Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g00179 | ATGGACACAGAGGAAGTTCCTTCGCCTGTGACGCCGGGGACGCCCGGAGCCCCACTGTTTGGAGGACACAAGGGGAATCACCAAGGAAGTGAGAATGGTAAAAGGTCTCTTCTCAAGAGCTGCATCTCCTTCAATGTTGATGATTGGGGCACCGAAGAAGGAAGCTTATCTAAAGTCTCACTTGCAAGGAAGGTTGGAGCGGAGTTCATTGGCACTCTGATGCTCATCTTTGCTGGAACTGCCACTGCTATCGTGAACCAAAAGATACAAGGAACTGAAACGCTCATTGGCCTAGCAGCCTCCACAGGCATGGCAGTGATGGTTGTCATCTTATCGACCGGCCACATCTCCGGAGCCCATCTGAACCCAGGCATCACCATTGCTTTCGCTGCACTAAAGCACTTTCCATGGAAGCAGGTGCCGGTGTACATTGGAGCTCAAATAGTAGCTTCTCTATGTGCGTCATTTGCATTGAAATGGATATTTGATCCCTTTATGGGTGGAGGAGTGACTGTTCCTTCATGTGGATATTCTCAAGCTTTTGCTCTTGAGTTTATCATTAGCTTCAACCTCATGTTTGTCATTACCGCCGTTGCCACCGATACTCGGGCTGTGGGAGAGTTGGCGGGAATCGTTGTGGGAGCAACAGTCATGCTCAATGTCCTCATCGCCGGGGAAACGACTGGAGCTTCAATGAATCCAGTGAGAACACTGGGGCCAGCCATTGCAGCAAACAATTTTAGAGCCATATGGATTTACCTCACAGCTCCCATACTAGGGACATTGTGTGGAGCTGGAATCTACACTGCAATTAAGTTGCCTGACCAAGATGGCGATGCACGCTTGCCTTCCACTGCAAGAAGCTTTCGAAGATGA | 876 | 49.66 | MDTEEVPSPVTPGTPGAPLFGGHKGNHQGSENGKRSLLKSCISFNVDDWGTEEGSLSKVSLARKVGAEFIGTLMLIFAGTATAIVNQKIQGTETLIGLAASTGMAVMVVILSTGHISGAHLNPGITIAFAALKHFPWKQVPVYIGAQIVASLCASFALKWIFDPFMGGGVTVPSCGYSQAFALEFIISFNLMFVITAVATDTRAVGELAGIVVGATVMLNVLIAGETTGASMNPVRTLGPAIAANNFRAIWIYLTAPILGTLCGAGIYTAIKLPDQDGDARLPSTARSFRR | 291 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 791522 | 794099 | - | CmaCh01G001790.1 | Cma01g00179 | 285872 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g00179 | 291 | PANTHER | AQUAPORIN NIP2-1 | 9 | 279 | IPR034294 | - | |
Cma01g00179 | 291 | PRINTS | Major intrinsic protein family signature | 63 | 82 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma01g00179 | 291 | PRINTS | Major intrinsic protein family signature | 102 | 126 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma01g00179 | 291 | PRINTS | Major intrinsic protein family signature | 139 | 158 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma01g00179 | 291 | PRINTS | Major intrinsic protein family signature | 183 | 201 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma01g00179 | 291 | PRINTS | Major intrinsic protein family signature | 214 | 236 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma01g00179 | 291 | PRINTS | Major intrinsic protein family signature | 251 | 271 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma01g00179 | 291 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Cma01g00179 | 291 | PANTHER | BNAA02G36290D PROTEIN | 9 | 279 | - | - | |
Cma01g00179 | 291 | SUPERFAMILY | Aquaporin-like | 58 | 276 | IPR023271 | - | |
Cma01g00179 | 291 | Pfam | Major intrinsic protein | 56 | 268 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma01g00179 | 291 | Gene3D | Glycerol uptake facilitator protein. | 35 | 280 | IPR023271 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00179 | Cma-Chr1:791522 | Cma15g01348 | Cma-Chr15:8469875 | 1.15E-110 | dispersed | |
Cma14g00591 | Cma-Chr14:2933065 | Cma01g00179 | Cma-Chr1:791522 | 1.20E-62 | dispersed | |
Cma01g00179 | Cma-Chr1:791522 | Cma02g00971 | Cma-Chr2:5803306 | 1.99E-127 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g00179 | K09874 | - | csv:101207376 | 501.516 |