Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00171 ATGACCGATATCAGCTTGGAGGAGATTAAGAATGAGAACATTGATCTTGAGCGCATACCAGTTCAGGAAGTGTTCGAGCAATTGAAATGCTCCCGAGATGGTTTGTCCTCAGAGGAGGGGCGCCAGAGGCTTCAGCTCTTCGGCCCAAATAAGCTTGAAGAGAAAAAGGAAAATAAATTTCTGAAGTTTCTTGGTTTTATGTGGAATCCACTTTCATGGGTTATGGAAGCTGCAGCTATCATGGCCATTGTTCTTGCCAATGGAGGGGGCCAACCACCGGATTGGCAGGACTTTGTGGGTATTACTGCACTGCTTATTATCAATTCCACAATCAGCTTTATAGAGGAAAACAATGCAGGCAATGCTGCAGCTGCACTCATGGCCGGTCTTGCACCAAAAACCAAGGTCCTTCGTGATGGAAGATGGTGTGAGGAGGAGGCTGCAATCTTAGTTCCGGGAGATGTTATCAGCATTAAGTTGGGAGATATCATTCCAGCAGATGCCCGTTTGTTGGACGGTGATCCTCTCAAGATTGATCAGTCAGCACTTACCGGGGAGTCTTTGCCAGTTACAAGGTGCGCTGGTGATGAAGTGTTTTCTGGTTCCACCGTCAAGCAAGGTGAGATCGAGGCTGTTGTAATTGCTACTGGCGTCCACACCTTCTTTGGAAAGGCTGCTCATTTGGTTGATAGCACAAATCAAGTGGGACACTTCCAAAAGGTGTTGACTGCCATTGGAAACTTCTGTATTTGCTCGATTGCTGTGGGGATGGCGATAGAGATAGTAGTGATGTATCCAATTCAACATCGTCGATATAGAGATGGGATTAACAATCTCTTGGTGCTTCTCATTGGGGGGATTCCAATTGCCATGCCAACAGTGTTGTCGGTCACAATGGCCATTGGTTCTCATAGGTTATCCCAGCAGGGTGCTATTACAAAAAGAATGACGGCCATTGAAGAGATGGCTGGAATGGATGTACTCTGCAGTGATAAGACTGGAACTCTAACTCTCAACAAGCTTACAGTTGACAAATCCATGATTGAGGTGTTCGTTAGAGATGTCGACAAAGATGCTGTAATTTTGCTTGGTGCTAGAGCTTCCAGGGTTGAGAATCAGGATGCTATTGATGCTTGCATTGTTGGCATGCTAGGCGATCCTAAGGAGGCCAGAGAAGGCATTAAAGAGGTCCATTTTCTGCCCTTTAACCCTGTAGACAAGCGTACAGCTATTACATATATTGATAGCGATGGCAATTGGCATAGAGTGAGTAAAGGAGCACCGGAGCAGATTATCGAGCTCTGTGACCTCCGGGAAGATATCAAGAAGAAGGCTCATTCAATCATCGACAAATTTGCAGACCGTGGTCTTCGTTCTCTTGCTGTTGGCAGACAGACCGTTCCAGAAAAATCCAAAGATGGTGCTGGAGGACCGTGGCAATTTGTTGGTCTCTTGCCTCTCTTTGACCCTCCGAGGCATGACAGTGCAGAGACAATCCGAAGGGCACTTAATCTTGGTGTCAACGTTAAGATGATCACCGGTGACCAACTGGCCATTGGTAAGGAAACTGGGCGCAGGCTTGGAATGGGCACAAACATGTATCCATCTTCCTCCCTCCTTGGACAAAGCATGGACGAATCAATTGCTTCTTTGCCTGTTGATGAGCTTATTGAGAAGGCTGACGGATTTGCAGGAGTCTTCCCCGAGCATAAATATGAAATTGTGAGGAGACTTCAAGAGAGGAAGCATATCTGTGGGATGACAGGAGATGGTGTGAATGATGCTCCAGCATTGAAGAAGGCAGACATAGGAATTGCAGTGGCTGATGCAACTGATGCGGCAAGAAGTGCTTCTGATATAGTCTTGACAGAGCCAGGACTGAGCGTGATTGTCAGTGCTGTTTTAACAAGCAGAGCCATATTCCAGAGAATGAAGAACTACACCATCTACGCAGTTTCAATCACCATCCGTATTGTGTTGGGCTTTATGCTTATTGCACTCATTTGGAAATTTGACTTCTCCCCTTTCATGGTTCTTGTCATAGCCATTCTCAATGATGGTACCATCATGACCATCTCTAAAGACAGAGTAAAACCTTCCCCTCTTCCTGATTCATGGAAGCTCCGCGAGATCTTTGCAACTGGAGTTGTTTTGGGCTCCTACTTGGCCGTTATGACTGTTGTTTTCTTCTGGATCATCCACACTACTGATTTCTTTGGGGATAAATTTGGTGTCCATTCCATCAGAGAAAATAGGGCTGAGCTCACAGCAGCTGTCTATCTTCAAGTTAGCACAGTCAGTCAGGCACTCATTTTCGTCACAAGATCTCGAAGCTGGTCATTTATTGAACGCCCTGGTCTACTCCTCGTGTTTGCATTCTTCGTGGCACAGCTGGTGGCTACGCTCATTGCTGTGTATGCCAACTGGGATTTTGCGGTTATGAAAGGGATTGGATGGGGATGGGCTGGAGTGATCTGGATCTACAGCATAGTCTTCTACATTCCTCTGGACGTTCTCAAGTTCGCCACTCGATATGCATTGAGCGGCAAGGCTTGGGACAATATGCTCCAAAACAAGATTGCTTTCACATCAAAGAAGGATTATGGCATTGGGGAGAGAGAGGCTCAATGGGCTGCAGCTCAACGTACCCTTCACGGCCTGCAGCCTCCCGAAATGTCAGAGCTCTTCAACGACAAAAGCAATTACAGGGAGTTGTCTGAAATCGCAGAGCAAGCCATGAAGCGTGCTGAGGTTGCAAGGTTGAGGGAGCTTCATACATTGAAGGGGCATGTTGAATCGGTGGTGAAGCTAAAGGGATTGGACATTGAAACAATCCAACAACACTATACTGTTTGA 2856 46.5 MTDISLEEIKNENIDLERIPVQEVFEQLKCSRDGLSSEEGRQRLQLFGPNKLEEKKENKFLKFLGFMWNPLSWVMEAAAIMAIVLANGGGQPPDWQDFVGITALLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWCEEEAAILVPGDVISIKLGDIIPADARLLDGDPLKIDQSALTGESLPVTRCAGDEVFSGSTVKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMAIEIVVMYPIQHRRYRDGINNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSMIEVFVRDVDKDAVILLGARASRVENQDAIDACIVGMLGDPKEAREGIKEVHFLPFNPVDKRTAITYIDSDGNWHRVSKGAPEQIIELCDLREDIKKKAHSIIDKFADRGLRSLAVGRQTVPEKSKDGAGGPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSMDESIASLPVDELIEKADGFAGVFPEHKYEIVRRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLIALIWKFDFSPFMVLVIAILNDGTIMTISKDRVKPSPLPDSWKLREIFATGVVLGSYLAVMTVVFFWIIHTTDFFGDKFGVHSIRENRAELTAAVYLQVSTVSQALIFVTRSRSWSFIERPGLLLVFAFFVAQLVATLIAVYANWDFAVMKGIGWGWAGVIWIYSIVFYIPLDVLKFATRYALSGKAWDNMLQNKIAFTSKKDYGIGEREAQWAAAQRTLHGLQPPEMSELFNDKSNYRELSEIAEQAMKRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV 951
