Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00139 ATGGCGCACATTCTGCTTCATGGCACCCTTCATGTCACCATTTATGAGGTGGATAAGCTTCACTCCGGTGCTCGCAATTTCTTGAAATCGTTGGTTGAAAACGTAGAGGAAGCTGTGGGGTTTGGCAGAGGAGTAACGAGGCTCTACGCCACCATTGATTTAGAGAAGGCCAGAGTTGGAAGAACAAGAAGACTCGAGAAAGAACATTCAAATCCAAAATGGTACGAAACTTTCCACATCTACTGTGCTCACATGGCTTCCAACATCATCTTCACTGTCAAAGACGACAATCCCATTGGAGCAACCTTAATCGGCAGAGCATATTTGCCTGTCAAAGAGATCATAAGCGGTGAAGAAGTTGACCAATGGGTTCCTATCTTGGACGAACGCAAGAAGCCCATTCGTGGAGAACCCAAAATTCATGTCAAATTACAATACTTCGATGTCACTAAGGATCAAAACTGGGCTCGTGGCATCAAAAGCTCCAAGTTTCCTGGAGTTCCCTACACTTATTTCTCTCAACGACAAGGTTGTAAGGTAACTTTGTACCAAGATGCTCATGTTCCTGACAACTTTATCCCCAAAATTCCTCTTGCTGGTGGCAAGTTTTATGAGCCAAATAGATGTTGGGAAGATATTTTTGATGCAATTATTAATGCTAAACACATGATTTACATTACTGGTTGGTCTGTTTACACTGAGATTTCTTTGGTGAGAGATAAAAGAAGGCCAAAGCCTGGTGGAGATGTGATGCTTGGTGAATTGCTTAAGAAAAAAGCAAGTGAAGGAGTTAGAGTTCTTTTGCTTGTTTGGAATGATACTACTTCTGTGCCTATCCTGAAGGAGGACGGGCTAATGGCTACTCATGATGAAGATACTGCTAAGTTCTTTGCTAATACTGATGTGCAATGTGTTCTGTGTCCTCGCAATCCTGATGATGGGGCTAATGTTATTCAGGATATTGCCGTTGGGACAATGTTTACTCATCATCAAAAGATTGTTGTTGTGGACAGTGCTTTGCCTAATGGAGATCCAAATCGAAGGAGGATTGTGAGTTTTGTTGGTGGGATTGATCTTTGTGATGGTAGATATGATACTCCATTTCATTCCCTTTTCAGGACGTTGGATTCAGCTCATCATGATGATTTCCATCAGCCAAACTTCACCGGTACTTCCATAAACAAAGGCGGTCCGAGAGAGCCATGGCACGATATCCATTCCCGCCTTGAAGGACCAGTTGCGTGGGATGTTTTGTACAACTTTGAGCAGAGGTGGAGGAAGCAAGGTGGAAAGGATTTGCTTGTGAAATTAAGGGAGTTGGATGCCATCTTCATCCCTCCATCACCTGTCATGTTCCCTGATGACTTTGATAGTTGGAATGCTCAAGTTTTCAGGTCCATCGATGGCGGAGCGGCTTTTGGCTTCCCCGACTCGCCCGAAGAAGCAGCCAAAGCTGGACTTATAAGTGGAAAGGACAACATTATTGATAGAAGCATCCAAGATGCTTACATTAATGCCATTAGAAGAGCAAAGAATTTCATATACATTGAAAATCAGTATTTCCTTGGAAGCTCGTTTGAATGGAGAGGTACTGATGTGAAGCCGGAGATGATCAATGCCCTGCATCTAATCCCAAAGGAACTTTCACTTAAGATTGTGAGTAAGATTGAAGCTCGAGAGCGGTTCACTGTGTACGTCGTCATCCCGATGTGGCCGGAAGGATTCCCAGAGGGGGGAACAGTTCAAGCTATATTAGATTGGCAAAGAAGAACAATGGAGATGATGTACAAAGATATAGCTCTAGCCCTTAGAGTTAATGGCATCGAAGAGGACCCTAGAAACTATCTGACATTCTTTTGTGTAGGCAATCGCGAAGTTAAGAAGCCTGGAGAGTATGAGCCATCAGAATCCCCTGATGAAAATTCAATTGATGATGAATACATAATAGTGGGATCAGCCAACATCAACCAAAGATCAATGGATGGTGCAAGGGACTCAGAGATAGCCATGGGAGCTTACCAGCCATTTCATCTGTCATCAAGAGAGCCAGCAAGAGGCCAAGTCCATGGCTTCCGTATGGCATTATGGTTTGAACATTTAGGATTACTCCACGACTCCTTCCTCTTTCCAGAAAGCATTGAGTGTGTAAGAAAAGTTAACCAACTTGCTGATAAATATTGGGACCTATACTCAAGTGAAACCTTTGAACACGACCTTCCCGGCCACCTGCTTCGCTACCCGATCGGCATCTCCGGTGAAGGTGAAATTACCGAGCTTCCCGGGTTCGAGTTCTTCCCGGATACTAAGGCGCGAGTCCTAGGTCTCGTCATTGCCACTGCCATGGTCGTCTCCTCCACAGCTCTGTTTCTCGCCTTCTCTAAGCACCACAAGATCACTCCAACCTCCTCCAAATCCCTTCTACGTTCTTGCTTATCTTCTGATGATAAAAAGAGGGAGAAGAACCAGAACAAGAACAAGAAGAAGGGGAAGAAGGTGAGATTTGCAGAGGATGTGAAGGAGCCAAGAGGAAACGGAGAGGAGTACAGGAAAGAGCACGATGAGAAGGTGGCTATGGCGGAAAGAAGAAGAAGAACAACAACAACGAGGAGCTGCAAAAATCAAACTCCTGCAAATCAACTTGCTTTGTACAATGGAATTCTTAAACAACGATCGCAGAGGATCCAATAA 2688 44.27 