Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g00188 | ATGGCGGATCTCAAAGAGCGGTTGCTTCCTCCGAAACCTGCATCTGCTATAAATGTTAGGGAGGCTGTTAATAATAGGCCATCGGCCTCTGGAAGGGTGCCATTTCAAGGTGTGGATGTTTTAGGGCTGAAGAAGCGAGGCCAGGGACTAAGATCTTGGATCCGGGTAGATTCTTCTGGGAACTCCCAGATTATTGAGATCGATAAGTTCACTGTGATGCGTCGTTGTGATCTACCTGCACGTGATTTGCGCCTGCTTGACCCTTTGTTTGTTTACCCTTCCACAATTCTTGGTAGAGAGAAGGCTATTGTGGTCAATCTGGAGCAGATTCGATGTATCATAACAGCCGAAGAAGTTCTGCTGTTAAATTCCCTTGATAGTTATGTATTGCAGTATGTGGTAGAGCTACAAAGACGTTTGAAAACCACTGGGGTCGATGAGGTTTGGCAAAATGATGGAAATCATGGAGCTGACTTAAATCGAAGAAGAGGAAGTAGGAATTTCGATAATTTATTTGCAAACACCACCTCTCCTGATTATTTGCCCTTTGAGTTCAGGGCTTTAGAAGTTGCTTTGGAGGCAGCTTGTACATTTCTTGATTCCCAGGCTGCAGAATTAGAAATTGAAGCATATCCATTGCTAGATGAACTTACGTCGAAAATCAGTACATTAAATTTGGAGCGTGTCCGTCGCTTGAAAAGCAGACTTGTTGCCCTGACTCGTAGGGTTCAGAAGGTTAGGGATGAAATAGAGCAGCTCATGGATGATGATGGAGACATGGCAGAAATGTATCTCACTGAGAAGAAAATGAGAATGGAGTCCTTTGTTTACGGCGATCAGTCTGTGACTGGATACAGGCCAATCGATGGAGCATCTATTTCAGCTCCTGTTTCTCCTGTATCTTCACCGCCTGAAACTCGCAAGCTTGAGAAGAGCCTGAGCATTGCAAGGAGTCGGCATGAGAGCATGAGAAGTTCAGAAAGTGCCACTGAAAGTATAGAGGAGCTCGAGATGCTTCTTGAAGCATATTTTGTTGTCATTGACAGCACCTTGAACAAGTTGACATCGTTGAAGGAGTACATTGATGACACAGAAGATTTCATCAACATCCAGTTGGATAACGTACGGAATCAGTTGATCCAGTTTGAGCTACTGCTCACAACTGCAACATTCGTTGTTGCCATTTTCGGGGTGGTAGCTGGAATTTTTGGGATGAATTTTGAAATACCAATGTTTGGGAATCCTGATGCATTCAAGTGGGTTCTTCTAATTACAGGAGGCTTGCACTCAGCGGCGGCGATGACGACAATGGCGGGCTGGTTCTTGCTCCCTGTTTGCCCACAATCTCCTTATGTTTGGAATGGACATCGGTTTTCTAAGTGTTTTATGAATATGACCTTAGGTTTTGGAGTAAATGTTTTGACTGTCACCATTACTGTATTGCTCGGACTTACTCTGAAAAATGATGGAAGGAGACGGAGGAACTTTGAGAAAAGTCTACTGGAAAAAACTTTCGTGTACGTCCTTCCAGCCATTGGAGTATTCCTGTCACTTCTTGATATGATGTTTCTTCTGAGGAGATTACTCACCGGTGATGTTGTTGAATACCATGAGTGGTTAACAACAGCTTCATTATTTGCAGTCTGGACATGCACTGCAATCTTTGCAAATTGTTCTAACTTTGAACGCATCTTTACCAACAAAATGCTTTGTTCATGGTGGATTGTGAGAGCCATATTTGGGATTCTCGTTTTCGTTTCGACGTATGCAGACTTTGAGATACTCAGATCCCTGAACTACAGTTTTGTTATCTTGCTGGATGTTCTGTTTGGTGCATCAGGATTCATTATCAGATCAGAGCAAGCAAAAAGCAGTCCCATGGAAGATTCACTTCTATCTGTGGATGTGGACTTAGAGGAAAGTCGTATGGGGAATAATAAGGAAGATAAGCAAAGCTGTTGGAATCTTTTGACATTCAATTCTATCATGTCAGTTATGAATGACGGTGTTAAAAAGCAGCTGGATTTTAAAGATCTATTGCAGCTTCCAACTGATATGGATCCCTCTTTCTGCCACAACAAGTTGTTAATCTGCTGGAAAGGTCAATATTCGAGGAATGGCTCAAATCCATCGTTTTTTTGGGCAATCTGTCGTGCATATGGTTGGCCATATGTCTCTCTTGGTTTACTGAAGGTGCTTAATGATTGTCTTAGTTTTGTTGGACCAATGCTTCTCAATCGGTTGATTCGTTTTCTCCAACAAGGTAGTAGGACATCCGATGGCTATTTTCTTGCAATATCTTTGGGCCTCACCTCTATCTTCAAATCGTTTTTAGATACCCAATACACTTTCCATCTGTCCAAACTGAAGCTAAAGTTACGATCTAGTATCATGACCATCATCTACCAGAAATGTCTCTCCATTAGCTTAGCAGAACGATCACAATTTTCTTCTGGAGAGATCCAGACTTTTATGTCTGTTGATACTGATAGAACTGTCAACTTGTGCAACAGTTTTCATGATATGTGGAGCCTGCCTTTGCAAATAGGACTCGCATTGTATTTGTTATACGTTCAAGTCAAATTTGCCTTTCTTTCTGGAATTGCAATAACCATATTACTCATTCCAGTGAATAAGTGGATATCTGAAATGATAGCAAGGGCTACTGAGGAAATGATGAAGCAAAAAGATGAAAGAATAAGGAGAACCGGAGAAATATTGACTCACATTCATACTTTGAAGACACATGGGTGGGAGCTGCTTTTTTCTGATTGGTTGATGAAGACAAGATCTCTTGAAGTCTCCTATTTGAGTACACGGAAGTACCTAGATGCATGGTGCGTATTCTTTTGGGCTACTACACCAACCCTGTTTTCTCTGTTTACATTTGGACTTTTCTCACTGTTGGGATATAAACTTGATGCTGCAACGGTTTTCACCTGCCTGGCACTATTTAACACTTTGATTTCTCCTCTAAATTCATTCCCTTGGGTCATTAATGGAATGATTGATGCCATCATATCTCTTCGACGATTGACGAGATTTCTATCTTGCATTGAACCAGATAGAACAAATAGTTCTCCTTCCCCAATTATTAACAATGACCAGGCAGAATCTGATGTTAAAGAAACTGCAGTTTTCATGTCTAATTCATGTTCTTCTTGGTCCAGCAGCAAGGAAGTAGAACCAAATATTTTATTAAATAATTTGACTCTGGAGATCTACAAGGGTTCCTTTGTTGCCGTTATTGGAGAGGTTGGTTCAGGAAAAACATCCTTATTGAGTGCAATCCTGGGAGAAATGCGGCTTCTACATGGTTCTGTACATGCAAACAGATCGATTTCATATGTATCCCAGGTCCCATGGATACTTTCTGGAACAATTCGTGATAACATATTATTTGGAAAGGATTATGACCCACAAAGATACTGGGATACTTTATGGGCTTGTGCTCTAGATGTTGATATTTCATTAATGGCTGGAGGTGACATGGCTCATATTGGAGAAAGAGGGGTCAACTTATCTGGGGGCCAGAGGGCCCGATTAGCCATGGCAAGGGCTCTTTATCATGGAGTGGATATTCTTATGCTTGATGATGTTCTTAGTGCTGTAGATGCACAAGTTGCTGATTGGATATTACGTAATGCCATTTTGGGTCCTTTGGCACAGAAAAGAACACGCATACTTAGTACCCATAATCATCAGGCAATATATTCTGCTGATATGGTTATTGTAATGGATAAAGGAAAACTAAAGTGGGTTGGAAATCCATCCAACTTGTCGGGTTCATCTTATGTTGCATTTTCCAAGTTGAATGAACTTGATACAACCGTACGTATTCAAGGACAAAACAGCCAAATAATTGAGAGTACTGATACTCACAAACATTTGGTTGATGAGAAAGATGACAAGAATGCTTCAAATGGAGTAACTGAGACTATTGATGATGAGATGCGGAAAGAGGGCAGAGTTCAATTCAGTGTATACAAGAACTATGCAGCATTTTGTGGTTGGTTCATTACAATCATTATATGCATTTCTGCATTTTTAATGCAAGCTTCACGCAACGGGAATGATCTTTGGCTTTCCTTTTGGGTTGACGCAACAGGAAGAAGTCAGATGGATAGTCCAACAACCTTTTACCTAGTTACTCTTTGCATCTTTTGCATAATAAACTCATTCTTTACTTTGCTGAGAGCATTCTCATTTGCATTTGGTGGCTTGCAAGCTGCAGTAAAGGTGCATGATACATTGTTGAATAAGCTTATTCATGCACCTATTCAGTTTTTTTATCAAACACCAGGCGGACGAATCCTGAACAGGTTGTCTTCTGATCTCTATACTATTGACAATTCTCTTCCATTCATCCTCAACATCCTCCTAGCAAATTTTGTTGGCTTGTTGGGAATTGCAATAGTCCTTTCATATGTACAGGTGTTCTTCTTGTTGTTGCTCCTTCCATTCGGGTATATCTACAGTAAGCTTCAGTTCTTTTACAGGTCCACAGCTCGGGAATTGAGACGGCTCGATAGTGTTTCCTGTTCTCCCATATATTCCTCTTTTACTGAGATTCTTGATGGGTCTGCAACTATTAGAGCGTTCAAGTGTGAGGATTTCTTTTTCACAAGATTCACAAAGCATATCATATTGTATCAACAAACCAGTTTCTCAGAAACAACAGCAAGTTTGTGGCTATCCCTCCGACTTCAGTTATTAGCAGGTTCTATCATCTCGTTTATTGCGGTTACGGCTGTTATTGGATCTCTAGGAAATCTCTCAATAAACTTTGGTACACCAGGCCTGGTTGGACTGGCACTTTCATATGCTGCTCCAATTGTTTCCTTGTTGGGGAACTTTTTGACAAGTTTTACTGAAACAGAGAAAGAAATGGTTTCTATGGAAAGAGCTCTTCAGTATATTGACATTCCTCAAGAAGATTTGGATGGATGCCGATGCTTAGATTCAGAATGGCCATGTCAAGGAAGAATTGAATTTCAAAATGTTACTTTGAGATATAAACCATCTTTGCCAGCAGCACTTCGTGATATTTCTTTTACAATCTTGGGAGGAGCACAGGTAGGCATAATTGGTAGAACAGGTGCTGGAAAGTCTAGTATCTTGAATTCTCTATTCCGCCTTATGCCAATATGTGCCGGGCATATACTGGTGGATGGGATAGATATTGCTGAAGTTCCTGTTAGAGATCTACGCACGCGCTTTGCTGTTGTTCCTCAGACTCCATTTTTGTTTGAAGGAACATTAAGGGAAAATCTGGATCCGTTCCACTTGTATGACGATCAAAAAATTTTGGAAGCTCTTGAAAGATGTTATATCAAGAGGGAAATTGAAGCAGCTGGAGGATTAGATTTTCATGTTAAGGAATCTGGGTTATCGTTTTCTGCTGGGCAACGACAGCTTCTTTGCCTTGCACGTGCACTTCTCAAGTCCTCTAAGGTGCTTTGTTTGGATGAATGCACGGCAAACGTTGATACTCAGACAGCATCATTGCTGCAAAATGCTATATCCAATGAATGCAGAGGGATAACAGTGGTCACGATTGCCCATCGTATTTCCACCGTCTTAAACATGGATGATATTCTGATTCTTGACTATGGGATCCTGGTGGAACAAGGAAGCCCCCAATCTCTGCTGAAAAAGGAGTCCTCCAAATTTTCAAGCTTTGTTAAGGCGTCTAACATGTGA | 5703 | 40.96 | MADLKERLLPPKPASAINVREAVNNRPSASGRVPFQGVDVLGLKKRGQGLRSWIRVDSSGNSQIIEIDKFTVMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITAEEVLLLNSLDSYVLQYVVELQRRLKTTGVDEVWQNDGNHGADLNRRRGSRNFDNLFANTTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKMRMESFVYGDQSVTGYRPIDGASISAPVSPVSSPPETRKLEKSLSIARSRHESMRSSESATESIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPMFGNPDAFKWVLLITGGLHSAAAMTTMAGWFLLPVCPQSPYVWNGHRFSKCFMNMTLGFGVNVLTVTITVLLGLTLKNDGRRRRNFEKSLLEKTFVYVLPAIGVFLSLLDMMFLLRRLLTGDVVEYHEWLTTASLFAVWTCTAIFANCSNFERIFTNKMLCSWWIVRAIFGILVFVSTYADFEILRSLNYSFVILLDVLFGASGFIIRSEQAKSSPMEDSLLSVDVDLEESRMGNNKEDKQSCWNLLTFNSIMSVMNDGVKKQLDFKDLLQLPTDMDPSFCHNKLLICWKGQYSRNGSNPSFFWAICRAYGWPYVSLGLLKVLNDCLSFVGPMLLNRLIRFLQQGSRTSDGYFLAISLGLTSIFKSFLDTQYTFHLSKLKLKLRSSIMTIIYQKCLSISLAERSQFSSGEIQTFMSVDTDRTVNLCNSFHDMWSLPLQIGLALYLLYVQVKFAFLSGIAITILLIPVNKWISEMIARATEEMMKQKDERIRRTGEILTHIHTLKTHGWELLFSDWLMKTRSLEVSYLSTRKYLDAWCVFFWATTPTLFSLFTFGLFSLLGYKLDAATVFTCLALFNTLISPLNSFPWVINGMIDAIISLRRLTRFLSCIEPDRTNSSPSPIINNDQAESDVKETAVFMSNSCSSWSSSKEVEPNILLNNLTLEIYKGSFVAVIGEVGSGKTSLLSAILGEMRLLHGSVHANRSISYVSQVPWILSGTIRDNILFGKDYDPQRYWDTLWACALDVDISLMAGGDMAHIGERGVNLSGGQRARLAMARALYHGVDILMLDDVLSAVDAQVADWILRNAILGPLAQKRTRILSTHNHQAIYSADMVIVMDKGKLKWVGNPSNLSGSSYVAFSKLNELDTTVRIQGQNSQIIESTDTHKHLVDEKDDKNASNGVTETIDDEMRKEGRVQFSVYKNYAAFCGWFITIIICISAFLMQASRNGNDLWLSFWVDATGRSQMDSPTTFYLVTLCIFCIINSFFTLLRAFSFAFGGLQAAVKVHDTLLNKLIHAPIQFFYQTPGGRILNRLSSDLYTIDNSLPFILNILLANFVGLLGIAIVLSYVQVFFLLLLLPFGYIYSKLQFFYRSTARELRRLDSVSCSPIYSSFTEILDGSATIRAFKCEDFFFTRFTKHIILYQQTSFSETTASLWLSLRLQLLAGSIISFIAVTAVIGSLGNLSINFGTPGLVGLALSYAAPIVSLLGNFLTSFTETEKEMVSMERALQYIDIPQEDLDGCRCLDSEWPCQGRIEFQNVTLRYKPSLPAALRDISFTILGGAQVGIIGRTGAGKSSILNSLFRLMPICAGHILVDGIDIAEVPVRDLRTRFAVVPQTPFLFEGTLRENLDPFHLYDDQKILEALERCYIKREIEAAGGLDFHVKESGLSFSAGQRQLLCLARALLKSSKVLCLDECTANVDTQTASLLQNAISNECRGITVVTIAHRISTVLNMDDILILDYGILVEQGSPQSLLKKESSKFSSFVKASNM | 1900 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 840566 | 868766 | - | CmaCh01G001880.1 | Cma01g00188 | 285881 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g00188 | 1900 | SUPERFAMILY | ABC transporter transmembrane region | 1338 | 1645 | IPR036640 | GO:0005524|GO:0016021 | |
Cma01g00188 | 1900 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1041 | 1273 | IPR003439 | GO:0005524 | |
Cma01g00188 | 1900 | Gene3D | Magnesium transport protein CorA, transmembrane region | 130 | 379 | - | - | |
Cma01g00188 | 1900 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 729 | 1004 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Cma01g00188 | 1900 | SUPERFAMILY | ABC transporter transmembrane region | 713 | 1012 | IPR036640 | GO:0005524|GO:0016021 | |
Cma01g00188 | 1900 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1663 | 1896 | IPR003439 | GO:0005524 | |
Cma01g00188 | 1900 | PANTHER | MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 7 | 655 | 1881 | - | - | |
Cma01g00188 | 1900 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1657 | 1888 | IPR027417 | - | |
Cma01g00188 | 1900 | Gene3D | - | 1021 | 1298 | IPR027417 | - | |
Cma01g00188 | 1900 | ProSitePatterns | ABC transporters family signature. | 1799 | 1813 | IPR017871 | GO:0005524 | |
Cma01g00188 | 1900 | Pfam | ABC transporter | 1067 | 1199 | IPR003439 | GO:0005524 | |
Cma01g00188 | 1900 | Gene3D | ABC transporter type 1, transmembrane domain | 713 | 1018 | IPR036640 | GO:0005524|GO:0016021 | |
Cma01g00188 | 1900 | Gene3D | - | 1650 | 1898 | IPR027417 | - | |
Cma01g00188 | 1900 | Coils | Coil | 229 | 256 | - | - | |
