Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00193 ATGGAGAAGAAGACTTATCCGATTGGGGAAGATTCTTATGTTCTGTACGAGGAGGTTGGGCAGGGGGTGAGTGCTTCAGTTCACCGTGCTCTTTGTAAACCTCTTAATGAGATCGTCGCCATCAAGATACTCGATTTTGAGCGTGAGAATTGTGATCTGGTTAGCATTTATCGTGAAGTACAGACAATGATCTTGGTTGACCACCCAAATGTTCTTAAATCACACTGCTCCTTTGTCAATGGACATAATTTGTGGATTGTTATGCCATACATGTCTGGAGGTTCATGTCTTCACATATTGAAGGCTGCATATCCTGATGGTTTCGAGGAAGTGGTGATAGCAACAATATTACGAGAAGTGTTGAAGGGAGTTGAATATCTTCATAATCATGGACATATACATCGGGATATAAAAGCAGGGAATGTTCTTATTGATTCACGTGGTGCAATCAAGCTAGGGGATTTTGGTGTTTCTGCTTGCCTTTTTGACTCAGGTGATAGGCAACGTGTGAGGAATACATTCGTGGGGACACCATGCTGGATGGCACCTGAAGTTATGGAGCAATTAAATGGTTATGACTTCAAGGCTGACATCTGGTCTTTTGCTATAACTGGGTTAGAGCTTGCCCATGGTCATGCTCCTTTCTCAAAATATCCTCCGATGAAGGTATTGATGATGACCTTGCAAAATGCACCCCCTGGCCTTGATTATGAAAGGGACAGAAAATTTTCAAAGTCTTTTAAGCAGATGATTGCGAGTTGCTTGGTGAAAGATCCTTCAAAACGACCTTCTGCAAGTAAACTGCTGAAGCATTCATTTTTTAGGCAAGCCCGATCAAGTGATTATATTGCACGTACCCTTTTGGAAGGGCTACCTGTTCTTGGTGATCGTATAAAGGCACTTAAGAGAAAGGAAGAAGATATGCTTGCACAAAAGAAAATGCCAGATGGAAAGAAGGAAGAATTATCTCAGAATGAATATAAACGAGGAATCAGTGGATGGAATTTCAATCTTGATGATTTAAAGGCTCAGGCATCTCTGATTCAGGAATTTGAAGAATCCATAAGTGAAATCAGTGAAGTAGGGAGCTCCAGTAACTTATCTTCTCTTGATGTGCAAGAAAGGAAATTACAATATCAAAATTCTTCAGAACTTTCAGATACTGAAGAGAATGGCATGTTGCGGAGACTACCCTCTATGAAAGCTAATGATTCATTAGATGGTAGAAGATCTATGAATGATTCAACAATTATTGGTCCTTGCTCCCAACAACTTTCTTCGCCTCGCAATGATTATCAAACTGAGAATGGTTCCTGTGAAGAGCTTCCTTTGGAGAACAGCAAAAGAATACTGGGGAGTACTCCTAATTCTAGTCAACATAAAAGAAATGTTTCTTCCAATAACACCATTCAACAAGAAACCACTTCACCTCTGAACAGAAGAGAAAGTTACGAGTCAGAAAAGAGTGTTGCAAATGGCAGTGTTGCAATTGGAATAACTTCTCAAGCTGTAGATGATGTGCTTTCTGATTCTTATTCTAAAGATCCGAAGTCAGCATTAGTAAGTCCAGCAACAAATGACGAGGAACAGGATGAGAAAGCAAAGGTACCAGTTATTCAGCAGAAAGGGCGTTTCAAAGTTACTTCGGAGAATGTTGATGTAGAAAAGGCAGTTGCACCCCCTCTTCTGCAAAAAAGTCACAGTATGCAGGTGATTACCTCAAATTCTGCTACTCCTCTTCTACCTTCTAATCTACCAACTCCTCTACTGACACCTCTACCCTCATCTGATGCTATACCAATTAACACTAGATCTTCTATGTTTCCAGTGTTGCACTCTGTTTTGCAGACAAATATTGTTCAACGGGAGGATATTTTGAATCTAATGAGGCAAATCTCAATCGGAGATTTTCCAGCCGAGGGTGTGGCTGATGTCTCATCGGCACAGATAACAACCGAGAAATCTTTGCTTGAGGCAGCTCATGAAAGGGAAAAGGATTTACTCAACGAAGTAACTGAATTACAGTGGAGGATATTACGTGCCAGAGATGAAATCCAAAGATTAAGATCAAACAATGCAGGCTAA 2085 40.58 MEKKTYPIGEDSYVLYEEVGQGVSASVHRALCKPLNEIVAIKILDFERENCDLVSIYREVQTMILVDHPNVLKSHCSFVNGHNLWIVMPYMSGGSCLHILKAAYPDGFEEVVIATILREVLKGVEYLHNHGHIHRDIKAGNVLIDSRGAIKLGDFGVSACLFDSGDRQRVRNTFVGTPCWMAPEVMEQLNGYDFKADIWSFAITGLELAHGHAPFSKYPPMKVLMMTLQNAPPGLDYERDRKFSKSFKQMIASCLVKDPSKRPSASKLLKHSFFRQARSSDYIARTLLEGLPVLGDRIKALKRKEEDMLAQKKMPDGKKEELSQNEYKRGISGWNFNLDDLKAQASLIQEFEESISEISEVGSSSNLSSLDVQERKLQYQNSSELSDTEENGMLRRLPSMKANDSLDGRRSMNDSTIIGPCSQQLSSPRNDYQTENGSCEELPLENSKRILGSTPNSSQHKRNVSSNNTIQQETTSPLNRRESYESEKSVANGSVAIGITSQAVDDVLSDSYSKDPKSALVSPATNDEEQDEKAKVPVIQQKGRFKVTSENVDVEKAVAPPLLQKSHSMQVITSNSATPLLPSNLPTPLLTPLPSSDAIPINTRSSMFPVLHSVLQTNIVQREDILNLMRQISIGDFPAEGVADVSSAQITTEKSLLEAAHEREKDLLNEVTELQWRILRARDEIQRLRSNNAG 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 879244 886013 + CmaCh01G001930.1 Cma01g00193 285886

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00193 694 MobiDBLite consensus disorder prediction 378 490 - -
Cma01g00193 694 MobiDBLite consensus disorder prediction 409 441 - -
Cma01g00193 694 MobiDBLite consensus disorder prediction 509 534 - -
Cma01g00193 694 Coils Coil 657 691 - -
Cma01g00193 694 Gene3D Transferase(Phosphotransferase) domain 1 94 327 - -
Cma01g00193 694 SMART serkin_6 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00193 694 MobiDBLite consensus disorder prediction 449 479 - -
Cma01g00193 694 Pfam Protein kinase domain 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00193 694 SUPERFAMILY Protein kinase-like (PK-like) 11 275 IPR011009 -
Cma01g00193 694 CDD STKc_OSR1_SPAK 11 274 - -
Cma01g00193 694 ProSiteProfiles Protein kinase domain profile. 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00193 694 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 692 - -
Cma01g00193 694 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 692 - -
Cma01g00193 694 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Cma01g00193 694 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00193 K08835 OXSR1, STK39; serine/threonine-protein kinase OSR1/STK39 [EC:2.7.11.1] - csv:101211076 1140.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00193 Cma-Chr1:879244 Cma15g00341 Cma-Chr15:1575235 0 dispersed
Cma01g00193 Cma-Chr1:879244 Cma04g02707 Cma-Chr4:18283235 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma01g01216 CST 1 691 MAP Kinase Kinase Kinase Kinase AT1G53165 61.2 4.1e-217 751.9
Cma09g00851 CST 1 692 MAP Kinase Kinase Kinase Kinase AT1G53165 60.4 1.7e-215 746.5
Cma18g01102 . 268 533 MAP Kinase Kinase Kinase Kinase AT1G53165 51.7 1.2e-67 255.4
Cma01g01216 CST 1 690 MAP Kinase Kinase Kinase Kinase AT3G15220 63.9 5.1e-228 788.1
Cma09g00851 CST 1 691 MAP Kinase Kinase Kinase Kinase AT3G15220 62.7 3.1e-225 778.9
Cma18g01102 . 268 533 MAP Kinase Kinase Kinase Kinase AT3G15220 50.9 1.6e-67 255.0
Cma18g01102 . 4 843 MAP Kinase Kinase Kinase Kinase AT1G69220 58.8 4.7e-241 831.6
Cma01g01216 CST 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.2 8.2e-68 256.1
Cma09g00851 CST 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.2 9.1e-67 252.7
Cma04g02707 CST 29 692 MAP Kinase Kinase Kinase Kinase AT5G14720 65.1 1.5e-248 856.3
Cma15g00341 CST 1 699 MAP Kinase Kinase Kinase Kinase AT5G14720 63.9 4.3e-248 854.7
Cma06g00589 CST 7 720 MAP Kinase Kinase Kinase Kinase AT4G24100 64.9 1.8e-244 842.8
Cma16g01228 CST 637 1378 MAP Kinase Kinase Kinase Kinase AT4G24100 61.4 1.2e-240 830.1
Cma16g01228 CST 641 1379 MAP Kinase Kinase Kinase Kinase AT4G10730 61.9 1.6e-242 836.3
Cma06g00589 CST 11 721 MAP Kinase Kinase Kinase Kinase AT4G10730 64.2 3.1e-241 832.0
Cma01g00193 . 4 492 MAP Kinase Kinase Kinase Kinase AT1G70430 51.0 1.9e-133 473.8
Cma16g01228 CST 635 983 MAP Kinase Kinase Kinase Kinase AT1G70430 58.5 5.4e-117 419.1
Cma06g00589 CST 5 364 MAP Kinase Kinase Kinase Kinase AT1G70430 57.5 3.5e-116 416.4
Cma01g00193 . 1 677 MAP Kinase Kinase Kinase Kinase AT1G79640 59.4 1.8e-217 753.1
Cma15g00341 CST 1 327 MAP Kinase Kinase Kinase Kinase AT1G23700 59.4 1.2e-103 374.4
Cma04g02707 CST 25 352 MAP Kinase Kinase Kinase Kinase AT1G23700 59.5 1.2e-101 367.9
Cma01g00193 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.5 7.3e-88 322.0
Cma06g00589 CST 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.9 1.0e-73 275.0
Cma14g01789 . 401 877 MAP Kinase Kinase Kinase Kinase AT4G14480 57.0 4.2e-144 508.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002203 1 4 3 2 3 1 2 1 1 2 1 1 3 2 2 3 2 5 2 1 2 2 2 2 1 1 2 4 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68244 PF00069 Pkinase 6.70E-59 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g00193 Cma_Chr01 FPKM 1.182684 0.921664 0.0 0.357191 0.348351 0.55745 0.469065 0.0 0.0 0.0