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 759278 763459 - CmaCh01G001710.1 Cma01g00171 285864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00171 951 Pfam haloacid dehalogenase-like hydrolase 325 602 - -
Cma01g00171 951 PRINTS H+-transporting ATPase (proton pump) signature 445 463 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma01g00171 951 PRINTS H+-transporting ATPase (proton pump) signature 560 576 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma01g00171 951 PRINTS H+-transporting ATPase (proton pump) signature 588 604 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma01g00171 951 PRINTS H+-transporting ATPase (proton pump) signature 619 644 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma01g00171 951 PRINTS H+-transporting ATPase (proton pump) signature 760 781 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma01g00171 951 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 563 676 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma01g00171 951 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 101 350 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma01g00171 951 Coils Coil 902 922 - -
Cma01g00171 951 CDD P-type_ATPase_H 34 841 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cma01g00171 951 ProSitePatterns E1-E2 ATPases phosphorylation site. 331 337 IPR018303 -
Cma01g00171 951 SUPERFAMILY HAD-like 325 635 IPR036412 -
Cma01g00171 951 Pfam E1-E2 ATPase 131 308 - -
Cma01g00171 951 Gene3D - 900 951 - -
Cma01g00171 951 SFLD p-type atpase 311 640 IPR044492 -
Cma01g00171 951 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 847 IPR023298 -
Cma01g00171 951 Gene3D - 94 815 - -
Cma01g00171 951 Pfam Cation transporter/ATPase, N-terminus 19 81 IPR004014 -
Cma01g00171 951 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
Cma01g00171 951 Gene3D - 341 488 IPR023299 GO:0000166
Cma01g00171 951 Gene3D - 326 625 IPR023214 -
Cma01g00171 951 PRINTS P-type cation-transporting ATPase superfamily signature 179 193 - -
Cma01g00171 951 PRINTS P-type cation-transporting ATPase superfamily signature 329 343 - -
Cma01g00171 951 PRINTS P-type cation-transporting ATPase superfamily signature 483 494 - -
Cma01g00171 951 PRINTS P-type cation-transporting ATPase superfamily signature 505 515 - -
Cma01g00171 951 PRINTS P-type cation-transporting ATPase superfamily signature 588 607 - -
Cma01g00171 951 PRINTS P-type cation-transporting ATPase superfamily signature 611 623 - -
Cma01g00171 951 PANTHER CALCIUM-TRANSPORTING ATPASE 4 928 - -
Cma01g00171 951 PANTHER ATPASE 9, PLASMA MEMBRANE-TYPE 4 928 - -
Cma01g00171 951 SUPERFAMILY Calcium ATPase, transduction domain A 132 229 IPR008250 -
Cma01g00171 951 Gene3D - 132 216 - -
Cma01g00171 951 SFLD C1.7: P-type atpase like 311 640 - -
Cma01g00171 951 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 34 806 IPR006534 GO:0008553|GO:0016021|GO:0120029
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00171 Cma-Chr1:759278 Cma12g00291 Cma-Chr12:1492694 0 dispersed
Cma18g00130 Cma-Chr18:635192 Cma01g00171 Cma-Chr1:759278 3.44E-57 dispersed
Cma01g00171 Cma-Chr1:759278 Cma10g00485 Cma-Chr10:2222497 0 wgd
Cma01g00171 Cma-Chr1:759278 Cma11g00484 Cma-Chr11:2340888 0 wgd
Cma01g00171 Cma-Chr1:759278 Cma14g01362 Cma-Chr14:10579983 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00171 K01535 - csv:101212751 1738.39