATAATAATCGCCTCGCTTTCACCAAAGATTTCTTCTCCTCTCCCGCTCTTTCTCTTACTCTCGCGGGGATTTTTCGCCGGGGTGAGATGGCGGAGAAGGGCGATGTTGAGATGGAGGAGGTTGACGATGGCAGTGGAGAAGTGCGGCGGGATGATGCGGCGGAGGTTAGTAGCGAGAACTTGGGACCGGTGAGATCGAGATCGGACGACGATTTCGAGGGCGGAGGAGTGCACGAGGAAAATGAAGAGGGGGATGGTGGATGTCTTGTAAAGAGAAGGAAGAAATATCATCGGCATACCACCGAGCAGATCAGAGAAATGGAGGCGCTATTTAAAGAATCGCCTCACCCAGATGAGAAGCAAAGGCAGCAGCTTAGCAAGAGATTAGGGCTTTCACCAAGGCAGGCTATTCAAGAGCGCCATGAAAACACATTGTTAAAAGCTGAAATGGAGAAACTTCGAGAAGAAAATAAAGCCATGAGAGAACTTACCAAGAAAAAAGTTGGCTGTCCAAACTGTGGCACTGCCAACGCTGCTGAAGACCATACTGCCTTCACAACTACGGAGCAATTGCGTATTAAGAATGCTAAGCTCAAAGCCGAGGTCGAAAAATTACGAGCAGCACTCGGAAAACACTCGCAATCATCGATCTCGCCTTCATATTCGTCTGGGAACGACCAAGAGACAAACCGAAACTGCTTAGATTTTTACACCGGAATTTTCGGGCTCGAAAAGTCGAGGATCATGGAGAGGGTTCATCAAGCTCTCGAAGAGCTCAAAACAATGGCTGCCACAAACGAGCCACTTTGGATCCGTAGCATCGAGACAGGAAGAGAGATTTTAAACTACGACGAGTACTTGAAAACTTTCCATCTCAAGAATTCGAACACTTGTTGGCTCAAAAGACATATCGAAGCCTCTCGAGACACGACCGTCGTCTTCATGGAGCCCTCGAGGTTGATCCAAAGCTTCATGGATGAGAATCAATGGAAGGAGATGTTTCCTTCCATGATCTCAAAGGCAGCTACAATTGATGTTATTTGTAATGGAGAAGTTGCCAATTGGAATGGCGCAGTGCAATTGATGTTTGTGGAGGTGCAGCTGCTTACACCATTGGTGCCCACTAGAGAAATCTATTTTATACGTCATTGCAAGCAGCTCGACACTGAACAATGGGCGATTGTCGATGTTTCGATCGACAACGTTGACGATATTAATATCGATGCATCGTTGATGAAGTATAGAAAACGTCCTTCTGGTTGCATCATTAAGGATGAATCTAATGGCCATTGCAAGGTAACAATGGTGGAGCATTTGGAATGTGAAAAAACCCAAGTTCATAACTTGTACCGCACCATAGTCAACAATGGCACTGCCTTTGGAGCAAGACATTGGATGGCAACGCTTCAACTCCAATGCGAACGCCTTGCTTTCTTTATGGCCACCAACATCCCCATCAAAGACTCAACTGGAGTTGCGACTCTGGCTGGAAGAAAAAGCACTTTGAAGTTGGCACAGAGAATGAGTTCAAGCTTCTCCCAAGCAGTGGCAGCTTCAAGTTACCAAACATGGACCAAAGTGGTGGGCAAAACAGGGGAAGATATTAGGGTTTGTTCCAGGAAAAATCTAAGTGACCCTGGTGAACCCATTGGTGTTATTTTATGTGCAGTTTTTTCTCTATGGTTGCCTGTTCCTCCCCACACTCTCTTCCATTTCTTGCGAGACGACGCTCGAAGGAACGAGTGGGACGCCATGTTTGGTGGAGATAAAGTTGATTCAATTGCAAATTTGGCCAAGGGGCAGGATCGAGGCAACTCAGTTAGTATCCAAACAAGAGGATCAAAAGAGAGCAGCAGCAGCAGCATGTGGATTCTCCAAGACACCTCCACAAACTCCTCGGAATCCATGGTAGTCTACTCCGGAGTAGACGTTTCCGGCATGCAGTCGGTGATGACGGGCTGTGATTCCGGCAGCCTCACAATCCTCCCATCGGGATTTTCAATTCTCCCCGACGGCGCTGAGTCCAGGTCCCTCCTCATTACTCGCCAGAAAGACCACAAATCTTCCGACACCCATGGTGGCGCTCTGCTGACCGCCGCCGTTCAAATTGTGACCGACGCCTCTCCCTCTGCAAAACCCACGGTGGATTCGGTTGAGTACGTTAAAAGCATCGTTTGTTGTACGATCAAAAATATCAGGAGCAGCCTGGGATGCTGTGAGGATGATTGTTGA 2253 47.76 