Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00179 ATGGACACAGAGGAAGTTCCTTCGCCTGTGACGCCGGGGACGCCCGGAGCCCCACTGTTTGGAGGACACAAGGGGAATCACCAAGGAAGTGAGAATGGTAAAAGGTCTCTTCTCAAGAGCTGCATCTCCTTCAATGTTGATGATTGGGGCACCGAAGAAGGAAGCTTATCTAAAGTCTCACTTGCAAGGAAGGTTGGAGCGGAGTTCATTGGCACTCTGATGCTCATCTTTGCTGGAACTGCCACTGCTATCGTGAACCAAAAGATACAAGGAACTGAAACGCTCATTGGCCTAGCAGCCTCCACAGGCATGGCAGTGATGGTTGTCATCTTATCGACCGGCCACATCTCCGGAGCCCATCTGAACCCAGGCATCACCATTGCTTTCGCTGCACTAAAGCACTTTCCATGGAAGCAGGTGCCGGTGTACATTGGAGCTCAAATAGTAGCTTCTCTATGTGCGTCATTTGCATTGAAATGGATATTTGATCCCTTTATGGGTGGAGGAGTGACTGTTCCTTCATGTGGATATTCTCAAGCTTTTGCTCTTGAGTTTATCATTAGCTTCAACCTCATGTTTGTCATTACCGCCGTTGCCACCGATACTCGGGCTGTGGGAGAGTTGGCGGGAATCGTTGTGGGAGCAACAGTCATGCTCAATGTCCTCATCGCCGGGGAAACGACTGGAGCTTCAATGAATCCAGTGAGAACACTGGGGCCAGCCATTGCAGCAAACAATTTTAGAGCCATATGGATTTACCTCACAGCTCCCATACTAGGGACATTGTGTGGAGCTGGAATCTACACTGCAATTAAGTTGCCTGACCAAGATGGCGATGCACGCTTGCCTTCCACTGCAAGAAGCTTTCGAAGATGA 876 49.66 MDTEEVPSPVTPGTPGAPLFGGHKGNHQGSENGKRSLLKSCISFNVDDWGTEEGSLSKVSLARKVGAEFIGTLMLIFAGTATAIVNQKIQGTETLIGLAASTGMAVMVVILSTGHISGAHLNPGITIAFAALKHFPWKQVPVYIGAQIVASLCASFALKWIFDPFMGGGVTVPSCGYSQAFALEFIISFNLMFVITAVATDTRAVGELAGIVVGATVMLNVLIAGETTGASMNPVRTLGPAIAANNFRAIWIYLTAPILGTLCGAGIYTAIKLPDQDGDARLPSTARSFRR 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 791522 794099 - CmaCh01G001790.1 Cma01g00179 285872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00179 291 PANTHER AQUAPORIN NIP2-1 9 279 IPR034294 -
Cma01g00179 291 PRINTS Major intrinsic protein family signature 63 82 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma01g00179 291 PRINTS Major intrinsic protein family signature 102 126 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma01g00179 291 PRINTS Major intrinsic protein family signature 139 158 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma01g00179 291 PRINTS Major intrinsic protein family signature 183 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma01g00179 291 PRINTS Major intrinsic protein family signature 214 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma01g00179 291 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma01g00179 291 MobiDBLite consensus disorder prediction 1 32 - -
Cma01g00179 291 PANTHER BNAA02G36290D PROTEIN 9 279 - -
Cma01g00179 291 SUPERFAMILY Aquaporin-like 58 276 IPR023271 -
Cma01g00179 291 Pfam Major intrinsic protein 56 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma01g00179 291 Gene3D Glycerol uptake facilitator protein. 35 280 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00179 Cma-Chr1:791522 Cma15g01348 Cma-Chr15:8469875 1.15E-110 dispersed
Cma14g00591 Cma-Chr14:2933065 Cma01g00179 Cma-Chr1:791522 1.20E-62 dispersed
Cma01g00179 Cma-Chr1:791522 Cma02g00971 Cma-Chr2:5803306 1.99E-127 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00179 K09874 - csv:101207376 501.516