Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00182 ATGCCCCTTGCTGCCGCCGCCGCCGCCGCAACCGCCGCCGTAGCTTCCGGCCAAACTGTTTGTGTCACCGGTGCTGGTGGCTTCATTGCCTCGTGGCTCGTGAAGCTCCTTCTCCAAAAGGGTTACAGCGTTAGAGGCACTGTCAGAAACCCAGATGATTCGAAGAATGCTCATTTGAAAGAGCTGGATGGAGCTAAGGAAAGGCTAACGTTGTATGCTGCTGATCTTCTTCATTTTGAGAACCTTAAAGCCGCCATTATGGGCTGTGACGGTATTTTTCATACTGCATCACCCGTAACCGATGACCTTGAAAAGATGGATGAAGCAATAATTGGAACAAAGAACGTCATAACGGCGGCGGCCGAGGCCAAAGTCCGACGGGTTGTTTTCACATCGTCGATTGGGACCGTGCACATGAACCCTAATCAGAACCCGGACATAGTGGTTGATGAGTCTTGTTGGAGTGACCTTGACTTTTGCAAAAACACTAAGAACTGGTATTGCCATGCAAAGACAATAGCAGAACAAACAGCATGGGCAATGGCAGAAGAAAAAGGGGTTGATCTAGTGGTGGTGAACCCAATGCTGGTGCTTGGACCATTACTACAACAAACAATAAATGCAAGTGTAGTTCATATAATGAAGTATTTGACAGGGTCAGTCAAGACCTATGTGAATGCAGTTCAAGGTTATGTTCATGTTAAGGATGTTGCAAAGGTTCACGTTTTGGTTTACGAGACTCCCTCGGCCTTCGGTAGATATATTTGTGCCGAGACCATGCTTCATCGCGCAGAATTGGTTGAAATTTTGGCTGATTTGTTTCCCGAGTATCCCGTTCCTACTAAGTGCTGTGATGAGAAGAACCCTAAGAAGAAAGCTTACAAATTTAGTGTAAAAAAGGTTAAAGACTTAGGCATGGCCGAGTTCATACCTGTGAAGCAATGCATATATGAAACTGTGAAGAGTCTTCAAGAGAAGGGTCATCTTCCACTTCCACTTCCAACTCGACCTCATCAATCTATGTCATTTTGCTAG 1035 45.89 MPLAAAAAAATAAVASGQTVCVTGAGGFIASWLVKLLLQKGYSVRGTVRNPDDSKNAHLKELDGAKERLTLYAADLLHFENLKAAIMGCDGIFHTASPVTDDLEKMDEAIIGTKNVITAAAEAKVRRVVFTSSIGTVHMNPNQNPDIVVDESCWSDLDFCKNTKNWYCHAKTIAEQTAWAMAEEKGVDLVVVNPMLVLGPLLQQTINASVVHIMKYLTGSVKTYVNAVQGYVHVKDVAKVHVLVYETPSAFGRYICAETMLHRAELVEILADLFPEYPVPTKCCDEKNPKKKAYKFSVKKVKDLGMAEFIPVKQCIYETVKSLQEKGHLPLPLPTRPHQSMSFC 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 802536 804738 + CmaCh01G001820.1 Cma01g00182 285875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00182 344 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 324 IPR036291 -
Cma01g00182 344 Pfam NAD dependent epimerase/dehydratase family 20 249 IPR001509 -
Cma01g00182 344 Gene3D - 9 342 - -
Cma01g00182 344 PANTHER CINNAMOYL-COA REDUCTASE 15 334 - -
Cma01g00182 344 CDD FR_SDR_e 20 305 - -
Cma01g00182 344 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 15 334 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00182 Cma-Chr1:802536 Cma14g01059 Cma-Chr14:5644557 0 dispersed
Cma01g00182 Cma-Chr1:802536 Cma01g00183 Cma-Chr1:806211 0 tandem
Cma18g01024 Cma-Chr18:8545289 Cma01g00182 Cma-Chr1:802536 3.67E-80 transposed
Cma01g00182 Cma-Chr1:802536 Cma14g01057 Cma-Chr14:5613286 0 wgd
Cma01g00182 Cma-Chr1:802536 Cma17g00896 Cma-Chr17:6791765 8.80E-180 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00182 K09753 - csv:101219069 561.607