MLADMSNNNNRLAFTKDFFSSPALSLTLAGIFRRGEMAEKGDVEMEEVDDGSGEVRRDDAAEVSSENLGPVRSRSDDDFEGGGVHEENEEGDGGCLVKRRKKYHRHTTEQIREMEALFKESPHPDEKQRQQLSKRLGLSPRQAIQERHENTLLKAEMEKLREENKAMRELTKKKVGCPNCGTANAAEDHTAFTTTEQLRIKNAKLKAEVEKLRAALGKHSQSSISPSYSSGNDQETNRNCLDFYTGIFGLEKSRIMERVHQALEELKTMAATNEPLWIRSIETGREILNYDEYLKTFHLKNSNTCWLKRHIEASRDTTVVFMEPSRLIQSFMDENQWKEMFPSMISKAATIDVICNGEVANWNGAVQLMFVEVQLLTPLVPTREIYFIRHCKQLDTEQWAIVDVSIDNVDDINIDASLMKYRKRPSGCIIKDESNGHCKVTMVEHLECEKTQVHNLYRTIVNNGTAFGARHWMATLQLQCERLAFFMATNIPIKDSTGVATLAGRKSTLKLAQRMSSSFSQAVAASSYQTWTKVVGKTGEDIRVCSRKNLSDPGEPIGVILCAVFSLWLPVPPHTLFHFLRDDARRNEWDAMFGGDKVDSIANLAKGQDRGNSVSIQTRGSKESSSSSMWILQDTSTNSSESMVVYSGVDVSGMQSVMTGCDSGSLTILPSGFSILPDGAESRSLLITRQKDHKSSDTHGGALLTAAVQIVTDASPSAKPTVDSVEYVKSIVCCTIKNIRSSLGCCEDDC 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 490656 494949 + CmaCh01G001060.1 Cma01g00106 285799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00106 750 MobiDBLite consensus disorder prediction 117 136 - -
Cma01g00106 750 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 17 745 IPR042160 -
Cma01g00106 750 Pfam Homeodomain 100 142 IPR001356 GO:0003677
Cma01g00106 750 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 17 745 - -
Cma01g00106 750 CDD homeodomain 100 142 IPR001356 GO:0003677
Cma01g00106 750 CDD START_ArGLABRA2_like 252 481 - -
Cma01g00106 750 ProSiteProfiles START domain profile. 248 485 IPR002913 GO:0008289
Cma01g00106 750 SUPERFAMILY Homeodomain-like 90 142 IPR009057 -
Cma01g00106 750 MobiDBLite consensus disorder prediction 117 132 - -
Cma01g00106 750 Coils Coil 143 173 - -
Cma01g00106 750 Pfam START domain 261 482 IPR002913 GO:0008289
Cma01g00106 750 MobiDBLite consensus disorder prediction 71 95 - -
Cma01g00106 750 ProSiteProfiles 'Homeobox' domain profile. 97 142 IPR001356 GO:0003677
Cma01g00106 750 MobiDBLite consensus disorder prediction 42 95 - -
Cma01g00106 750 SMART START_1 257 482 IPR002913 GO:0008289
Cma01g00106 750 Coils Coil 195 222 - -
Cma01g00106 750 Gene3D - 259 481 IPR023393 -
Cma01g00106 750 SUPERFAMILY Bet v1-like 525 682 - -
Cma01g00106 750 Gene3D - 88 175 - -
Cma01g00106 750 SMART HOX_1 99 152 IPR001356 GO:0003677
Cma01g00106 750 SUPERFAMILY Bet v1-like 250 483 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00106 Cma-Chr1:490656 Cma08g00920 Cma-Chr8:5742070 0 dispersed
Cma01g00106 Cma-Chr1:490656 Cma14g01305 Cma-Chr14:10283301 0 wgd
Cma01g00106 Cma-Chr1:490656 Cma08g00707 Cma-Chr8:4309360 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34223 PF01852 START 1.40E-50 CL0209 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00106 K09338 - csv:101221341 1177.93