Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g00193 ATGGAGAAGAAGACTTATCCGATTGGGGAAGATTCTTATGTTCTGTACGAGGAGGTTGGGCAGGGGGTGAGTGCTTCAGTTCACCGTGCTCTTTGTAAACCTCTTAATGAGATCGTCGCCATCAAGATACTCGATTTTGAGCGTGAGAATTGTGATCTGGTTAGCATTTATCGTGAAGTACAGACAATGATCTTGGTTGACCACCCAAATGTTCTTAAATCACACTGCTCCTTTGTCAATGGACATAATTTGTGGATTGTTATGCCATACATGTCTGGAGGTTCATGTCTTCACATATTGAAGGCTGCATATCCTGATGGTTTCGAGGAAGTGGTGATAGCAACAATATTACGAGAAGTGTTGAAGGGAGTTGAATATCTTCATAATCATGGACATATACATCGGGATATAAAAGCAGGGAATGTTCTTATTGATTCACGTGGTGCAATCAAGCTAGGGGATTTTGGTGTTTCTGCTTGCCTTTTTGACTCAGGTGATAGGCAACGTGTGAGGAATACATTCGTGGGGACACCATGCTGGATGGCACCTGAAGTTATGGAGCAATTAAATGGTTATGACTTCAAGGCTGACATCTGGTCTTTTGCTATAACTGGGTTAGAGCTTGCCCATGGTCATGCTCCTTTCTCAAAATATCCTCCGATGAAGGTATTGATGATGACCTTGCAAAATGCACCCCCTGGCCTTGATTATGAAAGGGACAGAAAATTTTCAAAGTCTTTTAAGCAGATGATTGCGAGTTGCTTGGTGAAAGATCCTTCAAAACGACCTTCTGCAAGTAAACTGCTGAAGCATTCATTTTTTAGGCAAGCCCGATCAAGTGATTATATTGCACGTACCCTTTTGGAAGGGCTACCTGTTCTTGGTGATCGTATAAAGGCACTTAAGAGAAAGGAAGAAGATATGCTTGCACAAAAGAAAATGCCAGATGGAAAGAAGGAAGAATTATCTCAGAATGAATATAAACGAGGAATCAGTGGATGGAATTTCAATCTTGATGATTTAAAGGCTCAGGCATCTCTGATTCAGGAATTTGAAGAATCCATAAGTGAAATCAGTGAAGTAGGGAGCTCCAGTAACTTATCTTCTCTTGATGTGCAAGAAAGGAAATTACAATATCAAAATTCTTCAGAACTTTCAGATACTGAAGAGAATGGCATGTTGCGGAGACTACCCTCTATGAAAGCTAATGATTCATTAGATGGTAGAAGATCTATGAATGATTCAACAATTATTGGTCCTTGCTCCCAACAACTTTCTTCGCCTCGCAATGATTATCAAACTGAGAATGGTTCCTGTGAAGAGCTTCCTTTGGAGAACAGCAAAAGAATACTGGGGAGTACTCCTAATTCTAGTCAACATAAAAGAAATGTTTCTTCCAATAACACCATTCAACAAGAAACCACTTCACCTCTGAACAGAAGAGAAAGTTACGAGTCAGAAAAGAGTGTTGCAAATGGCAGTGTTGCAATTGGAATAACTTCTCAAGCTGTAGATGATGTGCTTTCTGATTCTTATTCTAAAGATCCGAAGTCAGCATTAGTAAGTCCAGCAACAAATGACGAGGAACAGGATGAGAAAGCAAAGGTACCAGTTATTCAGCAGAAAGGGCGTTTCAAAGTTACTTCGGAGAATGTTGATGTAGAAAAGGCAGTTGCACCCCCTCTTCTGCAAAAAAGTCACAGTATGCAGGTGATTACCTCAAATTCTGCTACTCCTCTTCTACCTTCTAATCTACCAACTCCTCTACTGACACCTCTACCCTCATCTGATGCTATACCAATTAACACTAGATCTTCTATGTTTCCAGTGTTGCACTCTGTTTTGCAGACAAATATTGTTCAACGGGAGGATATTTTGAATCTAATGAGGCAAATCTCAATCGGAGATTTTCCAGCCGAGGGTGTGGCTGATGTCTCATCGGCACAGATAACAACCGAGAAATCTTTGCTTGAGGCAGCTCATGAAAGGGAAAAGGATTTACTCAACGAAGTAACTGAATTACAGTGGAGGATATTACGTGCCAGAGATGAAATCCAAAGATTAAGATCAAACAATGCAGGCTAA 2085 40.58 MEKKTYPIGEDSYVLYEEVGQGVSASVHRALCKPLNEIVAIKILDFERENCDLVSIYREVQTMILVDHPNVLKSHCSFVNGHNLWIVMPYMSGGSCLHILKAAYPDGFEEVVIATILREVLKGVEYLHNHGHIHRDIKAGNVLIDSRGAIKLGDFGVSACLFDSGDRQRVRNTFVGTPCWMAPEVMEQLNGYDFKADIWSFAITGLELAHGHAPFSKYPPMKVLMMTLQNAPPGLDYERDRKFSKSFKQMIASCLVKDPSKRPSASKLLKHSFFRQARSSDYIARTLLEGLPVLGDRIKALKRKEEDMLAQKKMPDGKKEELSQNEYKRGISGWNFNLDDLKAQASLIQEFEESISEISEVGSSSNLSSLDVQERKLQYQNSSELSDTEENGMLRRLPSMKANDSLDGRRSMNDSTIIGPCSQQLSSPRNDYQTENGSCEELPLENSKRILGSTPNSSQHKRNVSSNNTIQQETTSPLNRRESYESEKSVANGSVAIGITSQAVDDVLSDSYSKDPKSALVSPATNDEEQDEKAKVPVIQQKGRFKVTSENVDVEKAVAPPLLQKSHSMQVITSNSATPLLPSNLPTPLLTPLPSSDAIPINTRSSMFPVLHSVLQTNIVQREDILNLMRQISIGDFPAEGVADVSSAQITTEKSLLEAAHEREKDLLNEVTELQWRILRARDEIQRLRSNNAG 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 879244 886013 + CmaCh01G001930.1 Cma01g00193 285886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g00193 694 MobiDBLite consensus disorder prediction 378 490 - -
Cma01g00193 694 MobiDBLite consensus disorder prediction 409 441 - -
Cma01g00193 694 MobiDBLite consensus disorder prediction 509 534 - -
Cma01g00193 694 Coils Coil 657 691 - -
Cma01g00193 694 Gene3D Transferase(Phosphotransferase) domain 1 94 327 - -
Cma01g00193 694 SMART serkin_6 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00193 694 MobiDBLite consensus disorder prediction 449 479 - -
Cma01g00193 694 Pfam Protein kinase domain 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00193 694 SUPERFAMILY Protein kinase-like (PK-like) 11 275 IPR011009 -
Cma01g00193 694 CDD STKc_OSR1_SPAK 11 274 - -
Cma01g00193 694 ProSiteProfiles Protein kinase domain profile. 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g00193 694 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 692 - -
Cma01g00193 694 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 692 - -
Cma01g00193 694 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Cma01g00193 694 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00193 Cma-Chr1:879244 Cma15g00341 Cma-Chr15:1575235 0 dispersed
Cma01g00193 Cma-Chr1:879244 Cma04g02707 Cma-Chr4:18283235 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68244 PF00069 Pkinase 6.70E-59 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g00193 K08835 - csv:101211076 1140.95