Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00111 ATGGATTTCTGGCCGGAATTTCTCGCTAGCAGTTGGGGAAAAGAGTTCGTCGGCGGCGGAATCGGCGGCGTTGCAGGCGTCGTCTCCGGCTACCCACTCGACACCCTTCGCATTCGACAACAACACTCCACCTCCGGTTCCGCCCTAAGCGTCCTCCGCAACATCGTGTCCAATGGCGGCCCCACCGCTCTCTTCCGAGGAATGGGTGCTCCACTCGCTTCCGTCACTTTCCAGAACGCCGTTGTTTTTCAGACAAATGCCGTACTCTGCAGGGTGATCGATCCGGCGGCGAGTCAAACCCGTCCGCCGTCGTACAAGGCAGTGGCATTAGGCGGATTCGGCACCGGAGCATTACAGAGCCTAATTTTAACACCCGTAGAGCTCATCAAAATCCGTCTTCAATTACAGGATTTGGGAAATTCAAGCCACTCAGACGTGGGATCGTCTCGGCTCGGGCCGATGCAGGTTGCGAAGAACATTTTCAAAACCGAAGGCTACAGAGGGCTATACAGAGGCTTAACGATCACGATGCTCAGAGACGCTCCTTCGCACTGTTTCTACTTCTGGACTTACCAATTCATGAGAGAAAAGCTTCATCCCGGCTGCAGAAACACCGGACAAGAGTCCTTGAGAACGATGATCGTCGCCGGCGGACTCGCCGGAGTCGCCAGTTGGGTTTGCTGTTACCCACTCGACGTTGTGAAAACCAGACTTCAAGCTCAGTCAAAAATTTCGTTTCAAAAGTACAATGGAATTATGGATTGTTTCTACAAAAGCGTCAAGGAAGAAGGGTACAGTGTTTTGTGGCGTGGATTGGGAACTGCCATTGCCAGAGCTTTTGTGGTTAATGGCGCCGTTTTCTCTGCTTATGAGCTCAGTTTGAGGTGTCTGTTCAGCAATGGCGGCTTGCATGCTGATCATACGATTTGA 930 52.37 MDFWPEFLASSWGKEFVGGGIGGVAGVVSGYPLDTLRIRQQHSTSGSALSVLRNIVSNGGPTALFRGMGAPLASVTFQNAVVFQTNAVLCRVIDPAASQTRPPSYKAVALGGFGTGALQSLILTPVELIKIRLQLQDLGNSSHSDVGSSRLGPMQVAKNIFKTEGYRGLYRGLTITMLRDAPSHCFYFWTYQFMREKLHPGCRNTGQESLRTMIVAGGLAGVASWVCCYPLDVVKTRLQAQSKISFQKYNGIMDCFYKSVKEEGYSVLWRGLGTAIARAFVVNGAVFSAYELSLRCLFSNGGLHADHTI 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 504236 505370 - CmaCh01G001110.1 Cma01g00111 285804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00111 309 Pfam Mitochondrial carrier protein 109 198 IPR018108 -
Cma01g00111 309 Pfam Mitochondrial carrier protein 11 91 IPR018108 -
Cma01g00111 309 Pfam Mitochondrial carrier protein 212 299 IPR018108 -
Cma01g00111 309 SUPERFAMILY Mitochondrial carrier 11 291 IPR023395 -
Cma01g00111 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 197 IPR018108 -
Cma01g00111 309 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Cma01g00111 309 PRINTS Mitochondrial carrier protein signature 118 136 IPR002067 GO:0055085
Cma01g00111 309 PRINTS Mitochondrial carrier protein signature 170 188 IPR002067 GO:0055085
Cma01g00111 309 PRINTS Mitochondrial carrier protein signature 217 239 IPR002067 GO:0055085
Cma01g00111 309 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 1 299 - -
Cma01g00111 309 Gene3D Mitochondrial carrier domain 12 301 IPR023395 -
Cma01g00111 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 92 IPR018108 -
Cma01g00111 309 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 1 299 - -
Cma01g00111 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 208 296 IPR018108 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00111 Cma17g00803 CCT
Cma01g00111 Cma08g00693 CCT
Cma01g00111 Cma14g01309 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00111 Cma-Chr1:504236 Cma16g01153 Cma-Chr16:8867734 2.43E-50 dispersed
Cma01g00111 Cma-Chr1:504236 Cma14g01309 Cma-Chr14:10305977 0 wgd
Cma01g00111 Cma-Chr1:504236 Cma17g00803 Cma-Chr17:6339761 2.11E-143 wgd
Cma01g00111 Cma-Chr1:504236 Cma08g00693 Cma-Chr8:4261140 6.89E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00111 K15109 - csv:101222749 561.222