Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00183 ATGCCGATCAGCACCTCTGCAGTTTCAGGCCACACGGTGTGTGTCACCGGCGCCGGAGGCTTCATTGCTTCTTGGCTTGTGAAGCTCCTTCTCCAAAAGGGCTACACTGTTAGAGGAACTGTCAGAAACGCTGATGATCAAAAGAATGCTCATTTGAAAGAGCTGGAAGGAGCTAAAGAGAGGCTGTCTTTGTTCAGTGCTGATCTTCTTGATTTTGATAGCCTTAAAGCTGCCATTACCGGCTGCGATGGCGTCTTCCACACTGCCTCTCCGGTCACCGACGATCCCGAAAAGGTGGAACAAGCCATAATTGGGACAAAGAACGTCATGGCTGCCGCTGCCGAAGCAAAAGTTCGACGGGTAGTGTTCACCTCGTCGATCGGTACCGTCTACATGAACCCTAACCGGAGCCCAGATGCAGTGGTGGATGAGTCTTGTTGGAGTGATCTCGAGTTTTGCAAGAACACTAAGAATTGGTATTGCTATGCAAAGACAATAGCTGAACAGACAGCATGGGAAGTGGCAAAAGAACAAGGAGTGGATTTGGTTGTGGTGAATCCAATGCTGGTTTTGGGGCCTTTGCTGCAAGCTGGTGTGAATGCAAGCGTTGTTCATATAATGAAGTATCTGACAGGATCTGCAAAGACATATGTAAATGCTGTACAAGGTTACGTGGATGTTAAGGATGTTGCAAAAGCTCATGTTTTGGTCTATGAAACTCCTTCAGCTTCAGGCAGATACATTTGTGTGGAAAGCATGCTTCACCGTGGTGAATTGGTTGAGATTCTTACCAAGTTCTTCCCTGAATATCCCATTCCCACCAAGTGTTCTGATGAGGTGAATCCCAAGAAGAAACCTTACAAATACACTGTGGAGAAGCTGAAGTCATTGGGAATGGAGTTTACACCTATCAAACAATGCATATATGAAACTGTGAAGAGCTTACAAGAAAAGGGTCATCTTCCTCTTCCTTCCCAATTTCAACATTGA 990 46.06 MPISTSAVSGHTVCVTGAGGFIASWLVKLLLQKGYTVRGTVRNADDQKNAHLKELEGAKERLSLFSADLLDFDSLKAAITGCDGVFHTASPVTDDPEKVEQAIIGTKNVMAAAAEAKVRRVVFTSSIGTVYMNPNRSPDAVVDESCWSDLEFCKNTKNWYCYAKTIAEQTAWEVAKEQGVDLVVVNPMLVLGPLLQAGVNASVVHIMKYLTGSAKTYVNAVQGYVDVKDVAKAHVLVYETPSASGRYICVESMLHRGELVEILTKFFPEYPIPTKCSDEVNPKKKPYKYTVEKLKSLGMEFTPIKQCIYETVKSLQEKGHLPLPSQFQH 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 806211 807938 + CmaCh01G001830.1 Cma01g00183 285876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00183 329 CDD FR_SDR_e 13 298 - -
Cma01g00183 329 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 316 IPR036291 -
Cma01g00183 329 PANTHER CINNAMOYL-COA REDUCTASE 8 324 - -
Cma01g00183 329 Coils Coil 327 329 - -
Cma01g00183 329 Coils Coil 41 61 - -
Cma01g00183 329 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 8 324 - -
Cma01g00183 329 Pfam NAD dependent epimerase/dehydratase family 13 243 IPR001509 -
Cma01g00183 329 Gene3D - 3 329 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00183 Cma-Chr1:806211 Cma14g01057 Cma-Chr14:5613286 0 dispersed
Cma20g00694 Cma-Chr20:3180653 Cma01g00183 Cma-Chr1:806211 4.92E-77 dispersed
Cma01g00182 Cma-Chr1:802536 Cma01g00183 Cma-Chr1:806211 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00183 K09753 - csv:116401668 602.438