Cma01g00188 | 1900 | CDD | ABCC_MRP_domain2 | 1661 | 1880 | - | - | |
Cma01g00188 | 1900 | Pfam | ABC transporter | 1680 | 1827 | IPR003439 | GO:0005524 | |
Cma01g00188 | 1900 | Gene3D | - | 41 | 124 | - | - | |
Cma01g00188 | 1900 | CDD | ABC_6TM_MRP7_D1_like | 726 | 1012 | - | - | |
Cma01g00188 | 1900 | Gene3D | ABC transporter type 1, transmembrane domain | 1308 | 1646 | IPR036640 | GO:0005524|GO:0016021 | |
Cma01g00188 | 1900 | SMART | AAA_5 | 1689 | 1879 | IPR003593 | - | |
Cma01g00188 | 1900 | SMART | AAA_5 | 1076 | 1250 | IPR003593 | - | |
Cma01g00188 | 1900 | ProSitePatterns | ABC transporters family signature. | 1174 | 1188 | IPR017871 | GO:0005524 | |
Cma01g00188 | 1900 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1063 | 1263 | IPR027417 | - | |
Cma01g00188 | 1900 | CDD | ABCC_MRP_domain1 | 1059 | 1250 | - | - | |
Cma01g00188 | 1900 | Gene3D | Magnesium transport protein CorA, transmembrane region | 386 | 442 | - | - | |
Cma01g00188 | 1900 | SUPERFAMILY | Magnesium transport protein CorA, transmembrane region | 385 | 429 | IPR045863 | - | |
Cma01g00188 | 1900 | CDD | Mrs2_Mfm1p-like | 53 | 443 | IPR039204 | - | |
Cma01g00188 | 1900 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY C | 655 | 1881 | - | - | |
Cma01g00188 | 1900 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 1342 | 1628 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Cma01g00188 | 1900 | CDD | ABC_6TM_MRP7_D2_like | 1341 | 1640 | - | - | |
Cma01g00188 | 1900 | Pfam | ABC transporter transmembrane region | 728 | 992 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Cma01g00188 | 1900 | Pfam | ABC transporter transmembrane region | 1342 | 1595 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00188 | Cma-Chr1:840566 | Cma03g01437 | Cma-Chr3:8992350 | 0 | dispersed | |
Cma12g00103 | Cma-Chr12:404844 | Cma01g00188 | Cma-Chr1:840566 | 4.22E-87 | dispersed | |
Cma17g00187 | Cma-Chr17:979088 | Cma01g00188 | Cma-Chr1:840566 | 4.93E-107 | dispersed | |
Cma19g00058 | Cma-Chr19:314382 | Cma01g00188 | Cma-Chr1:840566 | 2.24E-101 | dispersed | |
Cma19g00542 | Cma-Chr19:6234736 | Cma01g00188 | Cma-Chr1:840566 | 6.87E-30 | dispersed | |
Cma01g00188 | Cma-Chr1:840566 | Cma14g01051 | Cma-Chr14:5538346 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g00188 | K05674 | - | csv:101211576 | 2450.24 |