Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00185 ATGGCTTCTTACTCCTCTTGGTTGGATTCTGTTGACACTTCTCTGGATCTCAATCTTCATCCTTTAAGATTCTCCGGCGAAGCTCCGGTGACGAAGGAGAGGAATTATTTGGATCATGAGACGGTTTCTGTGAAAGAAGAGACGGGTGCTTTAATGGAGGAACTGAAGAGAGTGAGTGCAGAGAACAAGAAATTAACTGAAATGTTGACTGTTGTGTGTGAAAATTACAACACTTTGAGAGGTCATCTGGTGGATCAAATGAACAAAAATGGAGAAAAGGAAGTTTTTTGTTCGAAGAAGAGGAAATCTGAGAGTAGTAACAATAATAATATGGTTGGAATTAATGGGAATTCTGAGAGTAGTTCAACTGATGAAGAATCATACAAGAAGCCAAAACAGGAAACCATTAACAAATCTTCTAAAACCACTCGAGTTCAAGTCAAAATTGGTGCTTCTGATTCAAATTTGGTTGTTAAAGATGGATATCAATGGAGGAAATACGGCCAGAAGGTCACTAGAGATAATCCTTGTCCTCGAGCTTATTTTAAGTGTTCTTTTGCTCCGACCTGCCCTGTCAAAAAGAAGGTTCAGAGAAGTGTAGAAGATCAGTCGATTCTGGTAGCTACGTACGAAGGTGAACACAACCATCCACAATCTTCTCTGATGGAAGCCACCTCCGGCACTACTGCTGCTCGCTGCGTCGGCCTAACTCCAGCGGCGCCGACAAGTCCCCTCGACTCGAGAAAGCCCAAATCACCCTCTGAAGCTAAAACCACCTTCAGCCCAAGATTTCACTCGCCGGAAATGCAACAATTTCTCGTTGAACAGATGGCGTCTTCATTGACGAAGGACCCCAATTTCACGGCGGCGCTGGCGGCGGCGATTTCGGGGAAGATTTTCCCACATTAG 909 44.11 MASYSSWLDSVDTSLDLNLHPLRFSGEAPVTKERNYLDHETVSVKEETGALMEELKRVSAENKKLTEMLTVVCENYNTLRGHLVDQMNKNGEKEVFCSKKRKSESSNNNNMVGINGNSESSSTDEESYKKPKQETINKSSKTTRVQVKIGASDSNLVVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPTCPVKKKVQRSVEDQSILVATYEGEHNHPQSSLMEATSGTTAARCVGLTPAAPTSPLDSRKPKSPSEAKTTFSPRFHSPEMQQFLVEQMASSLTKDPNFTAALAAAISGKIFPH 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 822636 824640 + CmaCh01G001850.1 Cma01g00185 285878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00185 302 MobiDBLite consensus disorder prediction 98 141 - -
Cma01g00185 302 MobiDBLite consensus disorder prediction 123 137 - -
Cma01g00185 302 Gene3D WRKY domain 141 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma01g00185 302 PANTHER TRANSCRIPTION FACTOR 5 299 - -
Cma01g00185 302 Pfam WRKY DNA -binding domain 159 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma01g00185 302 SUPERFAMILY WRKY DNA-binding domain 156 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma01g00185 302 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 5 299 IPR044810 GO:0003700
Cma01g00185 302 MobiDBLite consensus disorder prediction 102 122 - -
Cma01g00185 302 ProSiteProfiles WRKY domain profile. 153 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma01g00185 302 MobiDBLite consensus disorder prediction 235 265 - -
Cma01g00185 302 SMART WRKY_cls 158 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00185 Cma14g01054 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00185 Cma-Chr1:822636 Cma05g00351 Cma-Chr5:1548177 4.04E-67 dispersed
Cma01g00185 Cma-Chr1:822636 Cma14g01054 Cma-Chr14:5555368 1.87E-151 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34229 PF03106 WRKY 4.10E-23 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00185 - - cpep:111787887 563.533