Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00184 ATGGCTGCTGGAGGGCCTAATTCTGGGCAGCCACAGTTCTTTTCTAGGGCTGGAGATGAGAGTTTTTCGCACGCGCCATTGATCGAGAACACAGAAACTGATCAGATTGTTGTTCCTGATAAAAAAAGCTGGAAGAACCTTTTTGCATACATGGGCCCGGGATTTCTTGTTTCTATTGCTTATATTGATCCTGGAAATTTTGAAACTGATCTACAATCTGGAGCACAGTACAAGTATGAGTTGCTTTGGATCATATTACTGGCTTCTTGCGCCGCCCTTGTCATACAATCTTTAGCAGCAAATCTAGGAGTTGTCACAGGAAAACATTTAGCAGAGCACTGTAAAGCTGAGTACCCCAAGGTGCAAAATTTCATCCTATGGATCCTTGCTGAAATTGCAATTGTTGCATGTGATATTCCCGAAGTTATAGGAACCGCTTTTGCATTGAATATGCTCTTCAGCATTCCTATTTGGTGCGGGGTTCTTCTGACAGGGCTTAGTACACTACTCCTCCTTGCGCTGCAGCAATATGGGATTAGAAAGCTCGAATTCTTGATTGCATTTCTTGTATTGACAATTGCAATTTGCTTCTTTCTGGAGTTGGGCTACGCACAGCCCGATGTCGGAGAAATTTTTTATGGGTTATTTGTCCCTCAATTAAAAGGAAGTGGTGCTACTGGTCTTGCAATTTCACTTCTTGGTGCTATGGTTATGCCACACAATCTCTTTCTTCACTCTGCACTGGTGCTCTCTAGGAAAATACCCCGATCCGTTCCTGGCATCAAGGAAGCTTGCAGATTTTATATGATAGAGAGTGGCTTTGCTCTTTTGGTGGCTTTCTTCATTAACGTGGCCGTCATTTCAGTTAGTGGCGCGGTTTGCAATTCCCCAGATCTAAATAAGGAGGACCAAATGAGCTGCAGTGACTTGGACTTGAATGAAGCTTCATTTTTATTGAGAAATGTATTGGGTAAATGGAGTTCCAAACTTTTTGCCATTGCTTTGTTAGCATCTGGTCAGAGTTCTACCATAACAGGAACCTATGCAGGACAGTATGTCATGCAGGGGTTTCTCGATTTGAAACTGATGCCATGGATCCGAAACTTTTTAACGCGAAGCTTAGCGATTGTTCCTAGTTTGATTGTTGCAATCATTGGTGGGCCTTCTGGGGCTGGGAAGTTGATCATTATCTCATCGATGATTTTGTCGTTTGAACTCCCTTTTGCTCTCATTCCCCTTTTGAAGTTTACGAGCAGCAAGACGAAGATGGGTCCACATGTCAACTCCCTCGCGATTACGATACTGACATGGATCATCGGTTTCCTCATCATGGCTATAAATATATACTACCTCATAACCCGTTTCGTCCACGTGCTTATTCACAGTGATCTCCAACTCGCAGCAGTCATCTTTATAGGGATACTAGGATTTTCAGGCATGGCATTATATTTAGCTGGAATTGCTTATCTGGTTTTGAGAAAGACCAAGAAGATCACTCATCTCTTGGCACCAACAACAGAAGAAAGTGAGCGATTGAGCATCGAGCCGAGCAAGACATCAGCATATAACCTCCCGAGCGAAGAAACAATAAAAAAAAACTTCAGCCACAGAAGGAAGGAAGGCAGATCCTTTGGATGGATGCTGGTTTCATTTGTTTTGGACATAGAACAGACAGGTGAAACTCAGAAGCACGGCAACTGGAAAGGTGAAAAGTTAAATCAGCTTAACCCAACTCTACCTTCAATACTGCCTTGCTAG 1758 43.06 MAAGGPNSGQPQFFSRAGDESFSHAPLIENTETDQIVVPDKKSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILLASCAALVIQSLAANLGVVTGKHLAEHCKAEYPKVQNFILWILAEIAIVACDIPEVIGTAFALNMLFSIPIWCGVLLTGLSTLLLLALQQYGIRKLEFLIAFLVLTIAICFFLELGYAQPDVGEIFYGLFVPQLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVPGIKEACRFYMIESGFALLVAFFINVAVISVSGAVCNSPDLNKEDQMSCSDLDLNEASFLLRNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLKLMPWIRNFLTRSLAIVPSLIVAIIGGPSGAGKLIIISSMILSFELPFALIPLLKFTSSKTKMGPHVNSLAITILTWIIGFLIMAINIYYLITRFVHVLIHSDLQLAAVIFIGILGFSGMALYLAGIAYLVLRKTKKITHLLAPTTEESERLSIEPSKTSAYNLPSEETIKKNFSHRRKEGRSFGWMLVSFVLDIEQTGETQKHGNWKGEKLNQLNPTLPSILPC 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 808703 814053 - CmaCh01G001840.1 Cma01g00184 285877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00184 585 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 8 507 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma01g00184 585 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 46 423 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma01g00184 585 PRINTS Natural resistance-associated macrophage protein signature 399 418 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma01g00184 585 PRINTS Natural resistance-associated macrophage protein signature 339 358 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma01g00184 585 PRINTS Natural resistance-associated macrophage protein signature 154 173 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma01g00184 585 PRINTS Natural resistance-associated macrophage protein signature 179 200 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma01g00184 585 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma01g00184 585 PRINTS Natural resistance-associated macrophage protein signature 229 252 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma01g00184 585 PRINTS Natural resistance-associated macrophage protein signature 367 384 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma01g00184 585 Pfam Natural resistance-associated macrophage protein 67 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma01g00184 585 Hamap Divalent metal cation transporter MntH [mntH]. 32 455 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cma01g00184 585 PANTHER METAL TRANSPORTER NRAMP1 8 507 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00184 Cma-Chr1:808703 Cma04g02382 Cma-Chr4:16477866 0 dispersed
Cma01g00184 Cma-Chr1:808703 Cma14g01056 Cma-Chr14:5585112 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00184 K21398 - csv:101209649 927.932