Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma01g00164 | ATGCTGAAGCTGGTCTTGAAAGGGGGAAGTAGGCCGCCATGGGTGGGCTTGGCTGCTGCTGTTTGGGTTCAAATAGCTAGTGCTTCTTCTTATAACTTTTCTCTTTATTCCCACTTGCTTAAATCCGTTCTGGGTTTGAATCAGCAGCAGCTTACGATTCTCGGAGTGGCTAATGACATCGGGGAGAGCGTGGGGCTGCTTCCTGGACTTGCTTACAACATATTTCCTCCATGGGCATTGGTTTTGGTTGGTTCTGTGTGTTGCTTTCTGGGCTATGGAGCTATTTGGCTTGCTGTTAGCAAACTCTCCCCACTATGGCTCACACATTGTATTGCTACAAATAGCAATGCATGGTTCGCAACGGCTGTGCTGGTAACCAACATGAGGAACTTCCCGCTCAGCAGAGGTACTGTTTCTGGCATTCTGAAAGGCTATGCCGGGCTTGGTGCTGCTGTATACACGGTGATATACAGCTTGGTTTTCAGGAAGTCAGCTTCGGATTTGCTGCTGTTTCTTGCAATAGGGATACCCATTTTTTGCATAGCCTTGATGTACTTTGTTCGGCCTTGTACTCCGGCTGCTTCAGAGGATCCATTTGAGCGTGGCCATTTTCTTTTCACACAAGCTGCTTGTGTCTTGCTAGCTGTTTTTCTAGTCTCCACCACAATTCTATATGCAAAAACCACCCCTAGTGATGCTGTGGCATACCTCTTAGTTGCCATAATGGTTGTTCTATTAATGTCTCCTCTTGCAGTTCCCTAA | 762 | 46.98 | MLKLVLKGGSRPPWVGLAAAVWVQIASASSYNFSLYSHLLKSVLGLNQQQLTILGVANDIGESVGLLPGLAYNIFPPWALVLVGSVCCFLGYGAIWLAVSKLSPLWLTHCIATNSNAWFATAVLVTNMRNFPLSRGTVSGILKGYAGLGAAVYTVIYSLVFRKSASDLLLFLAIGIPIFCIALMYFVRPCTPAASEDPFERGHFLFTQAACVLLAVFLVSTTILYAKTTPSDAVAYLLVAIMVVLLMSPLAVP | 253 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 741024 | 742166 | - | CmaCh01G001640.1 | Cma01g00164 | 285857 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma01g00164 | 253 | PANTHER | MAJOR FACILITATOR SUPERFAMILY PROTEIN | 3 | 253 | - | - | |
| Cma01g00164 | 253 | PANTHER | UNCHARACTERIZED NODULIN-LIKE PROTEIN | 3 | 253 | - | - | |
| Cma01g00164 | 253 | SUPERFAMILY | MFS general substrate transporter | 11 | 194 | IPR036259 | - | |
| Cma01g00164 | 253 | Pfam | Nodulin-like | 13 | 253 | IPR010658 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma01g00164 | Cma-Chr1:741024 | Cma20g00761 | Cma-Chr20:3590690 | 4.52E-48 | dispersed | |
| Cma01g00164 | Cma-Chr1:741024 | Cma14g01365 | Cma-Chr14:10596292 | 5.25E-154 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma01g00164 | - | - | csv:101211550 | 429.483 |