Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00153 ATGGCCTTTCGCGCGATGTTTTGCTGTGGAATTGGTTCCGCACGGAAAGGAAGAGGGAAGAAACATCAAACATGGAGGGTGTTTTCATTGAAGGAGTTACACTCGGCCACAAATAATTTCAATTATGATAACAAGCTTGGAGAAGGAGAATTTGGTAGCGTTTACTGGGGTCAGCTTTGGGATGGATCACAAATTGCTGTTAAGAGGTTGAAGGTTTGGAACAACAAAGAAGACATGGAATTCTCTGTTGAAGTCGAGATACTGGCCCGAGTTCGGCATAAGAATCTATTGAGTTTACGTGGCTATTGTGTTGAAGGGCAAGAGCGTTTGATCGTGTATGACTACATGCCCAATCTAAGTCTTCTCTCCCATCTACATGGGCATCACTCTTCAGAATCCCAACTCGATTGGAAACGCCGAATGAAAATCGCTATCGGGTCTGCTGAGGGAATTGCCTATCTTCACCACCAAGCAACTCCACGTATAATTCATCAAGACATCAAACCAAATAATGTTTTGCTCGATTCAGACTTCCAAGCTCGTGTAGTCGACTTCGGGTTCGCAAAACTCATCCCCGATGATGCAACACATGTAACAACAGGAGTCAAGGGCACACTTGGATACCTCGCTCCAGAATACGGTATGTCAGGGAAGGCATCAGAGAGTTGTGATGTATATAGCTTTGGCATTCTCCTGCTCGAGCTCGCAACCGGAAAGAAACCTCTTGAGAAGTTGAGTGCAACAACGAAACGCACAATCACAGAGTGGGCACTGCCGGTAGTAGTTGAGAAAAAATACAACGAACTTGCAGATCTAAAGCTAAATGGAGAGTACAATGCAGACGAGCTAAAGCGAGTCGTCCTCGTTGCACTCAGTTGTTCCCATTCACGGCCTGAGAAACGTCCCACCATGCTCGAGGTCGTAGAGCTGCTAAAAGGAGAATCGAAAGAGAAGGTAGCCAAGTTAGAAGATGATGAACTGTTCAAGAGCCATCAAGTAGCTGCAGCACAAACTACAGAGACAGCAGCAGCTGGTGAAGATAGCTCAGACTTGATATCAGAAGAAAAGGATTCAAAAGAGAATTCAACACCAAACCCACATGAGAATAGCAGCTAA 1116 45.25 MAFRAMFCCGIGSARKGRGKKHQTWRVFSLKELHSATNNFNYDNKLGEGEFGSVYWGQLWDGSQIAVKRLKVWNNKEDMEFSVEVEILARVRHKNLLSLRGYCVEGQERLIVYDYMPNLSLLSHLHGHHSSESQLDWKRRMKIAIGSAEGIAYLHHQATPRIIHQDIKPNNVLLDSDFQARVVDFGFAKLIPDDATHVTTGVKGTLGYLAPEYGMSGKASESCDVYSFGILLLELATGKKPLEKLSATTKRTITEWALPVVVEKKYNELADLKLNGEYNADELKRVVLVALSCSHSRPEKRPTMLEVVELLKGESKEKVAKLEDDELFKSHQVAAAQTTETAAAGEDSSDLISEEKDSKENSTPNPHENSS 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 676115 679284 + CmaCh01G001530.1 Cma01g00153 285846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00153 371 SMART serkin_6 40 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00153 371 Pfam Protein kinase domain 41 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00153 371 MobiDBLite consensus disorder prediction 349 363 - -
Cma01g00153 371 SUPERFAMILY Protein kinase-like (PK-like) 23 311 IPR011009 -
Cma01g00153 371 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524
Cma01g00153 371 Gene3D Transferase(Phosphotransferase) domain 1 116 329 - -
Cma01g00153 371 PANTHER BNAA05G14800D PROTEIN 1 364 - -
Cma01g00153 371 MobiDBLite consensus disorder prediction 333 371 - -
Cma01g00153 371 Gene3D Phosphorylase Kinase; domain 1 13 115 - -
Cma01g00153 371 ProSiteProfiles Protein kinase domain profile. 40 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00153 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Cma01g00153 371 PANTHER OS01G0750732 PROTEIN 1 364 - -
Cma01g00153 371 CDD STKc_IRAK 46 313 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00153 Cma14g01360 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00153 Cma-Chr1:676115 Cma16g00164 Cma-Chr16:716404 8.78E-133 dispersed
Cma01g00153 Cma-Chr1:676115 Cma14g01360 Cma-Chr14:10571451 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68243 PF00069 Pkinase 1.80E-45 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00153 - - csv:101212993 620.928