Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00188 ATGGCGGATCTCAAAGAGCGGTTGCTTCCTCCGAAACCTGCATCTGCTATAAATGTTAGGGAGGCTGTTAATAATAGGCCATCGGCCTCTGGAAGGGTGCCATTTCAAGGTGTGGATGTTTTAGGGCTGAAGAAGCGAGGCCAGGGACTAAGATCTTGGATCCGGGTAGATTCTTCTGGGAACTCCCAGATTATTGAGATCGATAAGTTCACTGTGATGCGTCGTTGTGATCTACCTGCACGTGATTTGCGCCTGCTTGACCCTTTGTTTGTTTACCCTTCCACAATTCTTGGTAGAGAGAAGGCTATTGTGGTCAATCTGGAGCAGATTCGATGTATCATAACAGCCGAAGAAGTTCTGCTGTTAAATTCCCTTGATAGTTATGTATTGCAGTATGTGGTAGAGCTACAAAGACGTTTGAAAACCACTGGGGTCGATGAGGTTTGGCAAAATGATGGAAATCATGGAGCTGACTTAAATCGAAGAAGAGGAAGTAGGAATTTCGATAATTTATTTGCAAACACCACCTCTCCTGATTATTTGCCCTTTGAGTTCAGGGCTTTAGAAGTTGCTTTGGAGGCAGCTTGTACATTTCTTGATTCCCAGGCTGCAGAATTAGAAATTGAAGCATATCCATTGCTAGATGAACTTACGTCGAAAATCAGTACATTAAATTTGGAGCGTGTCCGTCGCTTGAAAAGCAGACTTGTTGCCCTGACTCGTAGGGTTCAGAAGGTTAGGGATGAAATAGAGCAGCTCATGGATGATGATGGAGACATGGCAGAAATGTATCTCACTGAGAAGAAAATGAGAATGGAGTCCTTTGTTTACGGCGATCAGTCTGTGACTGGATACAGGCCAATCGATGGAGCATCTATTTCAGCTCCTGTTTCTCCTGTATCTTCACCGCCTGAAACTCGCAAGCTTGAGAAGAGCCTGAGCATTGCAAGGAGTCGGCATGAGAGCATGAGAAGTTCAGAAAGTGCCACTGAAAGTATAGAGGAGCTCGAGATGCTTCTTGAAGCATATTTTGTTGTCATTGACAGCACCTTGAACAAGTTGACATCGTTGAAGGAGTACATTGATGACACAGAAGATTTCATCAACATCCAGTTGGATAACGTACGGAATCAGTTGATCCAGTTTGAGCTACTGCTCACAACTGCAACATTCGTTGTTGCCATTTTCGGGGTGGTAGCTGGAATTTTTGGGATGAATTTTGAAATACCAATGTTTGGGAATCCTGATGCATTCAAGTGGGTTCTTCTAATTACAGGAGGCTTGCACTCAGCGGCGGCGATGACGACAATGGCGGGCTGGTTCTTGCTCCCTGTTTGCCCACAATCTCCTTATGTTTGGAATGGACATCGGTTTTCTAAGTGTTTTATGAATATGACCTTAGGTTTTGGAGTAAATGTTTTGACTGTCACCATTACTGTATTGCTCGGACTTACTCTGAAAAATGATGGAAGGAGACGGAGGAACTTTGAGAAAAGTCTACTGGAAAAAACTTTCGTGTACGTCCTTCCAGCCATTGGAGTATTCCTGTCACTTCTTGATATGATGTTTCTTCTGAGGAGATTACTCACCGGTGATGTTGTTGAATACCATGAGTGGTTAACAACAGCTTCATTATTTGCAGTCTGGACATGCACTGCAATCTTTGCAAATTGTTCTAACTTTGAACGCATCTTTACCAACAAAATGCTTTGTTCATGGTGGATTGTGAGAGCCATATTTGGGATTCTCGTTTTCGTTTCGACGTATGCAGACTTTGAGATACTCAGATCCCTGAACTACAGTTTTGTTATCTTGCTGGATGTTCTGTTTGGTGCATCAGGATTCATTATCAGATCAGAGCAAGCAAAAAGCAGTCCCATGGAAGATTCACTTCTATCTGTGGATGTGGACTTAGAGGAAAGTCGTATGGGGAATAATAAGGAAGATAAGCAAAGCTGTTGGAATCTTTTGACATTCAATTCTATCATGTCAGTTATGAATGACGGTGTTAAAAAGCAGCTGGATTTTAAAGATCTATTGCAGCTTCCAACTGATATGGATCCCTCTTTCTGCCACAACAAGTTGTTAATCTGCTGGAAAGGTCAATATTCGAGGAATGGCTCAAATCCATCGTTTTTTTGGGCAATCTGTCGTGCATATGGTTGGCCATATGTCTCTCTTGGTTTACTGAAGGTGCTTAATGATTGTCTTAGTTTTGTTGGACCAATGCTTCTCAATCGGTTGATTCGTTTTCTCCAACAAGGTAGTAGGACATCCGATGGCTATTTTCTTGCAATATCTTTGGGCCTCACCTCTATCTTCAAATCGTTTTTAGATACCCAATACACTTTCCATCTGTCCAAACTGAAGCTAAAGTTACGATCTAGTATCATGACCATCATCTACCAGAAATGTCTCTCCATTAGCTTAGCAGAACGATCACAATTTTCTTCTGGAGAGATCCAGACTTTTATGTCTGTTGATACTGATAGAACTGTCAACTTGTGCAACAGTTTTCATGATATGTGGAGCCTGCCTTTGCAAATAGGACTCGCATTGTATTTGTTATACGTTCAAGTCAAATTTGCCTTTCTTTCTGGAATTGCAATAACCATATTACTCATTCCAGTGAATAAGTGGATATCTGAAATGATAGCAAGGGCTACTGAGGAAATGATGAAGCAAAAAGATGAAAGAATAAGGAGAACCGGAGAAATATTGACTCACATTCATACTTTGAAGACACATGGGTGGGAGCTGCTTTTTTCTGATTGGTTGATGAAGACAAGATCTCTTGAAGTCTCCTATTTGAGTACACGGAAGTACCTAGATGCATGGTGCGTATTCTTTTGGGCTACTACACCAACCCTGTTTTCTCTGTTTACATTTGGACTTTTCTCACTGTTGGGATATAAACTTGATGCTGCAACGGTTTTCACCTGCCTGGCACTATTTAACACTTTGATTTCTCCTCTAAATTCATTCCCTTGGGTCATTAATGGAATGATTGATGCCATCATATCTCTTCGACGATTGACGAGATTTCTATCTTGCATTGAACCAGATAGAACAAATAGTTCTCCTTCCCCAATTATTAACAATGACCAGGCAGAATCTGATGTTAAAGAAACTGCAGTTTTCATGTCTAATTCATGTTCTTCTTGGTCCAGCAGCAAGGAAGTAGAACCAAATATTTTATTAAATAATTTGACTCTGGAGATCTACAAGGGTTCCTTTGTTGCCGTTATTGGAGAGGTTGGTTCAGGAAAAACATCCTTATTGAGTGCAATCCTGGGAGAAATGCGGCTTCTACATGGTTCTGTACATGCAAACAGATCGATTTCATATGTATCCCAGGTCCCATGGATACTTTCTGGAACAATTCGTGATAACATATTATTTGGAAAGGATTATGACCCACAAAGATACTGGGATACTTTATGGGCTTGTGCTCTAGATGTTGATATTTCATTAATGGCTGGAGGTGACATGGCTCATATTGGAGAAAGAGGGGTCAACTTATCTGGGGGCCAGAGGGCCCGATTAGCCATGGCAAGGGCTCTTTATCATGGAGTGGATATTCTTATGCTTGATGATGTTCTTAGTGCTGTAGATGCACAAGTTGCTGATTGGATATTACGTAATGCCATTTTGGGTCCTTTGGCACAGAAAAGAACACGCATACTTAGTACCCATAATCATCAGGCAATATATTCTGCTGATATGGTTATTGTAATGGATAAAGGAAAACTAAAGTGGGTTGGAAATCCATCCAACTTGTCGGGTTCATCTTATGTTGCATTTTCCAAGTTGAATGAACTTGATACAACCGTACGTATTCAAGGACAAAACAGCCAAATAATTGAGAGTACTGATACTCACAAACATTTGGTTGATGAGAAAGATGACAAGAATGCTTCAAATGGAGTAACTGAGACTATTGATGATGAGATGCGGAAAGAGGGCAGAGTTCAATTCAGTGTATACAAGAACTATGCAGCATTTTGTGGTTGGTTCATTACAATCATTATATGCATTTCTGCATTTTTAATGCAAGCTTCACGCAACGGGAATGATCTTTGGCTTTCCTTTTGGGTTGACGCAACAGGAAGAAGTCAGATGGATAGTCCAACAACCTTTTACCTAGTTACTCTTTGCATCTTTTGCATAATAAACTCATTCTTTACTTTGCTGAGAGCATTCTCATTTGCATTTGGTGGCTTGCAAGCTGCAGTAAAGGTGCATGATACATTGTTGAATAAGCTTATTCATGCACCTATTCAGTTTTTTTATCAAACACCAGGCGGACGAATCCTGAACAGGTTGTCTTCTGATCTCTATACTATTGACAATTCTCTTCCATTCATCCTCAACATCCTCCTAGCAAATTTTGTTGGCTTGTTGGGAATTGCAATAGTCCTTTCATATGTACAGGTGTTCTTCTTGTTGTTGCTCCTTCCATTCGGGTATATCTACAGTAAGCTTCAGTTCTTTTACAGGTCCACAGCTCGGGAATTGAGACGGCTCGATAGTGTTTCCTGTTCTCCCATATATTCCTCTTTTACTGAGATTCTTGATGGGTCTGCAACTATTAGAGCGTTCAAGTGTGAGGATTTCTTTTTCACAAGATTCACAAAGCATATCATATTGTATCAACAAACCAGTTTCTCAGAAACAACAGCAAGTTTGTGGCTATCCCTCCGACTTCAGTTATTAGCAGGTTCTATCATCTCGTTTATTGCGGTTACGGCTGTTATTGGATCTCTAGGAAATCTCTCAATAAACTTTGGTACACCAGGCCTGGTTGGACTGGCACTTTCATATGCTGCTCCAATTGTTTCCTTGTTGGGGAACTTTTTGACAAGTTTTACTGAAACAGAGAAAGAAATGGTTTCTATGGAAAGAGCTCTTCAGTATATTGACATTCCTCAAGAAGATTTGGATGGATGCCGATGCTTAGATTCAGAATGGCCATGTCAAGGAAGAATTGAATTTCAAAATGTTACTTTGAGATATAAACCATCTTTGCCAGCAGCACTTCGTGATATTTCTTTTACAATCTTGGGAGGAGCACAGGTAGGCATAATTGGTAGAACAGGTGCTGGAAAGTCTAGTATCTTGAATTCTCTATTCCGCCTTATGCCAATATGTGCCGGGCATATACTGGTGGATGGGATAGATATTGCTGAAGTTCCTGTTAGAGATCTACGCACGCGCTTTGCTGTTGTTCCTCAGACTCCATTTTTGTTTGAAGGAACATTAAGGGAAAATCTGGATCCGTTCCACTTGTATGACGATCAAAAAATTTTGGAAGCTCTTGAAAGATGTTATATCAAGAGGGAAATTGAAGCAGCTGGAGGATTAGATTTTCATGTTAAGGAATCTGGGTTATCGTTTTCTGCTGGGCAACGACAGCTTCTTTGCCTTGCACGTGCACTTCTCAAGTCCTCTAAGGTGCTTTGTTTGGATGAATGCACGGCAAACGTTGATACTCAGACAGCATCATTGCTGCAAAATGCTATATCCAATGAATGCAGAGGGATAACAGTGGTCACGATTGCCCATCGTATTTCCACCGTCTTAAACATGGATGATATTCTGATTCTTGACTATGGGATCCTGGTGGAACAAGGAAGCCCCCAATCTCTGCTGAAAAAGGAGTCCTCCAAATTTTCAAGCTTTGTTAAGGCGTCTAACATGTGA 5703 40.96 MADLKERLLPPKPASAINVREAVNNRPSASGRVPFQGVDVLGLKKRGQGLRSWIRVDSSGNSQIIEIDKFTVMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITAEEVLLLNSLDSYVLQYVVELQRRLKTTGVDEVWQNDGNHGADLNRRRGSRNFDNLFANTTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKMRMESFVYGDQSVTGYRPIDGASISAPVSPVSSPPETRKLEKSLSIARSRHESMRSSESATESIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPMFGNPDAFKWVLLITGGLHSAAAMTTMAGWFLLPVCPQSPYVWNGHRFSKCFMNMTLGFGVNVLTVTITVLLGLTLKNDGRRRRNFEKSLLEKTFVYVLPAIGVFLSLLDMMFLLRRLLTGDVVEYHEWLTTASLFAVWTCTAIFANCSNFERIFTNKMLCSWWIVRAIFGILVFVSTYADFEILRSLNYSFVILLDVLFGASGFIIRSEQAKSSPMEDSLLSVDVDLEESRMGNNKEDKQSCWNLLTFNSIMSVMNDGVKKQLDFKDLLQLPTDMDPSFCHNKLLICWKGQYSRNGSNPSFFWAICRAYGWPYVSLGLLKVLNDCLSFVGPMLLNRLIRFLQQGSRTSDGYFLAISLGLTSIFKSFLDTQYTFHLSKLKLKLRSSIMTIIYQKCLSISLAERSQFSSGEIQTFMSVDTDRTVNLCNSFHDMWSLPLQIGLALYLLYVQVKFAFLSGIAITILLIPVNKWISEMIARATEEMMKQKDERIRRTGEILTHIHTLKTHGWELLFSDWLMKTRSLEVSYLSTRKYLDAWCVFFWATTPTLFSLFTFGLFSLLGYKLDAATVFTCLALFNTLISPLNSFPWVINGMIDAIISLRRLTRFLSCIEPDRTNSSPSPIINNDQAESDVKETAVFMSNSCSSWSSSKEVEPNILLNNLTLEIYKGSFVAVIGEVGSGKTSLLSAILGEMRLLHGSVHANRSISYVSQVPWILSGTIRDNILFGKDYDPQRYWDTLWACALDVDISLMAGGDMAHIGERGVNLSGGQRARLAMARALYHGVDILMLDDVLSAVDAQVADWILRNAILGPLAQKRTRILSTHNHQAIYSADMVIVMDKGKLKWVGNPSNLSGSSYVAFSKLNELDTTVRIQGQNSQIIESTDTHKHLVDEKDDKNASNGVTETIDDEMRKEGRVQFSVYKNYAAFCGWFITIIICISAFLMQASRNGNDLWLSFWVDATGRSQMDSPTTFYLVTLCIFCIINSFFTLLRAFSFAFGGLQAAVKVHDTLLNKLIHAPIQFFYQTPGGRILNRLSSDLYTIDNSLPFILNILLANFVGLLGIAIVLSYVQVFFLLLLLPFGYIYSKLQFFYRSTARELRRLDSVSCSPIYSSFTEILDGSATIRAFKCEDFFFTRFTKHIILYQQTSFSETTASLWLSLRLQLLAGSIISFIAVTAVIGSLGNLSINFGTPGLVGLALSYAAPIVSLLGNFLTSFTETEKEMVSMERALQYIDIPQEDLDGCRCLDSEWPCQGRIEFQNVTLRYKPSLPAALRDISFTILGGAQVGIIGRTGAGKSSILNSLFRLMPICAGHILVDGIDIAEVPVRDLRTRFAVVPQTPFLFEGTLRENLDPFHLYDDQKILEALERCYIKREIEAAGGLDFHVKESGLSFSAGQRQLLCLARALLKSSKVLCLDECTANVDTQTASLLQNAISNECRGITVVTIAHRISTVLNMDDILILDYGILVEQGSPQSLLKKESSKFSSFVKASNM 1900
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 840566 868766 - CmaCh01G001880.1 Cma01g00188 285881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00188 1900 SUPERFAMILY ABC transporter transmembrane region 1338 1645 IPR036640 GO:0005524|GO:0016021
Cma01g00188 1900 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1041 1273 IPR003439 GO:0005524
Cma01g00188 1900 Gene3D Magnesium transport protein CorA, transmembrane region 130 379 - -
Cma01g00188 1900 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 729 1004 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma01g00188 1900 SUPERFAMILY ABC transporter transmembrane region 713 1012 IPR036640 GO:0005524|GO:0016021
Cma01g00188 1900 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1663 1896 IPR003439 GO:0005524
Cma01g00188 1900 PANTHER MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 7 655 1881 - -
Cma01g00188 1900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1657 1888 IPR027417 -
Cma01g00188 1900 Gene3D - 1021 1298 IPR027417 -
Cma01g00188 1900 ProSitePatterns ABC transporters family signature. 1799 1813 IPR017871 GO:0005524