MAHILLHGTLHVTIYEVDKLHSGARNFLKSLVENVEEAVGFGRGVTRLYATIDLEKARVGRTRRLEKEHSNPKWYETFHIYCAHMASNIIFTVKDDNPIGATLIGRAYLPVKEIISGEEVDQWVPILDERKKPIRGEPKIHVKLQYFDVTKDQNWARGIKSSKFPGVPYTYFSQRQGCKVTLYQDAHVPDNFIPKIPLAGGKFYEPNRCWEDIFDAIINAKHMIYITGWSVYTEISLVRDKRRPKPGGDVMLGELLKKKASEGVRVLLLVWNDTTSVPILKEDGLMATHDEDTAKFFANTDVQCVLCPRNPDDGANVIQDIAVGTMFTHHQKIVVVDSALPNGDPNRRRIVSFVGGIDLCDGRYDTPFHSLFRTLDSAHHDDFHQPNFTGTSINKGGPREPWHDIHSRLEGPVAWDVLYNFEQRWRKQGGKDLLVKLRELDAIFIPPSPVMFPDDFDSWNAQVFRSIDGGAAFGFPDSPEEAAKAGLISGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFEWRGTDVKPEMINALHLIPKELSLKIVSKIEARERFTVYVVIPMWPEGFPEGGTVQAILDWQRRTMEMMYKDIALALRVNGIEEDPRNYLTFFCVGNREVKKPGEYEPSESPDENSIDDEYIIVGSANINQRSMDGARDSEIAMGAYQPFHLSSREPARGQVHGFRMALWFEHLGLLHDSFLFPESIECVRKVNQLADKYWDLYSSETFEHDLPGHLLRYPIGISGEGEITELPGFEFFPDTKARVLGLVIATAMVVSSTALFLAFSKHHKITPTSSKSLLRSCLSSDDKKREKNQNKNKKKGKKVRFAEDVKEPRGNGEEYRKEHDEKVAMAERRRRTTTTRSCKNQTPANQLALYNGILKQRSQRIQ 895
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 625326 632471 + CmaCh01G001390.1 Cma01g00139 285832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00139 895 SUPERFAMILY Phospholipase D/nuclease 150 435 - -
Cma01g00139 895 MobiDBLite consensus disorder prediction 830 867 - -
Cma01g00139 895 Pfam Phospholipase D Active site motif 325 363 IPR001736 GO:0003824
Cma01g00139 895 SUPERFAMILY Phospholipase D/nuclease 497 716 - -
Cma01g00139 895 Pfam C2 domain 8 126 IPR000008 -
Cma01g00139 895 PANTHER PHOSPHOLIPASE D 643 775 - -
Cma01g00139 895 PANTHER PHOSPHOLIPASE D 643 775 IPR015679 -
Cma01g00139 895 CDD C2_plant_PLD 2 147 - -
Cma01g00139 895 PIRSF PLD_plant 641 785 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cma01g00139 895 PIRSF PLD_plant 1 643 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cma01g00139 895 Pfam Phospholipase D C terminal 705 774 IPR024632 -
Cma01g00139 895 Gene3D C2 domain 6 160 IPR035892 -
Cma01g00139 895 SMART C2_3c 9 123 IPR000008 -
Cma01g00139 895 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 149 IPR035892 -
Cma01g00139 895 MobiDBLite consensus disorder prediction 809 876 - -
Cma01g00139 895 Gene3D Endonuclease Chain A 475 675 - -
Cma01g00139 895 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 325 363 IPR001736 GO:0003824
Cma01g00139 895 PANTHER PHOSPHOLIPASE D 2 642 - -
Cma01g00139 895 PANTHER PHOSPHOLIPASE D 2 642 IPR015679 -
Cma01g00139 895 Gene3D Endonuclease Chain A 200 441 - -
Cma01g00139 895 ProSiteProfiles C2 domain profile. 1 124 IPR000008 -
Cma01g00139 895 SMART pld_4 325 363 IPR001736 GO:0003824
Cma01g00139 895 SMART pld_4 642 659 IPR001736 GO:0003824
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00139 Cma08g00678 CCT
Cma01g00139 Cma08g00678 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00139 Cma-Chr1:625326 Cma08g00678 Cma-Chr8:4167206 0 dispersed
Cma08g00622 Cma-Chr8:3490197 Cma01g00139 Cma-Chr1:625326 6.19E-12 dispersed
Cma01g00139 Cma-Chr1:625326 Cma10g00548 Cma-Chr10:2519410 3.62E-11 wgd
Cma01g00139 Cma-Chr1:625326 Cma11g00546 Cma-Chr11:2619526 6.25E-10 wgd
Cma01g00139 Cma-Chr1:625326 Cma14g01346 Cma-Chr14:10473666 2.34E-45 wgd
Cma01g00139 Cma-Chr1:625326 Cma17g00856 Cma-Chr17:6619325 8.98E-08 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00139 K01115 - csv:101215246 1493.4