Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00172 ATGGCAAGACCTCAACAGCGCTATCGAGGAGTCCGGCAAAGGCATTGGGGCTCTTGGGTCTCCGAGATTCGTCACCCTTTACTGAAGACAAGGATATGGCTGGGAACTTTCGAAACGGCGGAAGACGCAGCCAGAGCATACGACGAAGCTGCCAGAATCATGTGTTGCCCTAACAATCTCCCAACCAATCGCAACGCGCCACTTCACTCTTTGTCCGCGCCGCCGCCGTCGAACCTTCTAACCCCCACATTGATCGAGAAGTTGCAGAAATGTCGAACGGCTTCTTTCCAAATGGTCAAAAAGCAATTCCCCAACAAAACCCACTTCTCCGACCGGAAATCCGCTCACCCAAGTCGCCCTCAGCCCACCAATCTCGACGACGCCTATGGTTCTTCCGGCGTTCACTTTCCGGAGACGGACGCCAAGTGGGTCGCCGGCGAGGAGGCTCAGGAGATCGCCCGGCTTGAAGATGATCACGTAGAGCAAATGATTCAAGAATTACTTGATCTTGGGTCATTTGAGTTTTGCCCTAATAATAATAATCATCTTAACGATATTGAGTCTACAAATAATTAA 576 51.04 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNLPTNRNAPLHSLSAPPPSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSRPQPTNLDDAYGSSGVHFPETDAKWVAGEEAQEIARLEDDHVEQMIQELLDLGSFEFCPNNNNHLNDIESTNN 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 766805 767728 - CmaCh01G001720.1 Cma01g00172 285865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00172 191 SUPERFAMILY DNA-binding domain 7 56 IPR016177 GO:0003677
Cma01g00172 191 SMART rav1_2 7 67 IPR001471 GO:0003700|GO:0006355
Cma01g00172 191 Pfam AP2 domain 7 52 IPR001471 GO:0003700|GO:0006355
Cma01g00172 191 CDD AP2 6 55 IPR001471 GO:0003700|GO:0006355
Cma01g00172 191 PANTHER ETHYLENE RESPONSE FACTOR 1 177 - -
Cma01g00172 191 MobiDBLite consensus disorder prediction 103 130 - -
Cma01g00172 191 ProSiteProfiles AP2/ERF domain profile. 7 67 IPR001471 GO:0003700|GO:0006355
Cma01g00172 191 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 177 - -
Cma01g00172 191 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Cma01g00172 191 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Cma01g00172 191 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00172 Cma-Chr1:766805 Cma01g01479 Cma-Chr1:10416824 8.44E-49 dispersed
Cma01g00172 Cma-Chr1:766805 Cma17g00889 Cma-Chr17:6760886 2.33E-52 wgd
Cma01g00172 Cma-Chr1:766805 Cma08g00596 Cma-Chr8:3388485 2.98E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34227 PF00847 AP2 3.50E-11 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00172 - - cmos:111452652 350.132