Cma01g00188 1900 Pfam ABC transporter 1067 1199 IPR003439 GO:0005524
Cma01g00188 1900 Gene3D ABC transporter type 1, transmembrane domain 713 1018 IPR036640 GO:0005524|GO:0016021
Cma01g00188 1900 Gene3D - 1650 1898 IPR027417 -
Cma01g00188 1900 Coils Coil 229 256 - -
Cma01g00188 1900 CDD ABCC_MRP_domain2 1661 1880 - -
Cma01g00188 1900 Pfam ABC transporter 1680 1827 IPR003439 GO:0005524
Cma01g00188 1900 Gene3D - 41 124 - -
Cma01g00188 1900 CDD ABC_6TM_MRP7_D1_like 726 1012 - -
Cma01g00188 1900 Gene3D ABC transporter type 1, transmembrane domain 1308 1646 IPR036640 GO:0005524|GO:0016021
Cma01g00188 1900 SMART AAA_5 1689 1879 IPR003593 -
Cma01g00188 1900 SMART AAA_5 1076 1250 IPR003593 -
Cma01g00188 1900 ProSitePatterns ABC transporters family signature. 1174 1188 IPR017871 GO:0005524
Cma01g00188 1900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1063 1263 IPR027417 -
Cma01g00188 1900 CDD ABCC_MRP_domain1 1059 1250 - -
Cma01g00188 1900 Gene3D Magnesium transport protein CorA, transmembrane region 386 442 - -
Cma01g00188 1900 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 385 429 IPR045863 -
Cma01g00188 1900 CDD Mrs2_Mfm1p-like 53 443 IPR039204 -
Cma01g00188 1900 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 655 1881 - -
Cma01g00188 1900 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1342 1628 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma01g00188 1900 CDD ABC_6TM_MRP7_D2_like 1341 1640 - -
Cma01g00188 1900 Pfam ABC transporter transmembrane region 728 992 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma01g00188 1900 Pfam ABC transporter transmembrane region 1342 1595 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00188 Cma-Chr1:840566 Cma03g01437 Cma-Chr3:8992350 0 dispersed
Cma12g00103 Cma-Chr12:404844 Cma01g00188 Cma-Chr1:840566 4.22E-87 dispersed
Cma17g00187 Cma-Chr17:979088 Cma01g00188 Cma-Chr1:840566 4.93E-107 dispersed
Cma19g00058 Cma-Chr19:314382 Cma01g00188 Cma-Chr1:840566 2.24E-101 dispersed
Cma19g00542 Cma-Chr19:6234736 Cma01g00188 Cma-Chr1:840566 6.87E-30 dispersed
Cma01g00188 Cma-Chr1:840566 Cma14g01051 Cma-Chr14:5538346 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00188 K05674 - csv:101211576 2450.24